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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958311
Clone id TST39A01NGRL0030_K18
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_K18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGACTCCACTAAGATTGAAACGAAATCCACAAACCTTTTTAATTATTCATCGATTCCCC
GGGTAGTGGTAAGGTTCCAGTTCATACTGACTATGGCCAAGGGTTCAAATCTAGTCCCGC
CCGCGATCAATCATCTCTCAATGTTTGATTCCTTCCTCGTACAGAGGCCTCTTTTTCTCA
TGACCTGACAAGCCCACGCTTGTCTCACAGGCAAGTCTTTTCACCAATATTGAGAAAATG
ATGCCATATGAATACACAAAAAAAGGGGGGGTATTCCCCCTTCGCCTAAATACTCGGCTG
GATGTAACGGCGTGGGTTGTTACTGCGCAACTCCAACTGTGCACTGCGCGGAAATACTTC
TATCTTCTCCGGAATAGACGAGGGATCATTTTCCTAGCAAGTGATTCTGGGTGCAAGAAG
ACAAGCTAGATATGAGAATGCCAGGATCAATTACCGAAGAAGATAGAACTATTTCGTAAA
TTGCACAGACGAACTAGTTGGGATAGCCGAACCAGCTTTTAATTCATTTGAGGAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P41062
Definition sp|P41062|CP84_BP186 Uncharacterized 37.8 kDa protein in gpa 5'region OS=Enterobacteria phage 186
Align length 43
Score (bit) 33.5
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958311|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_K18, 5'
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41062|CP84_BP186 Uncharacterized 37.8 kDa protein in gpa 5'r...    33   0.66 
sp|Q93YR9|ARFP_ARATH Auxin response factor 16 OS=Arabidopsis tha...    30   7.3  

>sp|P41062|CP84_BP186 Uncharacterized 37.8 kDa protein in gpa
           5'region OS=Enterobacteria phage 186 GN=CP84 PE=3 SV=1
          Length = 334

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 261 KRGGIPPSPKYSAGCNGVGCYCATPTVHC-----AEILLSSPE 374
           KR GI P+P Y  GC+ VGC    P +H      AEI    PE
Sbjct: 211 KRHGIKPNPLYQQGCSRVGC---MPCIHARKSELAEIFARWPE 250


>sp|Q93YR9|ARFP_ARATH Auxin response factor 16 OS=Arabidopsis
           thaliana GN=ARF16 PE=2 SV=1
          Length = 670

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 KRGGIPPSPKYSAGCNGVGCYC 326
           KRGGI   P+YSAG N +G  C
Sbjct: 222 KRGGIGNGPEYSAGWNPIGGSC 243
tr_hit_id B2AKP5
Definition tr|B2AKP5|B2AKP5_PODAN Predicted CDS Pa_5_7850 OS=Podospora anserina
Align length 69
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958311|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_K18, 5'
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2AKP5|B2AKP5_PODAN Predicted CDS Pa_5_7850 OS=Podospora anse...    36   1.4  
tr|Q6D3W5|Q6D3W5_ERWCT Conserved phage protein OS=Erwinia caroto...    33   9.2  
tr|B1JNV0|B1JNV0_YERPY Phosphoadenosine phosphosulfate reductase...    33   9.2  
tr|B6QR91|B6QR91_PENMA Putative uncharacterized protein OS=Penic...    33   9.2  

>tr|B2AKP5|B2AKP5_PODAN Predicted CDS Pa_5_7850 OS=Podospora
           anserina PE=4 SV=1
          Length = 418

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -2

Query: 379 VYSGEDRSISAQCTVGVAQ*QPTPLHPAEYLG----EGGIPPLFLCIHMASFSQYW*KDL 212
           V+S    +++A CT+G +     P  P +Y+     E   PPL+LC  +  F+ +  ++ 
Sbjct: 316 VFSSAYCALAASCTIGQSDGFLKPRRPRDYVQLPSQENNRPPLYLCDQIDDFNSHVLQEP 375

Query: 211 PVRQAWACQ 185
           P  + W  Q
Sbjct: 376 PSTRGWVLQ 384


>tr|Q6D3W5|Q6D3W5_ERWCT Conserved phage protein OS=Erwinia
           carotovora subsp. atroseptica GN=ECA2628 PE=4 SV=1
          Length = 342

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 261 KRGGIPPSPKYSAGCNGVGCYCATPTVHC-----AEILLSSPE 374
           KR GI P+P Y  GC+ VGC    P +H      AEI    PE
Sbjct: 219 KRHGIKPNPLYEQGCSRVGC---MPCIHARKSELAEIFRRWPE 258


>tr|B1JNV0|B1JNV0_YERPY Phosphoadenosine phosphosulfate reductase
           OS=Yersinia pseudotuberculosis serotype O:3 (strain
           YPIII) GN=YPK_0891 PE=4 SV=1
          Length = 334

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 261 KRGGIPPSPKYSAGCNGVGCYCATPTVHC-----AEILLSSPE 374
           KR GI P+P Y  GC+ VGC    P +H      AEI    PE
Sbjct: 211 KRHGIKPNPLYQQGCSRVGC---MPCIHARKSELAEIFSRWPE 250


>tr|B6QR91|B6QR91_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_043300 PE=4
           SV=1
          Length = 604

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 301 PAEYLGEGGIPPLFLCIHMASFSQYW*KDLPVRQAWACQ 185
           P  ++G G IPPLFLCI+         + + + Q+W CQ
Sbjct: 494 PTFHMGPGIIPPLFLCINKCRDWNLRQEAMSLLQSWPCQ 532