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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958108
Clone id TST39A01NGRL0030_C05
Library
Length 620
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_C05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATGGATCAGAGAGAGGTAGTCTCTCAAGTTGTGATATGGAAGTTGGGATTCCCAAGTAA
GGACTTCGTGTCTGGGAAAGCAGAGTTGTTCTGCGGGAAGAGGACTCTGGAAAGAGAGTT
ACAGGGATGCCATGCCCTGAGTGTGGAAGGTGAGATCCAGAGGCGAGAACCTTGATTCTC
AAGGATTTGGAATAAGGAACGGAAGTTCCTTGGAATAGGGTTTTGCCCTAAGAATCGGAA
GCTGAGGCTTCCGGGAACCATCAAGTCTAATTCTAGAACGAACGTGGTAATACGTTCGGT
TCAAGTGCTTGTATAGACTTCTTCTCAGTAATAAAGATACTATTACGGGGGGGGACCAGC
CCATCTTCCGGTCCCCAGTACTGTGTCGATCTTCTCACTCTCTATCTCTCTCTCTATTTA
TTTCTCTCTATATCCTCTGGCTTCAGTAATAAGTGATAAATCCTATTTATCCGAATGTAT
TATATATTGTTATGCGCTCCCGTTTGTGACAGTGGTATCAGAGCATGGTGTCCTCTCTTT
CTCTATAAAGGAGGATGACTCTGGGAAGATACGGGAAGAAGCCATGACAAGCCAAGAGAG
AAGTAAGCAGGCGGAACCCT
■■Homology search results ■■ -
sp_hit_id A5IMS8
Definition sp|A5IMS8|MUTS2_THEP1 MutS2 protein OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
Align length 89
Score (bit) 33.9
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958108|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_C05, 5'
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5IMS8|MUTS2_THEP1 MutS2 protein OS=Thermotoga petrophila (st...    34   0.70 
sp|Q9X105|MUTS2_THEMA MutS2 protein OS=Thermotoga maritima GN=mu...    34   0.70 

>sp|A5IMS8|MUTS2_THEP1 MutS2 protein OS=Thermotoga petrophila
           (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mutS2 PE=3
           SV=1
          Length = 757

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -2

Query: 337 SLLLRRSLYKHLNRTYYHVRSRIRLDGSRKPQLPILRAKPYSKELP-----FLIPNP*ES 173
           SL  R    +  N T     SRIRL  +R P +P  R  P + ELP     F+I  P   
Sbjct: 266 SLYARVKFAREFNGTVVKPSSRIRLVNARHPLIPKERVVPINLELPPNKRGFIITGP--- 322

Query: 172 RFSPLDLTFHTQGMASL*LSFQSPLPAEQ 86
                 +T  T G+ +  +    PLP ++
Sbjct: 323 NMGGKTVTVKTVGLFTALMMSGFPLPCDE 351


>sp|Q9X105|MUTS2_THEMA MutS2 protein OS=Thermotoga maritima GN=mutSB
           PE=3 SV=1
          Length = 757

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -2

Query: 337 SLLLRRSLYKHLNRTYYHVRSRIRLDGSRKPQLPILRAKPYSKELP-----FLIPNP*ES 173
           SL  R    +  N T     SRIRL  +R P +P  R  P + ELP     F+I  P   
Sbjct: 266 SLYARVKFAREFNGTVVKPSSRIRLVNARHPLIPKERVVPINLELPPNKRGFIITGP--- 322

Query: 172 RFSPLDLTFHTQGMASL*LSFQSPLPAEQ 86
                 +T  T G+ +  +    PLP ++
Sbjct: 323 NMGGKTVTVKTVGLFTALMMSGFPLPCDE 351
tr_hit_id B1LC69
Definition tr|B1LC69|B1LC69_THESQ MutS2 family protein OS=Thermotoga sp. (strain RQ2)
Align length 89
Score (bit) 33.9
E-value 7.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958108|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_C05, 5'
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1LC69|B1LC69_THESQ MutS2 family protein OS=Thermotoga sp. (s...    34   7.9  
tr|B7RAL8|B7RAL8_9THEM MutS2 family protein OS=Marinitoga piezop...    34   7.9  

>tr|B1LC69|B1LC69_THESQ MutS2 family protein OS=Thermotoga sp.
           (strain RQ2) GN=TRQ2_1541 PE=3 SV=1
          Length = 757

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -2

Query: 337 SLLLRRSLYKHLNRTYYHVRSRIRLDGSRKPQLPILRAKPYSKELP-----FLIPNP*ES 173
           SL  R    +  N T     SRIRL  +R P +P  R  P + ELP     F+I  P   
Sbjct: 266 SLYARVKFAREFNGTVVKPSSRIRLVNARHPLIPKERVVPINLELPPNKRGFIITGP--- 322

Query: 172 RFSPLDLTFHTQGMASL*LSFQSPLPAEQ 86
                 +T  T G+ +  +    PLP ++
Sbjct: 323 NMGGKTVTVKTVGLFTALMMSGFPLPCDE 351


>tr|B7RAL8|B7RAL8_9THEM MutS2 family protein OS=Marinitoga
           piezophila KA3 GN=MPKA3_268 PE=4 SV=1
          Length = 757

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -2

Query: 337 SLLLRRSLYKHLNRTYYHVRSRIRLDGSRKPQLPILRAKPYSKELP-----FLIPNP*ES 173
           SL  R    +  N T     SRIRL  +R P +P  R  P + ELP     F+I  P   
Sbjct: 266 SLYARVKFAREFNGTVVKPSSRIRLVNARHPLIPKERVVPINLELPPNKRGFIITGP--- 322

Query: 172 RFSPLDLTFHTQGMASL*LSFQSPLPAEQ 86
                 +T  T G+ +  +    PLP ++
Sbjct: 323 NMGGKTVTVKTVGLFTALMMSGFPLPCDE 351