DK958408 [AcEST]

DK958408
Clone id	TST39A01NGRL0030_O20
Library	TST39
Length	633
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_O20. 5' end sequence.
Accession	DK958408
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL1703Contig1
Sequence	CAGCATCGCGCAGCGAAAGAGAGCAGAGCGCTCGCGCACAAGAATGGAGCTACACAGATT GTCTTTCTGCGGTAGTCGGATAAGACGAGTGCGTGTATAGTGTGCATGTGGCTGATCTCC GTCACTTGAAGTCGTTGCTGCGCCTCTGTCTTCTGCGTAGACATGGCTGTATGCCGGATG ACGCCGATGATCCAGGTCTTTCAGGTGAAGACAGAAGGCTATAGCGGGCCCTTGAGTGCG TGCAAGAGCAGCTGCTTCGATGGCTCCTCCTCCCTTCGTCCGGTTGCCCTGTTTTCGCAG AGACAAACATGCAGCAATCGCCATCTAATTCTGGTGAGGGCCCAGGATGCAAAGAAGGGA ACCCGCATTTTCAAGTTCAACAAGAAGCAGGAGGCGGCCACCGATGAGCCCCCAGAGGCG AGGCCTGGCACTAGGCTCTTTCGATTTGGGGGACCAAAGAAACAGGATGATGAGAAGGAA GAGGAGGAGGACACGTCGCCTGTTGGCAAGTTTGGCACCCAGTTATTCAAGAATTTGGGC AGCAGCTTAAAGAAGCAGGGTGCAAGCGGCTCCGCCAAAGGAGGAGTCCTAGTTCCTGCT ACCAAGGACCTGTCCTTTAGTTTACCGAGGCGG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A1R2V3
Definition	sp\|A1R2V3\|CAPP_ARTAT Phosphoenolpyruvate carboxylase OS=Arthrobacter aurescens (strain TC1)
Align length	40
Score (bit)	33.1
E-value	1.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK958408\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_O20, 5' (618 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A1R2V3\|CAPP_ARTAT Phosphoenolpyruvate carboxylase OS=Arthroba... 33 1.2 >sp\|A1R2V3\|CAPP_ARTAT Phosphoenolpyruvate carboxylase OS=Arthrobacter aurescens (strain TC1) GN=ppc PE=3 SV=1 Length = 932 Score = 33.1 bits (74), Expect = 1.2 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -1 Query: 267 RTKGGGAIEAAALARTQGPAIAFCLHLKDLDHRRHPAYSH 148 R G + ALAR + AF LHL LD R H Y H Sbjct: 392 RNHSAGLVADGALARVRRAIAAFGLHLATLDIREHADYHH 431
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A3ZKZ9
Definition	tr\|A3ZKZ9\|A3ZKZ9_9PLAN NADH dehydrogenase subunit L OS=Blastopirellula marina DSM 3645
Align length	57
Score (bit)	35.8
E-value	2.1
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK958408\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_O20, 5' (618 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A3ZKZ9\|A3ZKZ9_9PLAN NADH dehydrogenase subunit L OS=Blastopir... 36 2.1 tr\|B4WD19\|B4WD19_9CAUL Transcriptional regulator, TetR family pr... 35 3.6 >tr\|A3ZKZ9\|A3ZKZ9_9PLAN NADH dehydrogenase subunit L OS=Blastopirellula marina DSM 3645 GN=DSM3645_08542 PE=3 SV=1 Length = 841 Score = 35.8 bits (81), Expect = 2.1 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = -1 Query: 252 GAIEAAALARTQGPAIAFCLHLKDLDHRRHPAYSH-VYAEDRGAATTSSDGDQPHAH 85 GAI AAA+ AI H H HPA SH V ++ T DG+ H H Sbjct: 43 GAIAAAAMCSLTAAAIWMAQHAPPATHHAHPAESHAVISQSSVHLTALHDGEHDHDH 99 >tr\|B4WD19\|B4WD19_9CAUL Transcriptional regulator, TetR family protein OS=Brevundimonas sp. BAL3 GN=BBAL3_3131 PE=4 SV=1 Length = 202 Score = 35.0 bits (79), Expect = 3.6 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -1 Query: 210 AIAFCLHLKDLDHRRHPAYSHVYAEDRGAATTSSDGDQPHAHYTRTRLIRL 58 A+ + LH H+ HPAY HVY RG+++ S H RL+ L Sbjct: 91 AVEWVLHALTDFHQAHPAYQHVYRAVRGSSSPESIALLDHTRVVVDRLLAL 141