DK958415 |
Clone id |
TST39A01NGRL0030_P03 |
Library |
TST39 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_P03. 5' end sequence. |
Accession |
DK958415 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL124Contig1 |
Sequence |
CGAGTCTCCGCTAGGGTTTTCCGCCTGTGCAGCAAAGACCTCGTCGCCATGGCCTTGAGC GAGCTAGGGTGCACATATGCGGCGCTTATCCTGCACGACGATAATATCGCGATCACGGCA GAGAAAATAGCAGCACTACTGAAAGCAGCAAACGTGCAAGTAGAGGCTTACTGGCCTGCG CTCTTTGCTAAGTTATTGGAAAAGCGCAGTGTCGAAGATCTGATCACCAATGTTGGCTCT GGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCTGGAGGTGGAGCT GCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAGGAAGAAAGCGACGACGAT ATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAGCCCAATTTTGTA GGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTTGTAATTGCCTTG CTATTCAGTAAAAAACCATGATCACTTCTCACCGACTAAAAAAAAAAAAAAAAAAAACCC AA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52855 |
Definition |
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays |
Align length |
111 |
Score (bit) |
103.0 |
E-value |
4.0e-22 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTU1 |
Definition |
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
111 |
Score (bit) |
112.0 |
E-value |
1.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958415|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_P03, 5' (517 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 112 1e-23 tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 111 2e-23 tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 110 4e-23 tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 110 5e-23 tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 108 1e-22 tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 108 1e-22 tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 107 4e-22 tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 107 4e-22 tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 106 6e-22 tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 106 8e-22 tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 106 8e-22 tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 106 8e-22 tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 106 8e-22 tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 106 8e-22 tr|A9PE33|A9PE33_POPTR Putative uncharacterized protein OS=Popul... 104 2e-21 tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 104 3e-21 tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 103 4e-21 tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 103 5e-21 tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 103 5e-21 tr|B6TBN5|B6TBN5_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 102 9e-21 tr|A9PA46|A9PA46_POPTR Putative uncharacterized protein OS=Popul... 102 9e-21 tr|A9P9N6|A9P9N6_POPTR Putative uncharacterized protein OS=Popul... 102 9e-21 tr|A9PBP0|A9PBP0_POPTR Putative uncharacterized protein OS=Popul... 102 1e-20 tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 102 1e-20 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 101 3e-20 tr|A9P1V9|A9P1V9_PICSI Putative uncharacterized protein OS=Picea... 101 3e-20 tr|A9NNL8|A9NNL8_PICSI Putative uncharacterized protein OS=Picea... 101 3e-20 tr|Q69UI8|Q69UI8_ORYSJ Os08g0116500 protein OS=Oryza sativa subs... 100 3e-20 tr|A2YQN3|A2YQN3_ORYSI Putative uncharacterized protein OS=Oryza... 100 3e-20 tr|A9P8X4|A9P8X4_POPTR Putative uncharacterized protein OS=Popul... 97 4e-19
>tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160947 PE=4 SV=1 Length = 109
Score = 112 bits (279), Expect = 1e-23 Identities = 63/111 (56%), Positives = 69/111 (62%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SEL CTYA+LILHDD IAITA+KIAAL+KAANVQVE YWP LFAKL EKRSV+DLIT Sbjct: 1 MSVSELACTYASLILHDDGIAITADKIAALVKAANVQVEGYWPGLFAKLCEKRSVDDLIT 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVG SDDDMGFSLFD Sbjct: 61 NVGG--GGGGAVAVSAAPAASAAAEAAPKEEEKKEEPKEESDDDMGFSLFD 109
>tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_164358 PE=4 SV=1 Length = 109
Score = 111 bits (278), Expect = 2e-23 Identities = 63/111 (56%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SEL CTYA LILHDD IAITA+KIAAL+KAANVQVE YWP LFAKL EKRSV+DLIT Sbjct: 1 MSVSELACTYACLILHDDGIAITADKIAALVKAANVQVEGYWPGLFAKLCEKRSVDDLIT 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVG SDDDMGFSLFD Sbjct: 61 NVGG--GGGGAVAVSAAPAASAAAEAAPKEEEKKEEPKEESDDDMGFSLFD 109
>tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 113
Score = 110 bits (275), Expect = 4e-23 Identities = 59/113 (52%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SE+ CTYAAL+LHDDNI ITAEKI+ L+KAANVQ+E+YWP LFAKL+EKR++EDLI+ Sbjct: 1 MSVSEVACTYAALVLHDDNIPITAEKISTLVKAANVQIESYWPGLFAKLMEKRNIEDLIS 60
Query: 229 NVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVGS SDDDMGFSLFD Sbjct: 61 NVGSGGGGASAAVAVAPSGGAGAPAAAAAPAAEEKKEEPKEESDDDMGFSLFD 113
>tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_124329 PE=4 SV=1 Length = 107
Score = 110 bits (274), Expect = 5e-23 Identities = 61/111 (54%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SEL CTYA LILHDD IAITA+KIAAL+KAANV VE YWP+LFAKL EKRSV+DL+T Sbjct: 1 MSISELACTYACLILHDDGIAITADKIAALVKAANVSVEGYWPSLFAKLCEKRSVDDLVT 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVG SDDDMGFSLFD Sbjct: 61 NVGG----GGGAVAVSAAPAASAAVEAPKEEEKKEEPKEESDDDMGFSLFD 107
>tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_139008 PE=4 SV=1 Length = 110
Score = 108 bits (271), Expect = 1e-22 Identities = 61/111 (54%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SEL CTYA LILHDD IAITA+KIA+L+KAANV VE YWP+LFAKL EKRSV+DLIT Sbjct: 1 MSVSELACTYACLILHDDGIAITADKIASLVKAANVSVEGYWPSLFAKLCEKRSVDDLIT 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVG SDDDMGFSLFD Sbjct: 61 NVGG-GKCGGAAVAVSAAPASSAADEAPQVEEKKEEPKEESDDDMGFSLFD 110
>tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235143 PE=4 SV=1 Length = 110
Score = 108 bits (271), Expect = 1e-22 Identities = 61/111 (54%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++SE+ CTYA LILHDD IAITA+KIAAL+KAANV VE YWP+LFAKL EKRSVEDLIT Sbjct: 1 MSISEVACTYACLILHDDGIAITADKIAALVKAANVSVEGYWPSLFAKLCEKRSVEDLIT 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVG SD+DMGFSLFD Sbjct: 61 NVGG-GGGGAVAMSAAPAAGGAAAAVEAPKEVEKEEPKEESDEDMGFSLFD 110
>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 107 bits (267), Expect = 4e-22 Identities = 62/111 (55%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 MA EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKRSVEDLI Sbjct: 1 MASGELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRSVEDLIL 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 +VGS SDDDMGFSLFD Sbjct: 61 SVGS--GGGAAPVAAAAPAGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 109
>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 107 bits (267), Expect = 4e-22 Identities = 62/111 (55%), Positives = 68/111 (61%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 MA EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKRSVEDLI Sbjct: 1 MASGELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRSVEDLIL 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 +VGS SDDDMGFSLFD Sbjct: 61 SVGS--GGGAAPVAASAPAGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 109
>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001 PE=4 SV=1 Length = 111
Score = 106 bits (265), Expect = 6e-22 Identities = 56/111 (50%), Positives = 66/111 (59%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 M++ E+ CTYA LILHDD I++T EKI L+KAA V+VE+YWPALFAKL+EKR+VEDLI Sbjct: 1 MSIGEIACTYATLILHDDGISVTPEKINTLVKAAKVEVESYWPALFAKLVEKRNVEDLIA 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 NVGS SDDDMGFSLFD Sbjct: 61 NVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESDDDMGFSLFD 111
>tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 106 bits (264), Expect = 8e-22 Identities = 62/111 (55%), Positives = 69/111 (62%) Frame = +1
Query: 49 MALSELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLIT 228 MA EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKR+VEDLI Sbjct: 1 MASGELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60
Query: 229 NVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 381 +VGS SDDDMGFSLFD Sbjct: 61 SVGS--GGGAAPVAAAAPAVXAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
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