DK958223 |
Clone id |
TST39A01NGRL0030_H01 |
Library |
TST39 |
Length |
615 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_H01. 5' end sequence. |
Accession |
DK958223 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL151Contig1 |
Sequence |
GGTTTACGAGCCTGTGCGTTTGTTCTTATTGCTGCTGCTGCTAACGAGCACTCCATCCAG CAGAGAAGATGGCGGAAGCAGTGCCCCTCCCTTCCGGTCGCCTGAAGTGAAGCTCTTTGG CCGCTGGACCTTCGATGACGTCGAGATCAATGACATCTCGCTGGCTGACTATATCGCTGT CTCGGTGCACAAACATGCCACCTTTGTGCCTCATACCGCTGGGAGATATTCGGTGAAACG TTTCAGAAAGGCCCAGTGCCCCATTGTGGAGAGATTGACCAACTCTCTCATGATGCATGG CCGAAACAATGGAAAGAAGCTAATGGCAGTGCGGATTGTTAAGCACGCCATGGAGATTAT TCACTTGTTGACTGATCAAAATCCAATTCAAGTTATTGTTGATGCAGTTATCAACAGTGG TCCTCGGGAGGATGCCACTCGTATTGGATCGGCTGGTGTTGTTAGAAGACAGGCTGTCGA TATCTCTCCTCTTAGGAGAGTAAACCAGGCTATCTATCTCCTCACTACTGGTGCTCGAGA GAGTGCTTTCAGAAATATCAAGACTATAGCGGAGTGCCTTGCTGATGAGCTGATCAATGC AGCCAAAGGTTCTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65731 |
Definition |
sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum |
Align length |
170 |
Score (bit) |
311.0 |
E-value |
2.0e-84 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RHY5 |
Definition |
tr|A9RHY5|A9RHY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
171 |
Score (bit) |
332.0 |
E-value |
1.0e-89 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958223|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_H01, 5' (615 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RHY5|A9RHY5_PHYPA Predicted protein OS=Physcomitrella paten... 332 1e-89 tr|A9NRE6|A9NRE6_PICSI Putative uncharacterized protein OS=Picea... 324 3e-87 tr|B3TLN7|B3TLN7_ELAGV 40S ribosomal protein S5 OS=Elaeis guinee... 313 4e-84 tr|A7PYZ4|A7PYZ4_VITVI Chromosome chr4 scaffold_39, whole genome... 313 5e-84 tr|A7PW34|A7PW34_VITVI Chromosome chr8 scaffold_34, whole genome... 312 9e-84 tr|Q2R4A1|Q2R4A1_ORYSJ 40S ribosomal protein S5, putative, expre... 311 2e-83 tr|A2ZE95|A2ZE95_ORYSI Putative uncharacterized protein OS=Oryza... 311 2e-83 tr|Q93VC6|Q93VC6_ORYSJ cDNA clone:006-206-E02, full insert seque... 306 5e-82 tr|A2WJL4|A2WJL4_ORYSI Putative uncharacterized protein OS=Oryza... 306 5e-82 tr|A9PC08|A9PC08_POPTR Putative uncharacterized protein OS=Popul... 306 6e-82 tr|B6SHZ1|B6SHZ1_MAIZE 40S ribosomal protein S5 OS=Zea mays PE=2... 304 3e-81 tr|B3TLU9|B3TLU9_ELAGV 40S ribosomal protein S5 OS=Elaeis guinee... 304 3e-81 tr|B6SI83|B6SI83_MAIZE 40S ribosomal protein S5 OS=Zea mays PE=2... 303 4e-81 tr|B4FB66|B4FB66_MAIZE Putative uncharacterized protein OS=Zea m... 303 4e-81 tr|B7FMH6|B7FMH6_MEDTR Putative uncharacterized protein (Fragmen... 303 7e-81 tr|B6UGL6|B6UGL6_MAIZE 40S ribosomal protein S5 OS=Zea mays PE=2... 302 1e-80 tr|B7FGS4|B7FGS4_MEDTR Putative uncharacterized protein OS=Medic... 301 2e-80 tr|Q6RH11|Q6RH11_CAPAN 40S ribosomal protein S5 OS=Capsicum annu... 300 3e-80 tr|A4RZJ5|A4RZJ5_OSTLU Ribosomal protein S5, component of cytoso... 300 6e-80 tr|A8J2I5|A8J2I5_CHLRE Ribosomal protein S5 OS=Chlamydomonas rei... 297 3e-79 tr|B6E206|B6E206_CHLPR Ribosomal protein S5 OS=Chlorella prototh... 285 1e-75 tr|Q0P475|Q0P475_DANRE Zgc:153322 OS=Danio rerio GN=zgc:153322 P... 284 3e-75 tr|Q7SYU3|Q7SYU3_XENLA MGC64490 protein OS=Xenopus laevis GN=rps... 284 3e-75 tr|Q91V55|Q91V55_MOUSE Putative uncharacterized protein OS=Mus m... 283 4e-75 tr|B0BN81|B0BN81_RAT Rps5 protein (Ribosomal protein S5, isoform... 283 4e-75 tr|Q2UVI0|Q2UVI0_9CHLO 40S ribosomal protein S5 OS=Chlamydomonas... 283 4e-75 tr|Q0PXZ7|Q0PXZ7_DIACI Putative S5e ribosomal protein OS=Diaphor... 283 4e-75 tr|Q53G25|Q53G25_HUMAN Ribosomal protein S5 variant (Fragment) O... 283 4e-75 tr|B2R4T2|B2R4T2_HUMAN cDNA, FLJ92205, Homo sapiens ribosomal pr... 283 4e-75 tr|Q90YR9|Q90YR9_ICTPU 40S ribosomal protein S5 OS=Ictalurus pun... 283 6e-75
>tr|A9RHY5|A9RHY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106946 PE=3 SV=1 Length = 196
Score = 332 bits (850), Expect = 1e-89 Identities = 166/171 (97%), Positives = 170/171 (99%) Frame = +2
Query: 101 PEVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLT 280 PEVKLFGRW+FDD+EINDISLADYIAVSV KHATFVPHTAGRYSVKRFRKAQCPIVERLT Sbjct: 6 PEVKLFGRWSFDDIEINDISLADYIAVSVDKHATFVPHTAGRYSVKRFRKAQCPIVERLT 65
Query: 281 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV 460 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA+INSGPREDATRIGSAGV Sbjct: 66 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGV 125
Query: 461 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 +RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 126 IRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 176
>tr|A9NRE6|A9NRE6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 198
Score = 324 bits (830), Expect = 3e-87 Identities = 162/171 (94%), Positives = 167/171 (97%) Frame = +2
Query: 101 PEVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLT 280 PEVKLF RWTF+DVE+ND+SLADYIAV KHATFVPHTAGRYSVKRFRKAQCPIVERLT Sbjct: 8 PEVKLFNRWTFEDVEVNDLSLADYIAVQSQKHATFVPHTAGRYSVKRFRKAQCPIVERLT 67
Query: 281 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV 460 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA+INSGPREDATRIGSAGV Sbjct: 68 NSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGV 127
Query: 461 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 VRRQAVDISPLRRVNQAI+LLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 128 VRRQAVDISPLRRVNQAIFLLTTGARESAFRNIKTIAECLADELINAAKGS 178
>tr|B3TLN7|B3TLN7_ELAGV 40S ribosomal protein S5 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 195
Score = 313 bits (803), Expect = 4e-84 Identities = 157/170 (92%), Positives = 166/170 (97%) Frame = +2
Query: 104 EVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 283 EVKLF RW+F++VE++DISLADYIAVS KHAT++PHTAGRY+VKRFRKAQCPIVERLTN Sbjct: 6 EVKLFNRWSFEEVEVSDISLADYIAVSPAKHATYLPHTAGRYAVKRFRKAQCPIVERLTN 65
Query: 284 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 463 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAGVV Sbjct: 66 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGVV 125
Query: 464 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 126 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 175
>tr|A7PYZ4|A7PYZ4_VITVI Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026702001 PE=3 SV=1 Length = 204
Score = 313 bits (802), Expect = 5e-84 Identities = 157/170 (92%), Positives = 165/170 (97%) Frame = +2
Query: 104 EVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 283 EVKLF RW+FD+V+I D+SL DY+AV+ KHAT+VPHTAGRYSVKRFRKAQCPIVERLTN Sbjct: 15 EVKLFNRWSFDEVQIGDMSLLDYVAVNPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 74
Query: 284 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 463 SLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV Sbjct: 75 SLMMHGRNNGKKLMAVRIMKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 134
Query: 464 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 135 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 184
>tr|A7PW34|A7PW34_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025458001 PE=3 SV=1 Length = 208
Score = 312 bits (800), Expect = 9e-84 Identities = 157/182 (86%), Positives = 167/182 (91%) Frame = +2
Query: 68 DGGSSAPPFRSPEVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFR 247 D + VKLF RW+FD+V+I+DISL DYIAV+ KHAT+VPHTAGRYSVKRFR Sbjct: 7 DAAGGITNLQETTVKLFNRWSFDEVQISDISLEDYIAVNPAKHATYVPHTAGRYSVKRFR 66
Query: 248 KAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPR 427 KAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLT+QNPIQVIVDAVINSGPR Sbjct: 67 KAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTEQNPIQVIVDAVINSGPR 126
Query: 428 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAK 607 EDATRIGSAGVVRRQAVDISPLRR+NQAIYLLTTGARESAFRNIKTIAECLADELINAAK Sbjct: 127 EDATRIGSAGVVRRQAVDISPLRRINQAIYLLTTGARESAFRNIKTIAECLADELINAAK 186
Query: 608 GS 613 GS Sbjct: 187 GS 188
>tr|Q2R4A1|Q2R4A1_ORYSJ 40S ribosomal protein S5, putative, expressed OS=Oryza sativa subsp. japonica GN=Os11g0482000 PE=2 SV=1 Length = 199
Score = 311 bits (797), Expect = 2e-83 Identities = 154/170 (90%), Positives = 164/170 (96%) Frame = +2
Query: 104 EVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 283 EVKLF RW+F+DV++NDISLADY+AV+ KHAT++PHTAGRYS KRFRKAQCPIVERLTN Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 284 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 463 SLMMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG V Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 464 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 179
>tr|A2ZE95|A2ZE95_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36106 PE=3 SV=1 Length = 199
Score = 311 bits (797), Expect = 2e-83 Identities = 154/170 (90%), Positives = 164/170 (96%) Frame = +2
Query: 104 EVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 283 EVKLF RW+F+DV++NDISLADY+AV+ KHAT++PHTAGRYS KRFRKAQCPIVERLTN Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 284 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 463 SLMMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG V Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 464 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 179
>tr|Q93VC6|Q93VC6_ORYSJ cDNA clone:006-206-E02, full insert sequence OS=Oryza sativa subsp. japonica GN=P0672D08.6 PE=2 SV=1 Length = 200
Score = 306 bits (785), Expect = 5e-82 Identities = 152/169 (89%), Positives = 162/169 (95%) Frame = +2
Query: 107 VKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTNS 286 VKLF W+F+DV++NDISLADY+AVS KHAT++PHTAGRYS KRFRKAQCP+VERLTNS Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 287 LMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVR 466 LMMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG VR Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 467 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 180
>tr|A2WJL4|A2WJL4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00008 PE=3 SV=1 Length = 200
Score = 306 bits (785), Expect = 5e-82 Identities = 152/169 (89%), Positives = 162/169 (95%) Frame = +2
Query: 107 VKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTNS 286 VKLF W+F+DV++NDISLADY+AVS KHAT++PHTAGRYS KRFRKAQCP+VERLTNS Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 287 LMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVR 466 LMMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG VR Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 467 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 180
>tr|A9PC08|A9PC08_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 207
Score = 306 bits (784), Expect = 6e-82 Identities = 153/170 (90%), Positives = 162/170 (95%) Frame = +2
Query: 104 EVKLFGRWTFDDVEINDISLADYIAVSVHKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 283 +VKLF RW+FDD+ +NDISLADY+ V V KHAT+VPHTAGRYSVKRFRKAQCPIVERLTN Sbjct: 19 DVKLFNRWSFDDINVNDISLADYVGVQV-KHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 284 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 463 SL MHGRNNGKKL AV IVKHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVV Sbjct: 78 SLQMHGRNNGKKLKAVTIVKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 137
Query: 464 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 613 RRQAVDISPLRRVNQA+YLLTTGARE+AFRNIKTIAECLADELINAAKGS Sbjct: 138 RRQAVDISPLRRVNQALYLLTTGAREAAFRNIKTIAECLADELINAAKGS 187
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