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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958313
Clone id TST39A01NGRL0030_K20
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_K20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCAGCAAACATGACTTCTGCTAGAATGTATGCAGAGGGATTAGCTTCAACGAGCTGCCC
GGTGGCAGTGTTTGCAAGGGGCGCATCAGGGGTTTCTCCGCGTAGTTGGGTGCAAACAAG
CAGGCGGTCCCTCCGGGTGGTTTGCCACAGCGATCCTGCTGGAGGTTGTTGTGGCGGAAG
CGGTAGCGGTAGCAGTAGCAGTAGTGAAAGTGGCTCTAGCTGCAGCAGCCATGGAAAGAA
TAGCTTATCTAATCTTGGCAAGGAGTTTGAGCACCTCGTCGCCACGAACACATTGCTTGA
ATTTGAGAAGGAATATGTGGCGGCACCGATGGAAGGCAAGATCACAAGGGACATCATGGA
AACAGTGATGCATGCAGGCCCCGATGAAAATACTTCTGGCAAAGAGACATTTCTTGACAT
CAATGAGATACTAAGGGATGCGACGAACATGAGCGAAGGCGATTTCATCTTTTCTGAGAA
CCCTGATTTTGTGATTGTGTAATTACAACTGTGGAACAGAAGGATGAGAAGTCTACTGAC
ACAACAAGATATCTCTGGAGAGGAGAAAATTGAGAAGGTTTGAGTTCTCAACAATGGGCT
ATGAGGCAATAATGGGAAGGCACCGATTGTGGGCTTGTATAGGTTTT
■■Homology search results ■■ -
sp_hit_id Q03DS2
Definition sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Align length 85
Score (bit) 34.7
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958313|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_K20, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosace...    35   0.44 
sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282...    30   8.3  

>sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosaceus
           (strain ATCC 25745 / 183-1w) GN=arcA PE=3 SV=1
          Length = 407

 Score = 34.7 bits (78), Expect = 0.44
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 272 HLVATNTLLEFEKEYVAAPM---EGKITRDIMETVMHAGPDENTSGKETFLDINEILRDA 442
           HL    T++ +E+  V   +   +GK+       V+H G D   +  E   DI E+L+ A
Sbjct: 268 HLDTVFTMINYEQFTVHPAILTGDGKVDN----WVLHPGKDGEIT-MEHHTDIKEVLKKA 322

Query: 443 TNMSEGDFIFSENPDFVIV*LQLWN 517
            N SE D I + N D ++   + WN
Sbjct: 323 LNKSEIDLIPTGNGDPIVAPREQWN 347


>sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282129
           OS=Dictyostelium discoideum GN=DDB_G0282129 PE=4 SV=1
          Length = 765

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 644 TYTSPQSVPSHYCLIAHC*ELKPSQ-FSPLQRYLVVSVDFSSFCSTVVITQSQNQGSQKR 468
           +Y SPQS P     +       PS   SP+Q   +V    SSF S   I Q Q Q  Q++
Sbjct: 324 SYDSPQSSPPRQSSLLISTSSPPSPPLSPIQPTNIVQSSSSSFSSPTYIQQQQQQQQQQQ 383
tr_hit_id A9NMZ4
Definition tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 95
Score (bit) 62.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958313|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_K20, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea...    62   3e-08
tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|A7KQG6|A7KQG6_GYRTH NADH dehydrogenase subunit 5 OS=Gyrodacty...    40   0.16 
tr|A2D6F3|A2D6F3_GYRSA NADH dehydrogenase subunit 5 OS=Gyrodacty...    37   1.0  
tr|Q55GV7|Q55GV7_DICDI Putative uncharacterized protein OS=Dicty...    35   3.9  
tr|B3T0G8|B3T0G8_9ZZZZ Putative uncharacterized protein OS=uncul...    35   5.1  
tr|A9ILE1|A9ILE1_BORPD Putative membrane protein (TRAP-type tran...    35   5.1  
tr|A1DS21|A1DS21_PEDPE Arginine deiminase (Fragment) OS=Pediococ...    35   5.1  
tr|B5SR79|B5SR79_9EUTH Apolipoprotein B (Fragment) OS=Suncus mon...    35   5.1  
tr|B5SR78|B5SR78_SUNMU Apolipoprotein B (Fragment) OS=Suncus mur...    35   5.1  
tr|B5SR53|B5SR53_SUNMU Apolipoprotein B (Fragment) OS=Suncus mur...    35   5.1  
tr|A9CD73|A9CD73_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   5.1  
tr|A9CD29|A9CD29_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   5.1  
tr|A9CD25|A9CD25_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   5.1  
tr|Q9B6Q8|Q9B6Q8_9HEMI ATP synthase subunit a OS=Drepanosiphum o...    34   6.7  
tr|Q9UD04|Q9UD04_HUMAN GHDTA=GROWTH hormone gene-derived transcr...    34   6.7  
tr|Q32Z12|Q32Z12_9NOST Polyketide synthase ketosynthase domain (...    34   8.7  
tr|Q32Z11|Q32Z11_9NOST Polyketide synthase ketosynthase domain (...    34   8.7  
tr|A6DLK7|A6DLK7_9BACT Putative uncharacterized protein OS=Lenti...    34   8.7  
tr|B6P4J2|B6P4J2_BRAFL Putative uncharacterized protein (Fragmen...    34   8.7  

>tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 164

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
 Frame = +2

Query: 230 HGKNS---LSNLGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDE-NTS 397
           HGK+S   LS +GKEFE +VA  TL E EKEY    M+G ITRD  + VM+ GP      
Sbjct: 74  HGKSSVPDLSKIGKEFETMVARATLSEREKEYNTVEMKGNITRDDFKEVMNIGPSRFAEE 133

Query: 398 GK-ETFLDINEILRDATNMSEGDFIFSENPDFVIV 499
           GK ET +D+  +L +  N    +F F +NP+ V +
Sbjct: 134 GKGETVIDLQAMLNELKN---DNFAF-DNPEDVFI 164


>tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169878 PE=4 SV=1
          Length = 575

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 34/47 (72%)
 Frame = +2

Query: 245 LSNLGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPD 385
           ++N+G EFE++V+  T+ EFEKEY    M+G ITRD++  VM+  P+
Sbjct: 91  IANVGAEFENMVSRATMEEFEKEYDTGEMQGTITRDVVAEVMNEMPE 137


>tr|A7KQG6|A7KQG6_GYRTH NADH dehydrogenase subunit 5 OS=Gyrodactylus
           thymalli GN=ND5 PE=4 SV=1
          Length = 516

 Score = 39.7 bits (91), Expect = 0.16
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = -3

Query: 567 FSSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLP--- 397
           FSS  I+CCV   L+++  S  + +T S   E M++P+ +     S +L++  V L    
Sbjct: 155 FSSVSIACCVFICLLIISKSAVFPLT-SWLLEAMRAPTPVSSLVHSSTLVAAGVVLVCRY 213

Query: 396 EVF-SSGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSN 265
           EV+  +GP    + ++ LV +     A + +S++  V   + C+N
Sbjct: 214 EVYLLNGPYSYALLVLCLVTISMSATAAFFYSDTKKVIALSTCNN 258


>tr|A2D6F3|A2D6F3_GYRSA NADH dehydrogenase subunit 5 OS=Gyrodactylus
           salaris GN=nad5 PE=4 SV=1
          Length = 516

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = -3

Query: 567 FSSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSL---- 400
           FSS  I+CCV   L+++  S  + +T S   E M++P+ +     S +L++  + L    
Sbjct: 155 FSSVSIACCVFICLLIISKSAVFPLT-SWLLEAMRAPTPVSSLVHSSTLVAAGIVLVCRY 213

Query: 399 PEVFSSGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSN 265
                +GP    + ++ L+ +     A + +S++  V   + C+N
Sbjct: 214 ETYLLNGPYSYALLVLCLLTISMSATAAFFYSDTKKVVALSTCNN 258


>tr|Q55GV7|Q55GV7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0189323 PE=4 SV=1
          Length = 200

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = +2

Query: 287 NTLLEFEKEYVAAPMEGKIT-----RDIMETVMHAGPDENTSGKETFLDINEILRDATNM 451
           NT+LE E+++       K+      + ++ TV  +  D+N    +    +N++L+ +TN 
Sbjct: 49  NTILE-EQDFKIPQTPKKVEDKQYLKSMISTVFESDKDDNEKANQL---MNQLLKSSTNF 104

Query: 452 SEGDFIFSENPD 487
           +E D +F+EN D
Sbjct: 105 NENDTLFNENDD 116


>tr|B3T0G8|B3T0G8_9ZZZZ Putative uncharacterized protein
           OS=uncultured marine microorganism HF4000_005I08
           GN=ALOHA_HF4000005I08ctg1g4 PE=4 SV=1
          Length = 139

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = -3

Query: 564 SSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLPEVFS 385
           +SP  +C V+     +  S   +I  +     + SP+     ++S S  +R+ S   VF+
Sbjct: 7   TSPAFACAVAMSASAVARSSASSIVFALARASLTSPAFACAVAMSASASARSSSSSIVFA 66

Query: 384 SGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSNSLP 256
              A +T    +  +  S+ A+  S S+SS VF   R + + P
Sbjct: 67  VARAALTSPAFACAVAMSVSASARS-SSSSIVFAVARAALTSP 108


>tr|A9ILE1|A9ILE1_BORPD Putative membrane protein (TRAP-type
           transport system, large permease component)
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet2230 PE=4 SV=1
          Length = 427

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -3

Query: 525 ILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLPEVFS--SGPACITVSMM 352
           I LF      + +SGF+E+M S   ++++ L   LM  N+    +FS  SG +  T + +
Sbjct: 59  IPLFIMLGEVLLRSGFAERMYSAMSLWLSWLPGGLMHANIGASTLFSATSGSSVATAATV 118

Query: 351 SLVILPSIGAATYS 310
             V LP I    Y+
Sbjct: 119 GTVALPQIKKYGYN 132


>tr|A1DS21|A1DS21_PEDPE Arginine deiminase (Fragment) OS=Pediococcus
           pentosaceus GN=ADI PE=4 SV=1
          Length = 89

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 272 HLVATNTLLEFEKEYVAAPM---EGKITRDIMETVMHAGPDENTSGKETFLDINEILRDA 442
           HL    T++ +E+  V   +   +GK+       V+H G D   +  E   DI E+L+ A
Sbjct: 5   HLDTVFTMINYEQFTVHPAILTGDGKVDN----WVLHPGKDGEIT-MEHHTDIKEVLKKA 59

Query: 443 TNMSEGDFIFSENPDFVIV*LQLWN 517
            N SE D I + N D ++   + WN
Sbjct: 60  LNKSEIDLIPTGNGDPIVAPREQWN 84


>tr|B5SR79|B5SR79_9EUTH Apolipoprotein B (Fragment) OS=Suncus
           montanus PE=4 SV=1
          Length = 283

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -3

Query: 504 NYTITKSGFSEKMKSPSLMFVA--SLSISLMSRNVSLPEVFSSGPACITVSMMSLVILPS 331
           N+TI  SGF     + +L F+   +L +   S  +SLPE          +SM   + +P+
Sbjct: 96  NFTILDSGFFVPSYTLALPFLELPALQVPKYSLELSLPEFE-------VLSMPRNIFIPA 148

Query: 330 IGAATYSFSNSSNV 289
           +G  TY FS  SNV
Sbjct: 149 LGNITYDFSFKSNV 162


>tr|B5SR78|B5SR78_SUNMU Apolipoprotein B (Fragment) OS=Suncus
           murinus PE=4 SV=1
          Length = 282

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -3

Query: 504 NYTITKSGFSEKMKSPSLMFVA--SLSISLMSRNVSLPEVFSSGPACITVSMMSLVILPS 331
           N+TI  SGF     + +L F+   +L +   S  +SLPE          +SM   + +P+
Sbjct: 95  NFTILDSGFFVPSYTLALPFLELPALQVPKYSLELSLPEFE-------VLSMPRNIFIPA 147

Query: 330 IGAATYSFSNSSNV 289
           +G  TY FS  SNV
Sbjct: 148 LGNITYDFSFKSNV 161