DK958170 |
Clone id |
TST39A01NGRL0030_E19 |
Library |
TST39 |
Length |
618 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_E19. 5' end sequence. |
Accession |
DK958170 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL348Contig1 |
Sequence |
CTGGATCAAAGCCCTGCAAATTCACCCAATGGGCAGCAGAATCATCTTCAAGGCGTAGCA GTAAGCAGAGAGTGCGCCTCGCAGGCGCTCGAAGCCAGGGTGCTGATGTTGCTGAATTGC AAACATCATCCTCGGGCCCTCTTCTAGTTCCTAGGCAGAGGTATTGTGAGGCAGCACACA AAACGATACGCAGGAAGACAAGAACTGTATCGGTGGGTGGTGTTACGATTGGAAGCGAGC ATCCAATTCGTGTGCAAACCATGACAACGACTGACACAACCAATGTACAGGCTTCTGTGG AACAGGTCATGCGCATAGCCGACAAAGGTGCTGATCTCGTCCGAATTACTGTCCAAGGCA AACGAGAGGCTGATGCTTGCTTTGACATAAAGAATACTCTGGTGCACAAAGGGTATCCCA TTCCTTTAGTTGCTGATATCCATTTTGCTCCTTCAGTGGCTTTGCGGGTTGCTGAATGTT TCGATAAAATCCGTATTAACCCAGGCAACTTTGCGGATCGCCGGGCCAAGTTTGAGACAC TGGAATTCACAGAGGATGATTATGAAAAGGAACTTGATCACATTGAAGAGGTCTTCACAC CTCTGGTTGAGAAATGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6MD85 |
Definition |
sp|Q6MD85|ISPG_PARUW 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) |
Align length |
155 |
Score (bit) |
185.0 |
E-value |
1.0e-46 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NZJ0 |
Definition |
tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
186 |
Score (bit) |
275.0 |
E-value |
1.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958170|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_E19, 5' (618 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome ... 275 1e-72 tr|A9ZN14|A9ZN14_HEVBR 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 273 8e-72 tr|A5BBY6|A5BBY6_VITVI Putative uncharacterized protein OS=Vitis... 272 1e-71 tr|A9CBE3|A9CBE3_GINBI (E)-4-hydroxy-3-methyl-but-2-enyl diphosp... 269 1e-70 tr|Q9FF59|Q9FF59_ARATH GcpE protein OS=Arabidopsis thaliana PE=4... 268 2e-70 tr|Q8GZR7|Q8GZR7_ARATH GcpE OS=Arabidopsis thaliana GN=At5g60600... 268 2e-70 tr|B3H725|B3H725_ARATH Uncharacterized protein At5g60600.3 OS=Ar... 268 2e-70 tr|Q8LPQ4|Q8LPQ4_ARATH AT5g60600/mup24_10 OS=Arabidopsis thalian... 267 3e-70 tr|Q0PUV7|Q0PUV7_STERE (E)-4-hydroxy-3-methylbut-2-enyl diphosph... 266 7e-70 tr|Q8RXG8|Q8RXG8_ARATH GcpE protein (At5g60600) OS=Arabidopsis t... 265 2e-69 tr|Q6K8J4|Q6K8J4_ORYSJ Os02g0603800 protein OS=Oryza sativa subs... 264 3e-69 tr|Q672R6|Q672R6_MAIZE Hydroxymethylbutenyl 4-diphosphate syntha... 264 3e-69 tr|B8AF20|B8AF20_ORYSI Putative uncharacterized protein OS=Oryza... 264 3e-69 tr|B8A0F3|B8A0F3_MAIZE Putative uncharacterized protein OS=Zea m... 264 3e-69 tr|A3A8T7|A3A8T7_ORYSJ Putative uncharacterized protein OS=Oryza... 264 3e-69 tr|Q8GZR6|Q8GZR6_SOLLC GcpE OS=Solanum lycopersicum PE=2 SV=1 262 1e-68 tr|A9RPA1|A9RPA1_PHYPA Predicted protein OS=Physcomitrella paten... 261 2e-68 tr|Q84XR5|Q84XR5_CATRO GCPE protein OS=Catharanthus roseus PE=2 ... 258 1e-67 tr|B3GEM5|B3GEM5_POPTR Putative chloroplast 4-hydroxy-3-methylbu... 254 3e-66 tr|B6UDL5|B6UDL5_MAIZE Hydroxymethylbutenyl 4-diphosphate syntha... 248 2e-64 tr|A9SJI1|A9SJI1_PHYPA 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 245 2e-63 tr|A4S2B3|A4S2B3_OSTLU 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 184 4e-45 tr|Q012C2|Q012C2_OSTTA Putative chloroplast 1-hydroxy-2-methyl-2... 182 1e-44 tr|A9SEV2|A9SEV2_PHYPA Predicted protein OS=Physcomitrella paten... 177 3e-43 tr|Q4VKB7|Q4VKB7_CHLRE Putative chloroplast 1-hydroxy-2-methyl-2... 170 7e-41 tr|A8ILN4|A8ILN4_CHLRE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphos... 170 7e-41 tr|Q84PA7|Q84PA7_ORYSJ Isoprenoid biosynthesis-like protein (Fra... 168 2e-40 tr|B7FV10|B7FV10_PHATR 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphos... 167 6e-40 tr|B6DX96|B6DX96_PHATR Putative chloroplast 4-hydroxy-3-methylbu... 167 6e-40 tr|B8C7D5|B8C7D5_THAPS Gcpe-like protein OS=Thalassiosira pseudo... 161 2e-38
>tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024531001 PE=4 SV=1 Length = 740
Score = 275 bits (704), Expect = 1e-72 Identities = 134/186 (72%), Positives = 159/186 (85%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 +++V + + +D+AELQ SS G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RRKVSVIRNSNPSSDIAELQASSEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q +V A+VEQVM+IADKGAD+VRITVQGKREADACF+IKN+LV K Y Sbjct: 101 HPIRIQTMTTTDTKDVAATVEQVMKIADKGADIVRITVQGKREADACFEIKNSLVQKNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAPSVALRVAECFDKIR+NPGNFADRRA+FE LEFT++DY+KEL+HIE+VFT Sbjct: 161 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEFTDEDYQKELEHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|A9ZN14|A9ZN14_HEVBR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Hevea brasiliensis GN=HbHDS PE=2 SV=1 Length = 740
Score = 273 bits (697), Expect = 8e-72 Identities = 133/186 (71%), Positives = 157/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++++ + + G ++ ELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RKKISMIRNSNPGPEMVELQPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIRVQ +V +VEQVMRIAD+GADLVRITVQGKREADACF+IKN+LV K Y Sbjct: 101 HPIRVQTMTTSDTKDVAGTVEQVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAPSVALRVAECFDKIR+NPGNFADRRA+FE LE+TEDDY+KEL+HIE+VFT Sbjct: 161 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|A5BBY6|A5BBY6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005654 PE=4 SV=1 Length = 740
Score = 272 bits (696), Expect = 1e-71 Identities = 133/186 (71%), Positives = 158/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 +++V + + +D+AELQ SS G PLLVPRQ+YCE+ HKT+RRKT TV VG V +GSE Sbjct: 41 RRKVSVIRNSNPSSDIAELQASSEGSPLLVPRQKYCESIHKTVRRKTCTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q +V A+VEQVM+IADKGAD+VRITVQGKREADACF+IKN+LV K Y Sbjct: 101 HPIRIQTMTTTDTKDVAATVEQVMKIADKGADIVRITVQGKREADACFEIKNSLVQKNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAPSVALRVAECFDKIR+NPGNFADRRA+FE LEFT++DY+KEL+HIE+VFT Sbjct: 161 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEFTDEDYQKELEHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|A9CBE3|A9CBE3_GINBI (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase OS=Ginkgo biloba PE=2 SV=1 Length = 741
Score = 269 bits (687), Expect = 1e-70 Identities = 130/184 (70%), Positives = 156/184 (84%), Gaps = 1/184 (0%) Frame = +3
Query: 69 RVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHP 245 R RL R+ +D+AE+Q +S G PLLVPRQ+YCE+ +KT+RR+TRT+ G V +GSEHP Sbjct: 44 RKRLNVVRNSSSDIAEMQRASEGSPLLVPRQKYCESIYKTVRRRTRTMMAGNVALGSEHP 103
Query: 246 IRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYPIP 425 IR+Q +V A+VEQVMRIAD+GADLVRITVQGK+EADAC+DIKNTLV K Y IP Sbjct: 104 IRIQTMTTTDTKDVSATVEQVMRIADRGADLVRITVQGKKEADACYDIKNTLVQKDYNIP 163
Query: 426 LVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFTPL 605 LVADIHFAPSVA+RVAECFDKIR+NPGNFADRRA+F+ LE+TE+DY+KEL+HIEEVF PL Sbjct: 164 LVADIHFAPSVAMRVAECFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFGPL 223
Query: 606 VEKC 617 VEKC Sbjct: 224 VEKC 227
>tr|Q9FF59|Q9FF59_ARATH GcpE protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 716
Score = 268 bits (684), Expect = 2e-70 Identities = 128/186 (68%), Positives = 158/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++RV + +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 16 RRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSE 75
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q ++ +V++VMRIADKGAD+VRITVQGK+EADACF+IK+ LV Y Sbjct: 76 HPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 135
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAP+VALRVAECFDKIR+NPGNFADRRA+FET+++TED+Y+KEL HIE+VFT Sbjct: 136 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFT 195
Query: 600 PLVEKC 617 PLVEKC Sbjct: 196 PLVEKC 201
>tr|Q8GZR7|Q8GZR7_ARATH GcpE OS=Arabidopsis thaliana GN=At5g60600 PE=2 SV=1 Length = 740
Score = 268 bits (684), Expect = 2e-70 Identities = 128/186 (68%), Positives = 158/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++RV + +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q ++ +V++VMRIADKGAD+VRITVQGK+EADACF+IK+ LV Y Sbjct: 101 HPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAP+VALRVAECFDKIR+NPGNFADRRA+FET+++TED+Y+KEL HIE+VFT Sbjct: 161 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|B3H725|B3H725_ARATH Uncharacterized protein At5g60600.3 OS=Arabidopsis thaliana GN=At5g60600 PE=4 SV=1 Length = 717
Score = 268 bits (684), Expect = 2e-70 Identities = 128/186 (68%), Positives = 158/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++RV + +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q ++ +V++VMRIADKGAD+VRITVQGK+EADACF+IK+ LV Y Sbjct: 101 HPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAP+VALRVAECFDKIR+NPGNFADRRA+FET+++TED+Y+KEL HIE+VFT Sbjct: 161 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|Q8LPQ4|Q8LPQ4_ARATH AT5g60600/mup24_10 OS=Arabidopsis thaliana PE=2 SV=1 Length = 741
Score = 267 bits (683), Expect = 3e-70 Identities = 128/186 (68%), Positives = 158/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++RV + +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGDVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPIR+Q ++ +V++VMRIADKGAD+VRITVQGK+EADACF+IK+ LV Y Sbjct: 101 HPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAP+VALRVAECFDKIR+NPGNFADRRA+FET+++TED+Y+KEL HIE+VFT Sbjct: 161 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
>tr|Q0PUV7|Q0PUV7_STERE (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase OS=Stevia rebaudiana GN=HDS PE=2 SV=2 Length = 740
Score = 266 bits (680), Expect = 7e-70 Identities = 129/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Frame = +3
Query: 99 GADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXXXX 275 G+D+AE + +S G PLLVP Q+YCE+ HKT+RRKTRTV VG V +GS+HPIR+Q Sbjct: 53 GSDIAEFKPASEGSPLLVPVQKYCESTHKTLRRKTRTVMVGDVALGSDHPIRIQTMTTSD 112
Query: 276 XXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYPIPLVADIHFAPS 455 +V A+VEQVM+IAD+GADLVRITVQGKREADACF+IKNTLV K Y IPLVADIHFAPS Sbjct: 113 TKDVAATVEQVMQIADRGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPS 172
Query: 456 VALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFTPLVEKC 617 VALRVAECFDKIR+NPGNFADRRA+FE LE+T+DDY+KEL+HIE+VF PLVEKC Sbjct: 173 VALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDDYQKELEHIEKVFVPLVEKC 226
>tr|Q8RXG8|Q8RXG8_ARATH GcpE protein (At5g60600) OS=Arabidopsis thaliana GN=At5g60600 PE=2 SV=1 Length = 741
Score = 265 bits (677), Expect = 2e-69 Identities = 127/186 (68%), Positives = 157/186 (84%), Gaps = 1/186 (0%) Frame = +3
Query: 63 KQRVRLAGARSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSE 239 ++RV + +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSE Sbjct: 41 RRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSE 100
Query: 240 HPIRVQXXXXXXXXNVQASVEQVMRIADKGADLVRITVQGKREADACFDIKNTLVHKGYP 419 HPI +Q ++ +V++VMRIADKGAD+VRITVQGK+EADACF+IK+ LV Y Sbjct: 101 HPIGIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 160
Query: 420 IPLVADIHFAPSVALRVAECFDKIRINPGNFADRRAKFETLEFTEDDYEKELDHIEEVFT 599 IPLVADIHFAP+VALRVAECFDKIR+NPGNFADRRA+FET+++TED+Y+KEL HIE+VFT Sbjct: 161 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFT 220
Query: 600 PLVEKC 617 PLVEKC Sbjct: 221 PLVEKC 226
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