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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958202
Clone id TST39A01NGRL0030_G04
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_G04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATCTATCCACACACTTAATGGGCTTCCCTGTCCAAGTTTGCACGGCGGGGGTGCTGCCA
AAAGTGCTGATTTTCACCGTCATAGTCTCCATATCTACACTTGGCCATTCCCTCCTCTGC
TGGTTGCTTGGCTTCTATGGATTCGGCAAGGTGGGTGATGAGCCCGGCGATAGAAGCTCA
CATTTTGATCACCTCACATATGCAGACATTTGTGATGATCAAGATCTCATAAATTCCACT
GATCATGTATATTATGCATACCATGATTCCGATGATACCTTTTTCTGTCAATCTGACATG
CCTACTCCGACGCACACTCATGCATCGACCTCTCTGCACATGCACTCACATGCTGCCCTT
CTGCATACCTCTGAAAAGCATCAGGATCGACATGGCGATGTTGTCAATGATGGCAGTCTT
CCTGCATCATGTGGCGCATACGGCGCTGCTCATGATACAGTGGCGGAGAAGGGCTTCTGC
TGTGTCTGCCTCTGCCATGTCGACCTCTTCACCGAGCATAGCCGGGTGATGGGCTGCGGT
CATCGG
■■Homology search results ■■ -
sp_hit_id P04929
Definition sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium lophurae
Align length 101
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958202|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G04, 5'
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l...    32   1.9  
sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase...    32   2.5  
sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interact...    31   3.2  
sp|Q9UID6|ZN639_HUMAN Zinc finger protein 639 OS=Homo sapiens GN...    30   7.3  
sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium m...    30   7.3  
sp|Q8CJ11|GPR64_RAT G-protein coupled receptor 64 OS=Rattus norv...    30   9.4  
sp|P77228|YDFJ_ECOLI Putative inner membrane metabolite transpor...    30   9.5  

>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium
           lophurae PE=4 SV=1
          Length = 351

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/101 (20%), Positives = 29/101 (28%)
 Frame = -3

Query: 457 YHEQRRMRHMMQEDCHH*QHRHVDPDAFQRYAEGQHVSACAERSMHECASE*ACQIDRKR 278
           +H      H    D HH  H H D      +    H         H              
Sbjct: 240 HHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHH-----HHDA 294

Query: 277 YHRNHGMHNIHDQWNL*DLDHHKCLHM*GDQNVSFYRRAHH 155
           +H +H  H+ H   +  D  HH   H     +   +  AHH
Sbjct: 295 HHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 335


>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L
            OS=Dictyostelium discoideum GN=dhkL PE=3 SV=1
          Length = 1709

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/101 (20%), Positives = 39/101 (38%)
 Frame = -3

Query: 460  LYHEQRRMRHMMQEDCHH*QHRHVDPDAFQRYAEGQHVSACAERSMHECASE*ACQIDRK 281
            L   Q   + + Q+  HH Q  H+     Q   + QH     ++   +   +   Q  ++
Sbjct: 1140 LQQRQHHQQQLQQQQHHHHQQVHLQQQQ-QHEHDAQHNQHIQQQQQQQQQQQ---QQQQQ 1195

Query: 280  RYHRNHGMHNIHDQWNL*DLDHHKCLHM*GDQNVSFYRRAH 158
              H N+G HN H   +     +H   H   + N++  +  H
Sbjct: 1196 HEHNNNGHHNSHGHNHHGSHHNHNHQHNNNNNNITINKLQH 1236


>sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interacting
           protein 1 OS=Homo sapiens GN=ATF7IP PE=1 SV=2
          Length = 1270

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 170 SPGSSPTLPNP*KPSNQQRREWPSVDMETMTVKISTFGSTPAVQ 39
           +P S P+LPNP KP+N      PS+     T   +  G+T AVQ
Sbjct: 831 NPVSLPSLPNPTKPNNVPSVPSPSI-QRNPTASAAPLGTTLAVQ 873


>sp|Q9UID6|ZN639_HUMAN Zinc finger protein 639 OS=Homo sapiens
           GN=ZNF639 PE=1 SV=1
          Length = 485

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 178 SHF-DHLTYADICDDQDLINSTDHVYYAYHDSDDTFFCQ 291
           +HF DHL + + CD Q   +S  ++++  H  D+ + CQ
Sbjct: 282 THFSDHLYWCEQCDVQFSSSSELYLHFQEHSCDEQYLCQ 320


>sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium
           methylovorum PE=1 SV=2
          Length = 322

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 91  ISTLGHSLLCWLLGFYGFGKVGDEPGDRSSHFDHLTYADICDDQDLINSTDHVYYA-YHD 267
           +  +G  L    LG YGFG +G     R+  FD     D  D     +S +  Y A +HD
Sbjct: 139 LELVGEKLDNKTLGIYGFGSIGQALAKRAQGFD--MDIDYFDTHRASSSDEASYQATFHD 196

Query: 268 SDDTFFCQS 294
           S D+    S
Sbjct: 197 SLDSLLSVS 205


>sp|Q8CJ11|GPR64_RAT G-protein coupled receptor 64 OS=Rattus
           norvegicus GN=Gpr64 PE=2 SV=1
          Length = 1013

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 299 CLLRRTLMHRPLCTCTHMLPFCIPLKSIRIDMAMLSMMAV 418
           C ++   M+  +CTC+H+  F I L   R  +    MMA+
Sbjct: 585 CSVKEKRMNETICTCSHLTSFGILLDLSRTSLPPSQMMAL 624


>sp|P77228|YDFJ_ECOLI Putative inner membrane metabolite transport
           protein ydfJ OS=Escherichia coli (strain K12) GN=ydfJ
           PE=5 SV=1
          Length = 427

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 79  VIVSISTLGHSLLCWLLGFYGFGKVGDEPGDRSSHFDHLTYADIC 213
           +I+++ T G   +  ++G + FGK+GD  G +   F  +T   IC
Sbjct: 28  LILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGIC 72
tr_hit_id B0UH23
Definition tr|B0UH23|B0UH23_METS4 Cobalamin biosynthesis protein CobW OS=Methylobacterium sp. (strain 4-46)
Align length 39
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958202|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G04, 5'
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0UH23|B0UH23_METS4 Cobalamin biosynthesis protein CobW OS=Me...    35   1.8  
tr|B8IUR3|B8IUR3_METNO Cobalamin biosynthesis protein CobW OS=Me...    35   1.8  
tr|Q9I5C8|Q9I5C8_PSEAE Probable major facilitator superfamily (M...    35   2.4  
tr|Q02HW5|Q02HW5_PSEAB Probable MFS transporter OS=Pseudomonas a...    35   2.4  
tr|B7UYE8|B7UYE8_PSEAE Probable major facilitator superfamily (M...    35   2.4  
tr|A4TVA1|A4TVA1_9PROT GTPases (G3E family) OS=Magnetospirillum ...    35   2.4  
tr|A3LM23|A3LM23_PSEAE Putative uncharacterized protein OS=Pseud...    35   2.4  
tr|A6VAG4|A6VAG4_PSEA7 Probable MFS transporter OS=Pseudomonas a...    35   3.2  
tr|B5JCW9|B5JCW9_9BACT Peptidase, M61 (Glycyl aminopeptidase) fa...    35   3.2  
tr|A4IPQ4|A4IPQ4_GEOTN Putative uncharacterized protein OS=Geoba...    33   9.0  
tr|B4BNU8|B4BNU8_9BACI Putative uncharacterized protein OS=Geoba...    33   9.0  
tr|B6NKB7|B6NKB7_BRAFL Putative uncharacterized protein OS=Branc...    33   9.0  
tr|A5AJ07|A5AJ07_VITVI Putative uncharacterized protein OS=Vitis...    33   9.2  

>tr|B0UH23|B0UH23_METS4 Cobalamin biosynthesis protein CobW
           OS=Methylobacterium sp. (strain 4-46) GN=M446_2436 PE=4
           SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = +1

Query: 394 GDVVNDGSLPASCGAYGAAHDTVAEKGFCCVCLCHVDLF 510
           GDV  DGSL ASCG  G   D V E    C+C    D F
Sbjct: 44  GDVGFDGSLLASCGVPGCDEDAVVELPNGCICCTVADDF 82


>tr|B8IUR3|B8IUR3_METNO Cobalamin biosynthesis protein CobW
           OS=Methylobacterium nodulans ORS 2060 GN=Mnod_2148 PE=4
           SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = +1

Query: 394 GDVVNDGSLPASCGAYGAAHDTVAEKGFCCVCLCHVDLF 510
           GDV  DGSL ASCG  G   D V E    C+C    D F
Sbjct: 44  GDVGFDGSLLASCGVPGCDEDAVVELPNGCICCTVADDF 82


>tr|Q9I5C8|Q9I5C8_PSEAE Probable major facilitator superfamily (MFS)
           transporter OS=Pseudomonas aeruginosa GN=PA0811 PE=4
           SV=1
          Length = 415

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  FPVQVCTAGVLPKVLIFTVIVSISTLGHSLLCWLLGFYGFGKVG 156
           FPV VC   V+  +L   ++   S LG  L+   LGF+GFG  G
Sbjct: 292 FPVMVCLGAVILGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYG 335


>tr|Q02HW5|Q02HW5_PSEAB Probable MFS transporter OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=PA14_53780 PE=4 SV=1
          Length = 415

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  FPVQVCTAGVLPKVLIFTVIVSISTLGHSLLCWLLGFYGFGKVG 156
           FPV VC   V+  +L   ++   S LG  L+   LGF+GFG  G
Sbjct: 292 FPVMVCLGAVILGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYG 335


>tr|B7UYE8|B7UYE8_PSEAE Probable major facilitator superfamily (MFS)
           transporter OS=Pseudomonas aeruginosa LESB58
           GN=PLES_45311 PE=4 SV=1
          Length = 415

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  FPVQVCTAGVLPKVLIFTVIVSISTLGHSLLCWLLGFYGFGKVG 156
           FPV VC   V+  +L   ++   S LG  L+   LGF+GFG  G
Sbjct: 292 FPVMVCLGAVILGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYG 335


>tr|A4TVA1|A4TVA1_9PROT GTPases (G3E family) OS=Magnetospirillum
           gryphiswaldense GN=MGR_0093 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +1

Query: 394 GDVVNDGSLPASCGAYGAAHDTVAEKGFCCVCLCHVDLF 510
           GDV  DG L ASCG  G A D + E    C+C    D F
Sbjct: 41  GDVGVDGDLLASCGIEGCADDDIIELANGCLCCTVADEF 79


>tr|A3LM23|A3LM23_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_05949 PE=4 SV=1
          Length = 415

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  FPVQVCTAGVLPKVLIFTVIVSISTLGHSLLCWLLGFYGFGKVG 156
           FPV VC   V+  +L   ++   S LG  L+   LGF+GFG  G
Sbjct: 292 FPVMVCLGAVILGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYG 335


>tr|A6VAG4|A6VAG4_PSEA7 Probable MFS transporter OS=Pseudomonas
           aeruginosa (strain PA7) GN=PSPA7_4707 PE=4 SV=1
          Length = 415

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  FPVQVCTAGVLPKVLIFTVIVSISTLGHSLLCWLLGFYGFGKVG 156
           FPV VC   V+  +L   ++   S LG  L+   LGF+GFG  G
Sbjct: 292 FPVMVCLGAVVLGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYG 335


>tr|B5JCW9|B5JCW9_9BACT Peptidase, M61 (Glycyl aminopeptidase)
           family protein OS=Verrucomicrobiae bacterium DG1235
           GN=VDG1235_3375 PE=4 SV=1
          Length = 628

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 142 FGKVGDEPG--DRSSHFDHLTYADICDDQDLINSTDHVYYAYHDSDDTFFCQSD 297
           FGK+  E G     +HF+   +  +C DQ   N  +H+  +Y+   + FF + D
Sbjct: 241 FGKLASEAGLLFGGAHFEQYDFLLVCSDQLPFNGLEHLKSSYNSVSERFFLEED 294


>tr|A4IPQ4|A4IPQ4_GEOTN Putative uncharacterized protein
           OS=Geobacillus thermodenitrificans (strain NG80-2)
           GN=GTNG_1953 PE=4 SV=1
          Length = 243

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 19/110 (17%), Positives = 51/110 (46%)
 Frame = +2

Query: 140 DSARWVMSPAIEAHILITSHMQTFVMIKIS*IPLIMYIMHTMIPMIPFSVNLTCLLRRTL 319
           + A W+ +  I A+  +TS +    ++ ++ +  ++  + +++P +P S+ L C    T+
Sbjct: 135 EHAVWLYA-MIAAYFFVTSFIGFHPLVSLTLLMPLLKPIISLVPTVPLSIVLICCSLSTV 193

Query: 320 MHRPLCTCTHMLPFCIPLKSIRIDMAMLSMMAVFLHHVAHTALLMIQWRR 469
           MH P      +L   + +   R+    +S+   ++  +    +  + + R
Sbjct: 194 MHSPYNISVSLLADELGVNPYRVGRWNISLAIAYMAEIGVAVVARMLFHR 243