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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958377
Clone id TST39A01NGRL0030_N13
Library
Length 658
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_N13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCACACGCCACACGCGCCACTCCACTGCCGTAGGGTTCTGCTTCATCCCAGCCTGCTAT
GGCAGCTTCTCAGCTGCACTCATCATTTTCACCTTGCATTCGGCAGCAAACACAGAAGAT
TGTGCGGGAGAAGCAAGGTGTGACATTTTCGCTGGCCACTCGACAAGGGCTTGCCTTTCC
TGTACGTGTTTCCAGTGGCCCTCTTTACGCCATGGCAGCCTCTACTCTGCAGCAACAGGT
TGAGGTTTGTGAGAAGCAAGAGGTCCTTGAAAAGGAAGAGCAGGCATCAGGAGCTCAATT
GTCTAGGATTGAAATTCGAACTCTACGGGGCTGCAGGCTCGGAATCGCCATGTATCCTGA
CTTTGTTTATAATGCAGAGGGAGGTGGAGGTCCTGGAAGTGCAGAGGAGCTTCCTGATGG
TAAACTGGCAGTTGAATTCGATATCAAGAGTCTTTACATTCCGGCTGTGGAATGGCGGAC
CACCAAGTTCCTTGGATTGCCATTGCCCCCTTTCCTTTGCATACAGGTTGTTCCCCAGTC
TCTGAAGGGCTTCATCGAGCGGGCCAGAGGAAAGGTGGAGCTGGAGTTCTCAGCCAATTT
TTTATTTTCCGTGGGCTCTTTGTATCGTGCTCCGCCTCTTGTGGTGAACACACTGTTG
■■Homology search results ■■ -
sp_hit_id Q9ULX3
Definition sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
Align length 46
Score (bit) 35.8
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958377|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_N13, 5'
         (658 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN...    36   0.20 
sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN...    35   0.35 
sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicul...    33   1.0  
sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=N...    32   3.8  
sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1 OS=Di...    31   5.1  

>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
           GN=NOB1 PE=1 SV=1
          Length = 412

 Score = 35.8 bits (81), Expect = 0.20
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 440 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 306
           ++   + H E PLH    HLP   K  Q+T +   AC P   EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSS 156


>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii
           GN=NOB1 PE=2 SV=1
          Length = 411

 Score = 35.0 bits (79), Expect = 0.35
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 440 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 306
           ++   + H E PLH    HLP   K  Q+T +   AC P   EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKPPQETEKGHPACEPENLEFSS 156


>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca
           fascicularis GN=NOB1 PE=2 SV=1
          Length = 412

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 440 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 306
           ++   + H E PLH    HLP   K  Q+  +   AC P   EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKSPQEAEKGHPACEPENLEFSS 156


>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1
           PE=2 SV=1
          Length = 413

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 440 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWRFR--ACSPVEFEFQS 306
           ++   + H E PLH    HLP   K  ++T   R  A  P + EF S
Sbjct: 111 KVSSSIQHPETPLHVSGFHLPSKPKPPRETVEHRHPASEPEDLEFSS 157


>sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1
            OS=Dictyostelium discoideum GN=splA PE=1 SV=3
          Length = 2410

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 508  PFPLHTGCSPVSEGLHRAGQRKGGAGV---LSQFFIFRG--LFVSCSASCGEHT 654
            PF  H G  P S G    G++ GG+ +      FF F G  +  SC   CG +T
Sbjct: 1601 PFIKHIGREPKSYGFSSEGEKYGGSEIGEPYGPFFFFDGDSIASSCVIGCGINT 1654
tr_hit_id Q6EP75
Definition tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica
Align length 121
Score (bit) 129.0
E-value 1.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958377|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_N13, 5'
         (658 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subs...   129   1e-28
tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza...   129   1e-28
tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea m...   125   3e-27
tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Popul...   124   5e-27
tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella paten...   124   7e-27
tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole geno...   121   4e-26
tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella paten...   117   8e-25
tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomit...   117   8e-25
tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromos...   101   4e-20
tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synec...   100   1e-19
tr|A2CAI5|A2CAI5_PROM3 Putative uncharacterized protein OS=Proch...    95   3e-18
tr|Q7V858|Q7V858_PROMM Putative uncharacterized protein MTG10.17...    95   4e-18
tr|A2BZJ7|A2BZJ7_PROM1 Putative uncharacterized protein OS=Proch...    92   3e-17
tr|A8HPS9|A8HPS9_CHLRE Putative uncharacterized protein OS=Chlam...    91   5e-17
tr|A9BBB2|A9BBB2_PROM4 Putative uncharacterized protein OS=Proch...    89   2e-16
tr|Q56YA7|Q56YA7_ARATH Putative uncharacterized protein At5g6214...    89   3e-16
tr|Q46HZ5|Q46HZ5_PROMT Putative uncharacterized protein OS=Proch...    88   4e-16
tr|B5IJQ2|B5IJQ2_9CHRO Putative uncharacterized protein OS=Cyano...    85   5e-15
tr|Q7VAI6|Q7VAI6_PROMA Uncharacterized conserved protein OS=Proc...    66   2e-09
tr|A8I1H0|A8I1H0_CHLRE Predicted protein (Fragment) OS=Chlamydom...    39   0.37 
tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa...    36   2.4  
tr|Q8S0M1|Q8S0M1_ORYSJ Receptor protein kinase-like OS=Oryza sat...    34   7.0  
tr|Q0JH06|Q0JH06_ORYSJ Os01g0892200 protein OS=Oryza sativa subs...    34   7.0  
tr|A3A0F6|A3A0F6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.0  
tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.0  

>tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp.
           japonica GN=P0135D07.45 PE=2 SV=1
          Length = 256

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/121 (54%), Positives = 85/121 (70%), Gaps = 4/121 (3%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 475
           +E RT  GCRLGI+ YPDF YNA+          S E+   G + VEFD+ SLYIPA+  
Sbjct: 75  VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 476 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 655
            TTKFLGLPLPPFL I ++P++L+G I+   G+V+L+F + F FSVGS+YRAPPL V+T 
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 656 L 658
           L
Sbjct: 193 L 193


>tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08458 PE=4 SV=1
          Length = 256

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/121 (54%), Positives = 85/121 (70%), Gaps = 4/121 (3%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 475
           +E RT  GCRLGI+ YPDF YNA+          S E+   G + VEFD+ SLYIPA+  
Sbjct: 75  VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 476 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 655
            TTKFLGLPLPPFL I ++P++L+G I+   G+V+L+F + F FSVGS+YRAPPL V+T 
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 656 L 658
           L
Sbjct: 193 L 193


>tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 270

 Score =  125 bits (313), Expect = 3e-27
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 6/123 (4%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX------SAEELPDGKLAVEFDIKSLYIPAV 469
           +E RT  GCRLGIA YPDF YNA+            S E+   G + V+FD+ +LYIP +
Sbjct: 85  VEFRTRDGCRLGIARYPDFAYNAQGGRGVGAGRGSKSGEDDGIGTVLVDFDVATLYIPPM 144

Query: 470 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 649
              TT+FLGLPLPP+L I ++P++L G I+RA G V+L+F + F FSVGS+Y+APPL V 
Sbjct: 145 SGATTRFLGLPLPPYLKIDILPEALGGTIDRATGHVDLKFRSRFCFSVGSVYKAPPLFVE 204

Query: 650 TLL 658
           T L
Sbjct: 205 TTL 207


>tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 237

 Score =  124 bits (311), Expect = 5e-27
 Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 4/121 (3%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGK----LAVEFDIKSLYIPAVEW 475
           +  +TL GC+LGI+ YPDF YNA+      +  +  D      ++V FD+K+LYIP +  
Sbjct: 54  VNFKTLGGCKLGISRYPDFEYNAQGGTGTGTCTKAKDSSDLNTVSVSFDMKTLYIPPLTS 113

Query: 476 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 655
            TTKFLGLPLPPFL I +VP+  +G I++  GKV+LEF A F FSVG++YRAPPL+V T 
Sbjct: 114 GTTKFLGLPLPPFLKIDMVPELFQGTIDQDSGKVDLEFMAKFWFSVGTIYRAPPLLVKTR 173

Query: 656 L 658
           L
Sbjct: 174 L 174


>tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163179 PE=4 SV=1
          Length = 263

 Score =  124 bits (310), Expect = 7e-27
 Identities = 59/115 (51%), Positives = 79/115 (68%)
 Frame = +2

Query: 314 IRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTKFL 493
           +RT +GC LG++ YPDFVYNAE       A ++ DG+ +V+FD   + IP V +RTT  L
Sbjct: 88  LRTTKGCGLGVSRYPDFVYNAEGGGGRGKAVKMEDGRWSVKFDAAEVNIPDVGFRTTTLL 147

Query: 494 GLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLL 658
           G+PLPP + I++VP+ L+G ++R  GKVEL F A F FS G LYR  PL+V TLL
Sbjct: 148 GIPLPPPIKIEIVPEFLEGIVDRDTGKVELNFLAKFFFSTGPLYRPSPLIVETLL 202


>tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007419001
           PE=4 SV=1
          Length = 240

 Score =  121 bits (303), Expect = 4e-26
 Identities = 64/123 (52%), Positives = 84/123 (68%), Gaps = 6/123 (4%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS--AEELPDGKL----AVEFDIKSLYIPAV 469
           ++ RTL  C+LGI+ YPDF YNAE      +  A  + D  L    +V FD+K+LYIP +
Sbjct: 56  VKFRTLGACKLGISRYPDFEYNAEGGTGTGTGTAPVVEDNGLKDQVSVCFDLKTLYIPPL 115

Query: 470 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 649
              T++FLGLP PPFL I +VP+  +G I R  GKV+LEF A FLFSVG++YRAPPL+V 
Sbjct: 116 TTATSRFLGLPFPPFLRIDIVPELFQGNISRESGKVDLEFKAKFLFSVGNIYRAPPLMVA 175

Query: 650 TLL 658
           T+L
Sbjct: 176 TVL 178


>tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172769 PE=4 SV=1
          Length = 266

 Score =  117 bits (292), Expect = 8e-25
 Identities = 56/117 (47%), Positives = 78/117 (66%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 487
           + +RT +GC LGI++YPDFVYNAE       A +L DG   V+FD   + IP V +RTTK
Sbjct: 87  VVLRTTKGCGLGISVYPDFVYNAEGGGGSGKAVKLSDGCWRVQFDATEINIPDVSFRTTK 146

Query: 488 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLL 658
            L +P+PP + I++VP +L+G ++   GK+ L F + F FS   LYR PPLVV+T+L
Sbjct: 147 LLSVPIPPPIRIKIVPDTLEGTVDLETGKIVLRFQSKFYFSATDLYRPPPLVVDTVL 203


>tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_138615 PE=4 SV=1
          Length = 179

 Score =  117 bits (292), Expect = 8e-25
 Identities = 55/117 (47%), Positives = 77/117 (65%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 487
           +E+RT +GC LG++ YPDFVY+AE       A +L DG+  V FD   L+IP V +RT  
Sbjct: 2   VELRTTKGCGLGVSRYPDFVYDAEGGGGSGKAVKLSDGRWRVHFDAAELHIPDVSFRTAT 61

Query: 488 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLL 658
            LG+P+PP + I++V  SL+G ++R  GK+EL F + F FS    Y  PPLVV+T+L
Sbjct: 62  LLGVPIPPPIRIEIVTDSLEGTVDRDIGKIELRFQSRFYFSATRFYEPPPLVVDTVL 118


>tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MTG10 (At5g62140) OS=Arabidopsis thaliana
           GN=At5g62140 PE=2 SV=1
          Length = 241

 Score =  101 bits (252), Expect = 4e-20
 Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 7/127 (5%)
 Frame = +2

Query: 299 LSRIEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPD------GKLAVEFDIKSLYI 460
           L  +  +T+   +LGI+ YPDF Y+        +A+++ D       +L+V F++ +LYI
Sbjct: 51  LYSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYI 110

Query: 461 PAVEWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSV-GSLYRAPP 637
           P++  +TTKFLG PLPPFL I + P+  +G I +  GKVELEF A F F+  G +YRAP 
Sbjct: 111 PSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPA 170

Query: 638 LVVNTLL 658
           LVV T+L
Sbjct: 171 LVVRTVL 177


>tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein
           OS=Synechococcus sp. WH 5701 GN=WH5701_04020 PE=4 SV=1
          Length = 208

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
 Frame = +2

Query: 308 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS-AEELPDGKLAVEFDIKSLYIPAVEWRTT 484
           +++ TL GC L IA YP F Y+A          +   DG+  + F    L IP ++WR+T
Sbjct: 9   LQLSTLAGCGLAIAGYPRFRYDARGGGGSAQLGQPSGDGRRPLRFQPDGLSIPPLDWRST 68

Query: 485 KFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLL 658
           + LGLPLPP L I + P+ L+G ++ A G + L F A FLF VGSLY APPL+V T L
Sbjct: 69  RVLGLPLPPGLSISIEPEQLEGVLDPATGSLALTFRARFLFRVGSLYCAPPLLVATEL 126