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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958209
Clone id TST39A01NGRL0030_G11
Library
Length 638
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_G11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACACTTGGTGGTGGGAAGTGGACGCACCAGTCGAGCAGGCTTGGGCTGCCAGCGGGAAG
GACTTCATGAAAGCGGATGAGTGGATGACCTCTATCATCATCACGGGGACGTCCGTGCTG
GTGGGGGGGAAAATGAACGAGCCGGGGACCTGCCTGCGCAGAGTAGACTGTTATCGCAAC
GCGGTGCTGCCCGAGGAGGACGAGAATTCAGTTGCTGAAGAGACACTGTTCTTCGGCCTG
CAGAAGCTCTTGTCGCTCAACGATAGCACCCACTCATTCAGCTACAAGGCGGCGGGTGGA
AATTTGCCGGGCTTCGACGTCGATGGGCTGATTGATTACCACAGCTACTTCCAGCTGAAG
GAACACCCCCAGCACAAGGAAAAATCTGTGATCCAGTGGCGCTACACCTCCAAGCCCTCG
CCCTACCTGTCAAAGACCGAGGCGGACGAGGTCTGTTTCAGTCTTTACGACACGGCCGTC
GGGGATCTCCGCGCCCGCCTCGCTAGCCCACTCAAGACTGGTATTGCCCACCGCCGCTCT
CCGCCCACCGAGCCCGTCGCCTTCCTCAAGGCAGCCTTTTCTGAGGTCTGAGGGCCATCT
CACAACCAGATGGGCTAATTTGGGCATTTTGGGAATTT
■■Homology search results ■■ -
sp_hit_id A1S3Z1
Definition sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Align length 32
Score (bit) 33.5
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958209|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G11, 5'
         (638 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanel...    33   0.95 
sp|P40349|URB1_USTMA Siderophore biosynthesis regulatory protein...    33   1.6  
sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanel...    32   2.8  
sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanel...    32   2.8  
sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanel...    32   2.8  
sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanel...    32   2.8  
sp|Q747A2|SYC_GEOSL Cysteinyl-tRNA synthetase OS=Geobacter sulfu...    32   3.6  
sp|Q9VQD2|CP391_DROME Probable cytochrome P450 309a1 OS=Drosophi...    32   3.6  
sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small ...    31   6.2  
sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophi...    31   6.2  
sp|Q96LP4|YS017_HUMAN Putative uncharacterized protein FLJ25328 ...    30   8.1  
sp|Q8K071|TM221_MOUSE Transmembrane protein 221 OS=Mus musculus ...    30   8.1  
sp|Q7M962|NAPA_WOLSU Periplasmic nitrate reductase OS=Wolinella ...    30   8.1  

>sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B) GN=rimM PE=3
           SV=1
          Length = 176

 Score = 33.5 bits (75), Expect = 0.95
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 414
           V+G+ DY  +F LKEH + +E  V QWR+  K
Sbjct: 32  VEGIFDYSPWF-LKEHGEWREVKVSQWRFHGK 62


>sp|P40349|URB1_USTMA Siderophore biosynthesis regulatory protein
            URBS1 OS=Ustilago maydis GN=URBS1 PE=4 SV=2
          Length = 1084

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +3

Query: 93   YHHHGDVRAGGGENERAGDLPAQSRLLSQRGAARGGREFSC*R-DTVLRPAEALVAQR*H 269
            +HHH  V      +  AG  P+    LS+    R    F   R D VLR AEA++A    
Sbjct: 776  HHHHHPVTVSASSHGHAGQAPSGMTKLSEVERLRDELLFERRRIDEVLRRAEAILASARA 835

Query: 270  PLIQLQGGGWKFAGLR--RRWAD*LPQLLPAEGTPPAQGK 383
                ++  G   +GLR     +   P    A+G+P A  +
Sbjct: 836  GNFHVEAAGPSTSGLRNGHEASHESPPTGSAQGSPGADAR 875


>sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanella
           sp. (strain MR-7) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 414
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanella
           sp. (strain MR-4) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 414
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanella
           sp. (strain ANA-3) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 414
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanella
           oneidensis GN=rimM PE=3 SV=1
          Length = 177

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 319 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 414
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 33  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 63


>sp|Q747A2|SYC_GEOSL Cysteinyl-tRNA synthetase OS=Geobacter
           sulfurreducens GN=cysS PE=3 SV=1
          Length = 481

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
 Frame = +3

Query: 9   VVGSGRTSRAGLGCQREGLHESG*VDDLYHHHGDVRAGGGENERAGDLPAQS----RLLS 176
           V+  G   RA L   RE +   G V  L+           ++ +A  LP ++    RL+ 
Sbjct: 382 VLAEGEIDRAVLASAREAIDRVGAVLGLFTSEPGAFVERLKSRKAAALPIEAAEIERLIE 441

Query: 177 QRGAARGGREFSC*RDTVLRPAEALVAQR*HPLIQLQGGGWK 302
           +R AAR  R+F   R   +R  + L AQ    L   QG  WK
Sbjct: 442 ERNAARKARDFR--RADEIR--DTLAAQGILLLDSAQGTTWK 479


>sp|Q9VQD2|CP391_DROME Probable cytochrome P450 309a1 OS=Drosophila
           melanogaster GN=Cyp309a1 PE=1 SV=3
          Length = 529

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 238 LQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEK 384
           L +L    +S H     A   +L GF+  G + YH  + L EH + +EK
Sbjct: 309 LIQLQQRGNSIHDSVGHALTVHLDGFETSGAVLYHMLYSLSEHHEEQEK 357


>sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small
           chain OS=African swine fever virus (isolate
           Pig/Kenya/KEN-50/1950) GN=Ken-056 PE=3 SV=1
          Length = 327

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 205 NSVAEETLFFG-LQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYF 351
           N++ EE +    L++ + L D   S+++  A G++PGF  + L  Y  YF
Sbjct: 214 NNIPEEKIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYF 263


>sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophila
           melanogaster GN=Cyp313a1 PE=2 SV=2
          Length = 492

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 GFDVDGLIDYHSYFQLKEHPQHKE 381
           G+D   L  YH+ F L  HP+H+E
Sbjct: 298 GYDTSALTVYHALFLLANHPEHQE 321
tr_hit_id A9RBN8
Definition tr|A9RBN8|A9RBN8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 134
Score (bit) 38.5
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958209|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G11, 5'
         (638 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RBN8|A9RBN8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.35 
tr|Q28S42|Q28S42_JANSC Putative uncharacterized protein OS=Janna...    37   1.3  
tr|A7PEI3|A7PEI3_VITVI Chromosome chr11 scaffold_13, whole genom...    37   1.3  
tr|A9PJ81|A9PJ81_POPJC Putative uncharacterized protein OS=Popul...    36   1.7  
tr|A9S6R2|A9S6R2_PHYPA Predicted protein OS=Physcomitrella paten...    36   2.3  
tr|Q3BUH1|Q3BUH1_XANC5 Filamentous hemagglutinin-related protein...    35   2.9  
tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    35   2.9  
tr|A5BHR2|A5BHR2_VITVI Putative uncharacterized protein (Chromos...    34   6.5  
tr|Q4RBY8|Q4RBY8_TETNG Chromosome undetermined SCAF20279, whole ...    34   8.6  
tr|B4F2E2|B4F2E2_PROMH Putative uncharacterized protein OS=Prote...    34   8.6  

>tr|A9RBN8|A9RBN8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63969 PE=4 SV=1
          Length = 166

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 34/134 (25%), Positives = 61/134 (45%)
 Frame = +1

Query: 19  VDAPVEQAWAASGKDFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDCYRNAVLPEE 198
           + AP+++ W  +  DF++    +T   + G + + G        C R+V       LP  
Sbjct: 21  ISAPIDKVWDVAS-DFLRFPNLLTIEPVEGENRVPG--------CTRKV-----TNLPGR 66

Query: 199 DENSVAEETLFFGLQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHK 378
            +   A+    +  QKL+++N S H FSY+    N  G D      Y+S FQ  +  +  
Sbjct: 67  TDTESAQ----WAKQKLVAINPSEHVFSYEFLENN-TGVDP----GYYSTFQAMQ--EED 115

Query: 379 EKSVIQWRYTSKPS 420
            K++++W +   PS
Sbjct: 116 GKTLVRWAFRFSPS 129


>tr|Q28S42|Q28S42_JANSC Putative uncharacterized protein
           OS=Jannaschia sp. (strain CCS1) GN=Jann_1553 PE=4 SV=1
          Length = 173

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 21/99 (21%), Positives = 40/99 (40%)
 Frame = +1

Query: 19  VDAPVEQAWAASGKDFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDCYRNAVLPEE 198
           +DAP+++ W   G ++  A +W +S+ ++G         + P                  
Sbjct: 9   IDAPLDKVWDIVGPNYTSAGDWASSVYVSGARAGTPKVASAPAA---------------- 52

Query: 199 DENSVAEETLFFGLQKLLSLNDSTHSFSYKAAGGNLPGF 315
               V E +L    + + + +   H+ SY A G  +PGF
Sbjct: 53  --GRVCETSLGPFTETIEAYDADRHTVSYSAGGEKMPGF 89


>tr|A7PEI3|A7PEI3_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016676001
           PE=4 SV=1
          Length = 209

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 39/164 (23%), Positives = 69/164 (42%)
 Frame = +1

Query: 34  EQAWAASGKDFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDCYRNAVLPEEDENSV 213
           EQ W    +DF   ++W  ++    T + V G   +PG       C R     +   NS 
Sbjct: 30  EQVWPLL-EDFFGLNKWFPTLT---TCLPVEGVSGQPG-------CTRYCAGFKTHANS- 77

Query: 214 AEETLFFGLQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEKSVI 393
            +  + +  QKLLS++    +FSY           +DG + ++SY    +    +E   I
Sbjct: 78  GDVIMNWTKQKLLSIDPDELTFSYSI---------IDGNVGFNSYVSTVKVLPTEEGCSI 128

Query: 394 QWRYTSKPSPYLSKTEADEVCFSLYDTAVGDLRARLASPLKTGI 525
           +WRY  +P    +  + D    S   + +  +  R+ + LK G+
Sbjct: 129 EWRYEVEPVEGWTLGDLD----SFIGSGLQVMAKRMEAALKAGM 168


>tr|A9PJ81|A9PJ81_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 171

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
 Frame = +1

Query: 13  WEVDAPVE-------QAWAASGKDFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDC 171
           WE  A VE       Q W    +DF    +W+  +    T   V G++ +PG     V C
Sbjct: 9   WEGKATVELRGPTADQVWPCL-EDFCNLQKWLPRV---DTCYRVEGELGQPGL----VRC 60

Query: 172 YRNAVLPEEDENSVAEETLFFGLQKLLSLNDSTHSFSYKAAGGN 303
              + +P E  +   E  + +  +KL+ +N S    SY+    N
Sbjct: 61  CNFSKVPSEGSHEDEENKVIWAKEKLIMINPSERCLSYEILENN 104


>tr|A9S6R2|A9S6R2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163145 PE=4 SV=1
          Length = 279

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 241 QKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSKPS 420
           QKL+ +N S H FSY++   N  G D    + Y+S FQ K+  +   K++++W +   PS
Sbjct: 72  QKLVVINPSEHVFSYESLENN-TGVD----LGYYSAFQAKQ--EEDGKTLVRWAFRFSPS 124


>tr|Q3BUH1|Q3BUH1_XANC5 Filamentous hemagglutinin-related protein
            OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
            GN=fhaB2 PE=4 SV=1
          Length = 3709

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = +3

Query: 6    LVVGSGRTSRAGLGCQREGLHESG*VDDLYHHHGDVRAGGGENERAGDLPAQSRLLSQRG 185
            L VGS R +    G QR G+  +G VD+     GD+  G G    AG L +  +L S+RG
Sbjct: 1276 LGVGSLRQTGQAYGLQRLGVTANGAVDN----RGDLIGGDGLRVEAGQLSSSGQLGSERG 1331

Query: 186  ----AARGGREFSC*RDTVLRPAEALVAQR*HPLIQ 281
                 +RG  +     D  L  A AL AQ    L+Q
Sbjct: 1332 DVALISRGNLQL----DGRLASAGALTAQADGALMQ 1363


>tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_94026 PE=4 SV=1
          Length = 110

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 355 LKEHPQHKEKSVIQWRYTSKPSPYLSKTEADEVCF 459
           L E+ QHK+   ++WRY  +P    ++TEA   C+
Sbjct: 10  LSEYEQHKDYETLKWRYVKRPGAQAARTEAWYGCY 44


>tr|A5BHR2|A5BHR2_VITVI Putative uncharacterized protein (Chromosome
           chr4 scaffold_6, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00032406001 PE=4 SV=1
          Length = 163

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 33/128 (25%), Positives = 53/128 (41%)
 Frame = +1

Query: 34  EQAWAASGKDFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDCYRNAVLPEEDENSV 213
           +Q W    +DF    +WM S+    T   V G   +PG       C   A  P+  + + 
Sbjct: 23  DQVWPFL-EDFCSLHKWMPSL---DTCYQVEGVKGQPGLIRY---CSSTAASPDNPDQT- 74

Query: 214 AEETLFFGLQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEKSVI 393
              T+ +  +KLL+++   H FSY+    N+      G   Y + F  K  P +    +I
Sbjct: 75  ---TVNWVKEKLLTIDPINHCFSYEVLDNNM------GFNSYVTTF--KVIPINGGGCLI 123

Query: 394 QWRYTSKP 417
           QW +   P
Sbjct: 124 QWSFVCDP 131


>tr|Q4RBY8|Q4RBY8_TETNG Chromosome undetermined SCAF20279, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00038232001 PE=4 SV=1
          Length = 175

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 475 PCRKD*NRPRPPRSLTGRARAW--RCSATGSQIFPCAGGVPSAGSSCGNQSAHRRRSPAN 302
           PC     RP PP   T  A  W   CSA G++  P   G P+  S CG     RR     
Sbjct: 109 PCAAAGPRPAPPPGTTTAAATWSTTCSAKGARRGPTRPG-PAPRSRCG-----RRGGSGT 162

Query: 301 FHPPP 287
           F P P
Sbjct: 163 FPPAP 167


>tr|B4F2E2|B4F2E2_PROMH Putative uncharacterized protein OS=Proteus
           mirabilis (strain HI4320) GN=PMI2294 PE=4 SV=1
          Length = 107

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +1

Query: 13  WEVDAPVEQAWAASGK---DFMKADEWMTSIIITGTSVLVGGKMNEPGTCLRRVDCYRNA 183
           W++DAP ++A+A+S     D M+A EW+  ++I   S L+   M  P T       Y  A
Sbjct: 24  WQLDAPNDEAFASSEPFCIDTMEAHEWLQWVLIPRLSSLIDSGMALP-TAFAIAPYYEEA 82

Query: 184 VLPEEDENSV 213
              +E  + V
Sbjct: 83  FKDDETRDYV 92