NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958283
Clone id TST39A01NGRL0030_J14
Library
Length 632
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_J14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCGCGTTGTCTCGAACCATCTCTTTACCTACGCAGCTTCGTCTAGGACTGTCTCTGACC
TTGCATCATCGCCCCGTTATCTCCTGCCTCTCTCACACGATTAACTTCTCTCTTTCTAGC
CGAAGGAGGGTCCCTCTTACGACACATATAACAGGTAATTGGTCGAAGAGTTGTGCTCCT
CCTGTATTTTTGGTATCCAAAGCTACTGGTAATAGTGCCATCGATAGCAGTGTCTCAACA
GGAGATTTAACTGGCTTGTATAAGAAAGTGCTTTTACCCATCATCGATCGCAATCCGTAT
TTATCAGAGGCAACCAGGCAGGCTGCCGCAACCACCACTGCCTTGGCCAAAAAGTATGGA
GCTGAGATCACAGTAGTTGTAATTGATGAGAACACCAAGGAGTCAATAGATGACCATGAC
TTAAGAATCAAGAACATACGTTGGCATCTTGCTCAAGGTGGCTTTGAAGAGTTTGGCCTG
TTGGAAAGCCTTGGTGAAGGAAAGCTGCCGGCAGCCATCATTGGAGAGATTGCTGATGAT
TTGAGCCTTGATTTGGTTGTTTTGAGCATGGAAAGCATTCATTCAAAGCACATTGATGGA
AATCTTCTTCCTGAGTTTGTTCCCTGTCCAAT
■■Homology search results ■■ -
sp_hit_id Q3SRY9
Definition sp|Q3SRY9|RS6_NITWN 30S ribosomal protein S6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Align length 60
Score (bit) 31.2
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958283|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_J14, 5'
         (632 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SRY9|RS6_NITWN 30S ribosomal protein S6 OS=Nitrobacter wino...    31   4.6  
sp|O57774|DTDA_PYRHO D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus...    31   6.1  

>sp|Q3SRY9|RS6_NITWN 30S ribosomal protein S6 OS=Nitrobacter
           winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsF PE=3
           SV=1
          Length = 139

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 225 IDG--TITSSFGYQKYRRSTTLRPITCYMCRKRDPPSARKREVNRVREAGDNGAMMQGQR 52
           IDG  TI +    Q+      +R +T  +    D PSA  R+ +R RE  D G   +G R
Sbjct: 65  IDGPATIVNEIERQERIHEDVIRYLTVRVDEHEDGPSAMMRKADRDRERDDRGGGFRGDR 124


>sp|O57774|DTDA_PYRHO D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus
           horikoshii GN=dtdA PE=1 SV=1
          Length = 274

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 12/20 (60%), Positives = 18/20 (90%), Gaps = 1/20 (5%)
 Frame = +1

Query: 115 SSRRRVP-LTTHITGNWSKS 171
           SS++++P LTTH+TGNW K+
Sbjct: 81  SSKQKLPALTTHVTGNWGKA 100
tr_hit_id A9TFM3
Definition tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 146
Score (bit) 119.0
E-value 2.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958283|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_J14, 5'
         (632 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment) OS=Physcomit...   119   2e-25
tr|Q9FKX3|Q9FKX3_ARATH Genomic DNA, chromosome 5, TAC clone:K2A1...   118   3e-25
tr|Q7XJ15|Q7XJ15_ORYSJ Os09g0541700 protein OS=Oryza sativa subs...   117   6e-25
tr|A2Z3L9|A2Z3L9_ORYSI Putative uncharacterized protein OS=Oryza...   117   6e-25
tr|Q8GWN7|Q8GWN7_ARATH Putative uncharacterized protein At5g6609...   115   2e-24
tr|A7R115|A7R115_VITVI Chromosome chr4 scaffold_333, whole genom...   115   2e-24
tr|B4FG13|B4FG13_MAIZE Putative uncharacterized protein OS=Zea m...    97   8e-19
tr|A8JIU3|A8JIU3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    52   3e-05
tr|A8JHK1|A8JHK1_CHLRE Predicted protein of CLR family (Fragment...    40   0.12 
tr|B7G082|B7G082_PHATR Predicted protein (Fragment) OS=Phaeodact...    34   6.4  
tr|B3LAW2|B3LAW2_PLAKH Putative uncharacterized protein OS=Plasm...    34   6.4  
tr|A9VAA3|A9VAA3_MONBE Predicted protein OS=Monosiga brevicollis...    34   8.3  

>tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_144824 PE=4 SV=1
          Length = 154

 Score =  119 bits (298), Expect = 2e-25
 Identities = 67/146 (45%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
 Frame = +1

Query: 196 SKATGNSAIDSSVSTGDLTGLYKKVLLPII-DRNPYLSEXXXXXXXXXXXXXKKYGAEIT 372
           ++A   SA D  V+   +T  +K VLLPII DRNPYLSE              K+GAEIT
Sbjct: 5   AQAQSQSASDG-VAVAGVTN-FKSVLLPIIMDRNPYLSEATRQAAASTTALATKFGAEIT 62

Query: 373 VVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXX 552
           VVVIDE++ ES +DHD R+KNIRWHL++                 PA +IGE+A      
Sbjct: 63  VVVIDEDSSESKEDHDTRMKNIRWHLSEGGFAEFKLMERIGEGKRPAVVIGEVADDMNMD 122

Query: 553 XXXXXMESIHSKHIDGNLLPEFVPCP 630
                M+++H+KHID NLL EFVPCP
Sbjct: 123 LVVLSMDAVHAKHIDSNLLAEFVPCP 148


>tr|Q9FKX3|Q9FKX3_ARATH Genomic DNA, chromosome 5, TAC clone:K2A18
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At5g66090 PE=2 SV=1
          Length = 210

 Score =  118 bits (296), Expect = 3e-25
 Identities = 63/145 (43%), Positives = 79/145 (54%)
 Frame = +1

Query: 196 SKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKKYGAEITV 375
           ++A    A  S V  GD     K +LLP+IDRNPYLSE             KKYGA+ITV
Sbjct: 60  AQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSEGTRQAAATTTSLAKKYGADITV 119

Query: 376 VVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXXX 555
           VVIDE  +ES  +H+ ++ NIRWHL++                   AIIGE+A       
Sbjct: 120 VVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGKKATAIIGEVADELKMEL 179

Query: 556 XXXXMESIHSKHIDGNLLPEFVPCP 630
               ME+IHSK+ID NLL EF+PCP
Sbjct: 180 VVMSMEAIHSKYIDANLLAEFIPCP 204


>tr|Q7XJ15|Q7XJ15_ORYSJ Os09g0541700 protein OS=Oryza sativa subsp.
           japonica GN=P0478E02.11 PE=2 SV=1
          Length = 194

 Score =  117 bits (293), Expect = 6e-25
 Identities = 60/134 (44%), Positives = 72/134 (53%)
 Frame = +1

Query: 229 SVSTGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKKYGAEITVVVIDENTKESI 408
           S    D     K VLLP+ DRNPYLSE             KKYGA ITVVVID+  KE  
Sbjct: 55  SALAADAFAQVKHVLLPVTDRNPYLSEGTRQAAATSASLAKKYGANITVVVIDDKPKEEF 114

Query: 409 DDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXXXXXXXMESIHSK 588
            +HD ++ +IRWHL++                 P AIIGE+A           ME+IHSK
Sbjct: 115 PEHDTQMSSIRWHLSEGGFTEFGLMERLGEGKKPTAIIGEVADELELDLVVLSMEAIHSK 174

Query: 589 HIDGNLLPEFVPCP 630
           H+DGNLL EF+PCP
Sbjct: 175 HVDGNLLAEFIPCP 188


>tr|A2Z3L9|A2Z3L9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32227 PE=4 SV=1
          Length = 194

 Score =  117 bits (293), Expect = 6e-25
 Identities = 60/134 (44%), Positives = 72/134 (53%)
 Frame = +1

Query: 229 SVSTGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKKYGAEITVVVIDENTKESI 408
           S    D     K VLLP+ DRNPYLSE             KKYGA ITVVVID+  KE  
Sbjct: 55  SALAADAFAQVKHVLLPVTDRNPYLSEGTRQAAATSASLAKKYGANITVVVIDDKPKEEF 114

Query: 409 DDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXXXXXXXMESIHSK 588
            +HD ++ +IRWHL++                 P AIIGE+A           ME+IHSK
Sbjct: 115 PEHDTQMSSIRWHLSEGGFTEFGLMERLGEGKKPTAIIGEVADELELDLVVLSMEAIHSK 174

Query: 589 HIDGNLLPEFVPCP 630
           H+DGNLL EF+PCP
Sbjct: 175 HVDGNLLAEFIPCP 188


>tr|Q8GWN7|Q8GWN7_ARATH Putative uncharacterized protein
           At5g66090/K2A18_17 OS=Arabidopsis thaliana
           GN=At5g66090/K2A18_17 PE=2 SV=1
          Length = 210

 Score =  115 bits (289), Expect = 2e-24
 Identities = 62/145 (42%), Positives = 78/145 (53%)
 Frame = +1

Query: 196 SKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKKYGAEITV 375
           ++A    A  S V  GD     K +LLP+IDRNPYLS              KKYGA+ITV
Sbjct: 60  AQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSGGTRQAAATTTGLAKKYGADITV 119

Query: 376 VVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXXX 555
           VVIDE  +ES  +H+ ++ NIRWHL++                   AIIGE+A       
Sbjct: 120 VVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGKKATAIIGEVADELKMEL 179

Query: 556 XXXXMESIHSKHIDGNLLPEFVPCP 630
               ME+IHSK+ID NLL EF+PCP
Sbjct: 180 VVMSMEAIHSKYIDANLLAEFIPCP 204


>tr|A7R115|A7R115_VITVI Chromosome chr4 scaffold_333, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00011736001
           PE=4 SV=1
          Length = 211

 Score =  115 bits (288), Expect = 2e-24
 Identities = 76/194 (39%), Positives = 101/194 (52%), Gaps = 8/194 (4%)
 Frame = +1

Query: 73  PVISCLSHTINFSLSSRR--RVPLTTHITGNWSKSCAPPVFLVSKATGNSAI----DSSV 234
           P IS L  + + S SS     +PL++  +   SK+    +F      G+ A     DS V
Sbjct: 12  PKISILPSSSSSSSSSPSIFSLPLSSSSSPLCSKTSKLSIFPGLLKLGHRAKSKPQDSEV 71

Query: 235 S-TGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKKYGAEITVVVIDENTKESID 411
           +   +    +K +LLP+ DRNPYLSE             KKYGA+ITVVVIDE  KESI 
Sbjct: 72  NLAAEAFTSFKHLLLPVTDRNPYLSEGTRQAAATTAALAKKYGADITVVVIDEKQKESIP 131

Query: 412 DHDLRIKNIRWHLAQ-XXXXXXXXXXXXXXXXXPAAIIGEIAXXXXXXXXXXXMESIHSK 588
           +HD ++ +IRWHL++                  P AIIGE+A           ME+IHSK
Sbjct: 132 EHDTQLSSIRWHLSEGGFQEFRVLERLGEGSSKPTAIIGEVADDLNLDLVVLSMEAIHSK 191

Query: 589 HIDGNLLPEFVPCP 630
           H+D NLL EF+PCP
Sbjct: 192 HVDANLLAEFIPCP 205


>tr|B4FG13|B4FG13_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 45/94 (47%), Positives = 58/94 (61%)
 Frame = +1

Query: 349 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 528
           KKYGA+ITVVVID+  KES+ +HD ++ +IRWHL++                 P  IIGE
Sbjct: 39  KKYGADITVVVIDDKPKESVPEHDTQMSSIRWHLSEGGFSEFRLMERLGEGQKPTVIIGE 98

Query: 529 IAXXXXXXXXXXXMESIHSKHIDGNLLPEFVPCP 630
           +A           ME+IHSKH+DGNLL EF+PCP
Sbjct: 99  VADEWDLDLVVLSMEAIHSKHVDGNLLAEFIPCP 132


>tr|A8JIU3|A8JIU3_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_154979 PE=4
           SV=1
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 31/92 (33%), Positives = 51/92 (55%)
 Frame = +1

Query: 175 APPVFLVSKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEXXXXXXXXXXXXXKK 354
           AP   +V +A    A   ++++ +LT  Y ++LL I+D NPYLS+             K 
Sbjct: 21  APRRSVVPRAAAPDAKAPAMASTELT--YNRLLLTILDANPYLSDGSRTAVATAAHMAKT 78

Query: 355 YGAEITVVVIDENTKESIDDHDLRIKNIRWHL 450
           Y +++TV+V+DE   ++ D    RI++I WHL
Sbjct: 79  YSSKVTVLVVDEPGTDNTDPAK-RIESITWHL 109


>tr|A8JHK1|A8JHK1_CHLRE Predicted protein of CLR family (Fragment)
           OS=Chlamydomonas reinhardtii GN=CLR10 PE=4 SV=1
          Length = 1595

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 424 RIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAI-IGEIAXXXXXXXXXXXMESIHSKHIDG 600
           RI++I WHL                   PA++ +G++A            E++H+KH+D 
Sbjct: 9   RIESITWHLKDRGCDNFDVVEKATTS--PASVLVGDMADEIGADMVVLSSEAVHAKHVDA 66

Query: 601 NLLPEFVPCP 630
           N L EFV CP
Sbjct: 67  NQLAEFVSCP 76


>tr|B7G082|B7G082_PHATR Predicted protein (Fragment) OS=Phaeodactylum
            tricornutum CCAP 1055/1 GN=PHATRDRAFT_36043 PE=4 SV=1
          Length = 3911

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73   PVISCLSHTINFSLSSRRRVPLTTHITGNWSKSC-APPVFLVSKATGNSAIDSSVSTGDL 249
            P+ S +S  +   + + RR  +TT   GNWS S  A   +L+S + GN    S    G+ 
Sbjct: 2879 PMNSLVSDLLPHGIRATRRGEMTTRRPGNWSNSSFAQGNYLMSTSNGNIVRSSPPLPGNH 2938

Query: 250  TGL 258
            TGL
Sbjct: 2939 TGL 2941