DK958326 |
Clone id |
TST39A01NGRL0030_L09 |
Library |
TST39 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_L09. 5' end sequence. |
Accession |
DK958326 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL226Contig1 |
Sequence |
ATACGCAGCTCTTCGCCTGTTCATTTCCTGCACACATACGTTTCCTTGCCAGCAACAACA GGATTCGGAATCCTTCCGTCATCGCCGACGATGGCTGTCGTTTTCAAGATCAAGCATGGA GACACCCTCCGCAGATGGGTTGTTTCTGAATCAGTAGTCAATGCAGAGATGTTCCCAATT ACACTGGAGCAATTGCAAGCCAAAATCAGGGAGCTCTTCCAGCTCTCTCCTTCAGCTGTG CTTGCAATCACTTATGTAGACAAGGATAATGATGTTGTTACCCTGGGGGAAGATCGTGAT CTGGTTGATGCATGCCTTGTCCAACGCCTCAACCCGCTTCGCCTAGAGGTTCAGGTCCTG GAATCAAAGCCTGGCGGAACTGATCGTAGGAACCAGCCAGTGGGCAATTTCAACATAGAA GGCTTGCTAAAGCTTTTGTTCCCTCATGCAACAGCTGAATCCCTGCAAAGTTTTCTAGAG AGACATGCCAAATCTTTCGACTCGTCACTACCTACTGAGACTCTTATTTTGAAGGCTCAG GATGCATTCAAGGACTTTTTAGCTCATGCAGCTAGGCCAGAGTTTCACAAATTTGGCACA TCCGATAAGCCTGCCTATCATCATCCGTACAAACACCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q47WG1 |
Definition |
sp|Q47WG1|LEUD_COLP3 3-isopropylmalate dehydratase small subunit OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) |
Align length |
45 |
Score (bit) |
38.1 |
E-value |
0.039 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958326|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_L09, 5' (638 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q47WG1|LEUD_COLP3 3-isopropylmalate dehydratase small subunit... 38 0.039 sp|P40995|SCD1_SCHPO Rho guanine nucleotide exchange factor scd1... 33 1.2 sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein O... 33 1.2 sp|P11433|CDC24_YEAST Cell division control protein 24 OS=Saccha... 33 1.6 sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thal... 32 3.6 sp|P32527|ZUO1_YEAST Zuotin OS=Saccharomyces cerevisiae GN=ZUO1 ... 31 4.7 sp|A6SUQ8|SYV_JANMA Valyl-tRNA synthetase OS=Janthinobacterium s... 31 4.7 sp|Q1MSE5|ISPG_LAWIP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate... 31 4.7 sp|Q19802|FKH5_CAEEL Putative forkhead-related transcription fac... 31 4.7 sp|A4G1V2|SYV_HERAR Valyl-tRNA synthetase OS=Herminiimonas arsen... 31 6.2 sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-c... 31 6.2
>sp|Q47WG1|LEUD_COLP3 3-isopropylmalate dehydratase small subunit OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=leuD PE=3 SV=1 Length = 198
Score = 38.1 bits (87), Expect = 0.039 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = +1
Query: 157 VNAEMFPITLEQLQAKIRELFQLSPSAVLAITYVDKDNDVVTLGE 291 +N + PI L + A+I +LF+LSP+A L +T VD N+VVT GE Sbjct: 114 INVGLLPIKLTE--AEIEQLFKLSPNAQLTLT-VDLPNNVVTCGE 155
>sp|P40995|SCD1_SCHPO Rho guanine nucleotide exchange factor scd1 OS=Schizosaccharomyces pombe GN=scd1 PE=1 SV=2 Length = 872
Score = 33.1 bits (74), Expect = 1.2 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Frame = +1
Query: 46 LPATTGFGILPSSPTMAVVFKIKHGDTLRRWVVSESVVNAEMFPITLEQLQAKIRELFQL 225 LP+T + SS + ++ + +R + S+V IT ++L AK+ +L Sbjct: 750 LPSTKHTSLSSSSTSTSLSVRNTTNVKIRLRLHEVSLVLVVAHDITFDELLAKVEHKIKL 809
Query: 226 SPSAVLAIT------YVDKDNDVVTLGEDRDLV---DACLVQRLNPL 339 A+ YVD+D D +T+ D D++ + C + ++P+ Sbjct: 810 CGILKQAVPFRVRLKYVDEDGDFITITSDEDVLMAFETCTFELMDPV 856
>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe GN=mug70 PE=1 SV=1 Length = 730
Score = 33.1 bits (74), Expect = 1.2 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +1
Query: 238 VLAITYVDKDNDVVTLGEDRDLVDACLVQRLNPL-RLEVQVLESKPGGTDRRNQPV 402 ++ +TY+D + DVV L D DL +A L+ R L RLEV+ + + + + P+ Sbjct: 612 LVTLTYIDDEGDVVELVSDSDLREAILLARRRGLPRLEVRGVAAFTNHLESSHPPI 667
>sp|P11433|CDC24_YEAST Cell division control protein 24 OS=Saccharomyces cerevisiae GN=CDC24 PE=1 SV=2 Length = 854
Score = 32.7 bits (73), Expect = 1.6 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Frame = +1
Query: 79 SSPTMAVVFKIKHGDTLRRWVVSESVVNAEMFPITLEQ----------LQAKIRELFQLS 228 S P +++F+I + + S + ++E+F + +E+ + +KI + Sbjct: 756 SIPESSILFRISYNNN------SNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNN 809
Query: 229 PSAVLAITYVDKDNDVVTLGEDRD 300 S + I Y D+D D V LG D D Sbjct: 810 ISPITKIKYQDEDGDFVVLGSDED 833
>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2 Length = 859
Score = 31.6 bits (70), Expect = 3.6 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Frame = +1
Query: 187 EQLQAKIRELFQ-----LSPSAVLAITYVDKDNDVVTLGEDRDLVDACLVQRLNPLRLEV 351 E+L A++ LF+ ++P I Y D++ND++ +G+D C+V+++ + + Sbjct: 758 EELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIF-IYTKE 816
Query: 352 QVLESKPGGTDRRNQ 396 +V + PG R++ Sbjct: 817 EVRKMNPGTLSCRSE 831
>sp|P32527|ZUO1_YEAST Zuotin OS=Saccharomyces cerevisiae GN=ZUO1 PE=1 SV=1 Length = 433
Score = 31.2 bits (69), Expect = 4.7 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +1
Query: 337 LRLEVQVLESKPGGTDRRNQPVGNFNIEGLLKLLFPHATAESLQSFLERHAKSFD-SSLP 513 + +EV +K R +PVG F ++ + L H +E + E++ K+ D S++ Sbjct: 11 ITVEVNSSATKTPFVRRPVEPVGKFFLQHAQRTLRNHTWSEFERIEAEKNVKTVDESNVD 70
Query: 514 TETLILKAQDAFKDFLAHAAR 576 + L+ + A +D L H AR Sbjct: 71 PDELLFDTELADEDLLTHDAR 91
>sp|A6SUQ8|SYV_JANMA Valyl-tRNA synthetase OS=Janthinobacterium sp. (strain Marseille) GN=valS PE=3 SV=1 Length = 965
Score = 31.2 bits (69), Expect = 4.7 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 13/83 (15%) Frame = +1
Query: 238 VLAITYVDKD--NDVVTLGEDRDLVDACLVQRLNP-----LRLEVQVLESKPG---GTDR 387 ++A YVDK+ V + D D + QR N L L+ ++ E+ P G DR Sbjct: 276 IIADDYVDKEFGTGCVKITPAHDFNDYAVGQRHNLDKISILTLDAKINENAPAAYQGLDR 335
Query: 388 ---RNQPVGNFNIEGLLKLLFPH 447 R Q V + + +GLL+L+ PH Sbjct: 336 FAARKQIVADLDAQGLLELVKPH 358
>sp|Q1MSE5|ISPG_LAWIP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=ispG PE=3 SV=1 Length = 359
Score = 31.2 bits (69), Expect = 4.7 Identities = 30/108 (27%), Positives = 50/108 (46%) Frame = +1
Query: 28 LHTYVSLPATTGFGILPSSPTMAVVFKIKHGDTLRRWVVSESVVNAEMFPITLEQLQAKI 207 LH V+ + G + SS + ++ GDTLR + + V E P+ E L+A Sbjct: 198 LHLGVTEAGSLIRGTVKSSVGLGILLSEGIGDTLRISLTEDPV---EEVPVAWEILRAL- 253
Query: 208 RELFQLSPSAVLAITYVDKDNDVVTLGEDRDLVDACLVQRLNPLRLEV 351 L + P + + + D++ L +D V+ACLV PL++ V Sbjct: 254 -GLRRRGPEIIACPSCGRAEIDLIRLTKD---VEACLVNEKTPLKIAV 297
>sp|Q19802|FKH5_CAEEL Putative forkhead-related transcription factor fkh-5 OS=Caenorhabditis elegans GN=fkh-5 PE=2 SV=1 Length = 461
Score = 31.2 bits (69), Expect = 4.7 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2
Query: 2 YAALRLFISCTHTFPCQQQQDSESFRHRRRWLSFSRSSMETPSA 133 Y L F+ T PC Q DS ++ H + F+R S TP + Sbjct: 55 YLYLTYFVMSQQTLPCFQAADSYNYSHSLPKVQFARFSKYTPQS 98
>sp|A4G1V2|SYV_HERAR Valyl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=valS PE=3 SV=1 Length = 969
Score = 30.8 bits (68), Expect = 6.2 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 13/83 (15%) Frame = +1
Query: 238 VLAITYVDKD--NDVVTLGEDRDLVDACLVQRLNPLRLEVQVLESKPG--------GTDR 387 ++A YVDK+ V + D D + QR N ++ + L++K G DR Sbjct: 276 IIADDYVDKEFGTGCVKITPAHDFNDYAVGQRHNLDKISILTLDAKINEHAPAAYQGMDR 335
Query: 388 ---RNQPVGNFNIEGLLKLLFPH 447 R Q V + + +GLL+L+ PH Sbjct: 336 YAARKQIVADLDAQGLLELVKPH 358
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SHX9 |
Definition |
tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
92 |
Score (bit) |
88.6 |
E-value |
3.0e-16 |
Report |
|