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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958123
Clone id TST39A01NGRL0030_C20
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_C20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCTCTTCCTCTTGAGTCTACGCGTGCAACGGAGTCTTACCGATGCGAACCTTAGGCGGA
GGTTGGGAATGCAATATGCAGGAATGCAGGGCTTTGAGGATGTGCATAGAAGAGATGAGG
GCTGCTTGAGGGAAAACAGAATTCATGAGTATTTAGAGGATCAACTTAAGAATCTAAGTG
TGGTAGCTTTTGGGAGAACTGAAAGTGCAGAGGATCTTCCATGTAGCTTCTCCTTCGGCG
GCATTGACGGTCACATCGATGCATTCAATTATGGTCGTCTGTCTCATGATGAAGCATAAG
CTTGTATGTGGGAAACGTCAGAGAGGTTCTATTCTACATGTCTTTGTTATATTAAGCACC
ATTCGACCACTCTGACGGTACTGAGTGGTGGTGGATCGAAGTTTATGCCCCATTTAACAA
AAGCGCGTGCTTCCATCCTTGAGATTGAGCCCCATCCAACCACTCCTATGGTGCAACCTG
GTAATGGTTCAAAGTCTATGCCCCATTTAGCAAAAGCTCGGGCTCCCATCCTTGAGAACT
CTCTCATCATTCAATCTCGACGCGGTTTGTTAGCCATGTAATGCCTGCCTGTCTGCAGTA
GATGTGGGATTTAGGGTTCCCTT
■■Homology search results ■■ -
sp_hit_id Q0KIA2
Definition sp|Q0KIA2|Y9801_DROME PP2C-like domain-containing protein CG9801 OS=Drosophila melanogaster
Align length 58
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958123|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_C20, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0KIA2|Y9801_DROME PP2C-like domain-containing protein CG9801...    32   2.0  
sp|Q63SR9|MUTS_BURPS DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|A3NB64|MUTS_BURP6 DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|Q3JQS6|MUTS_BURP1 DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|A3NWZ4|MUTS_BURP0 DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|A1V5I2|MUTS_BURMS DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|Q62J26|MUTS_BURMA DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|A2SAW7|MUTS_BURM9 DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|A3ML57|MUTS_BURM7 DNA mismatch repair protein mutS OS=Burkhol...    32   2.0  
sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus...    32   2.0  
sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gos...    32   2.6  
sp|Q97YJ9|ILVC2_SULSO Putative ketol-acid reductoisomerase 2 OS=...    31   5.9  

>sp|Q0KIA2|Y9801_DROME PP2C-like domain-containing protein CG9801
           OS=Drosophila melanogaster GN=CG9801 PE=2 SV=1
          Length = 709

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 408 PHLTKARASILEIEPHPTTPMVQPGNGSK--SMPHLAKARAPILENSLIIQSRRGLLA 575
           P      AS +    HP+TP  +P   SK  S P+ A +R   + +  +I+ R+GL++
Sbjct: 489 PKRQNKSASAIYARLHPSTPPTRPARQSKAESPPNNAPSRPKYMRSQTLIEPRQGLVS 546


>sp|Q63SR9|MUTS_BURPS DNA mismatch repair protein mutS
           OS=Burkholderia pseudomallei GN=mutS PE=3 SV=1
          Length = 890

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|A3NB64|MUTS_BURP6 DNA mismatch repair protein mutS
           OS=Burkholderia pseudomallei (strain 668) GN=mutS PE=3
           SV=1
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|Q3JQS6|MUTS_BURP1 DNA mismatch repair protein mutS
           OS=Burkholderia pseudomallei (strain 1710b) GN=mutS PE=3
           SV=2
          Length = 890

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|A3NWZ4|MUTS_BURP0 DNA mismatch repair protein mutS
           OS=Burkholderia pseudomallei (strain 1106a) GN=mutS PE=3
           SV=2
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|A1V5I2|MUTS_BURMS DNA mismatch repair protein mutS
           OS=Burkholderia mallei (strain SAVP1) GN=mutS PE=3 SV=2
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|Q62J26|MUTS_BURMA DNA mismatch repair protein mutS
           OS=Burkholderia mallei GN=mutS PE=3 SV=1
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|A2SAW7|MUTS_BURM9 DNA mismatch repair protein mutS
           OS=Burkholderia mallei (strain NCTC 10229) GN=mutS PE=3
           SV=2
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|A3ML57|MUTS_BURM7 DNA mismatch repair protein mutS
           OS=Burkholderia mallei (strain NCTC 10247) GN=mutS PE=3
           SV=2
          Length = 891

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 381 LSGGGSKFMPHLTKARASILEIEPHPTTPMVQPGNGSKSMPHLAKARA 524
           L+GG S FM  +T+A A + +  PH    M + G G+ +   LA A A
Sbjct: 683 LAGGRSTFMVEMTEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWA 730


>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus
           GN=gyaR PE=3 SV=1
          Length = 336

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 601 LLQTGRHYMANKPRRD*MMR--EFSRMGARAFAKWGIDFEPLPGCTIGVVGWGSISRMEA 428
           LL T RH +    + D  +R  E+ R G     KW + +E L G TIG+VG+G I +  A
Sbjct: 112 LLATARHVV----KGDKFVRSGEWKRKGIAWHPKWFLGYE-LYGKTIGIVGFGRIGQAIA 166

Query: 427 R 425
           R
Sbjct: 167 R 167
tr_hit_id B3DYN2
Definition tr|B3DYN2|B3DYN2_METI4 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) OS=Methylacidiphilum infernorum (isolate V4)
Align length 73
Score (bit) 37.0
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958123|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_C20, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3DYN2|B3DYN2_METI4 Phosphoribosylaminoimidazole carboxylase ...    37   0.95 
tr|A1CBW8|A1CBW8_ASPCL Alpha-galactosidase, putative OS=Aspergil...    35   2.8  
tr|Q1CWE5|Q1CWE5_MYXXD D-lactate dehydrogenase OS=Myxococcus xan...    35   4.7  

>tr|B3DYN2|B3DYN2_METI4 Phosphoribosylaminoimidazole carboxylase
           (NCAIR synthetase) OS=Methylacidiphilum infernorum
           (isolate V4) GN=purK PE=4 SV=1
          Length = 390

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 490 EPLPGCTIGVVGWGSISRMEARAFVKWGIN---FDPPPLSTVRVVEWCLI*QRHVE*NLS 320
           E LPG TIG++G G + RM A    + G +   +DP PL     +       RH   +  
Sbjct: 3   EILPGSTIGILGGGQLGRMTAMEARRLGYDVEVYDPDPLCPAAGLS-----SRHWSYSYE 57

Query: 319 DVSHIQAYASS*D 281
           D+  ++A+A S D
Sbjct: 58  DLDRLKAFARSVD 70


>tr|A1CBW8|A1CBW8_ASPCL Alpha-galactosidase, putative OS=Aspergillus
           clavatus GN=ACLA_016820 PE=4 SV=1
          Length = 525

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 538 FSRMGARAFAKWGIDFEPLPGCTIGVVGWGSISRMEARAFVKW 410
           F  + A  FA+WG+D+  L GC +   G  S++      + +W
Sbjct: 129 FEELDAHTFAEWGVDYLKLDGCNVSPAGAVSLADEYRARYARW 171


>tr|Q1CWE5|Q1CWE5_MYXXD D-lactate dehydrogenase OS=Myxococcus
           xanthus (strain DK 1622) GN=ldhA PE=3 SV=1
          Length = 338

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = -2

Query: 544 REFSRMGARAFAKWGIDFEPLPGCTIGVVGWGSISRMEARAFVKWGIN 401
           R FSR+    F+  G+    L G T+GVVG G I R+ AR F  +G N
Sbjct: 122 RAFSRVRDWNFSLDGLVGFDLAGKTVGVVGTGRIGRVAARIFKGFGCN 169