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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958456
Clone id TST39A01NGRL0002_A20
Library
Length 622
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_A20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AACTGCTTGAAATTCAGTTATGGCCTCCACCACCCTCTCCTCCTCCCTCTGCGGCCAGGC
TGTCCTGAAGCAGCAGGTCAGCGAGCTGTCGCGCAAGGTGGGCGCCTATGAGGCCCGCGT
GCAGATGAAGACCACAAGGGCTCCAGCAGCAGCATCTGGTATGGACCGGACCGCCCCCTC
TACCTGGGCCCCCTCTCCGGTTCTCCCCCTTCCTACCTCACTGGGGAATTCCCCGGGGAC
TACGGCTGGGACACGGCCGGCCTGTCCGCCGACCCTGAGACCTTCGCCAAGAACCGGGAG
CTGGAGGTCATCCACGCGCGTTGGGCGATGCTTGGCGCCCTGGGCTGCGTCACCCCGGAG
CTGCTGGCCAAAAACGGCGTCCCGTTCGGCGAAGCCGTCTGGTTCAAGGCCGGCTCGCAG
ATCTTCAGTGACGGCGGGCTGGACTACCTGGGCAACCCCGGCCTGATACACGCTCAGAGC
ATCCTCGCCATCTGGGCCTGCCAGGTCATCCTCATGGGCGCTGTGTAGGGCTACCGAGTG
GCCGGCGGCCCGTTGGGCGACGTGTCGGACCCCGTCTACCCGGGCGGCCAGTTCGACCCC
TTGTGCCTGGCCGACGACCCTG
■■Homology search results ■■ -
sp_hit_id P20866
Definition sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens
Align length 159
Score (bit) 264.0
E-value 2.0e-73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958456|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_A20, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast...   264   2e-73
sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...   274   2e-73
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl...   272   1e-72
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty...   272   1e-72
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas...   271   2e-72
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...   271   2e-72
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop...   271   3e-72
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...   270   3e-72
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas...   270   4e-72
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...   270   6e-72
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...   270   6e-72
sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chlorop...   270   6e-72
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...   270   6e-72
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop...   269   8e-72
sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloropl...   269   8e-72
sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloropl...   269   1e-71
sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro...   268   2e-71
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...   268   2e-71
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop...   268   2e-71
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb...   268   2e-71
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...   266   5e-71
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...   266   5e-71
sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloro...   266   8e-71
sp|P12471|CB21_SOYBN Chlorophyll a-b binding protein, chloroplas...   266   8e-71
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas...   265   1e-70
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...   265   1e-70
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl...   264   2e-70
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl...   264   3e-70
sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas...   263   4e-70
sp|P04780|CB22_PETSP Chlorophyll a-b binding protein 22L, chloro...   263   4e-70

>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic
           OS=Physcomitrella patens PE=3 SV=1
          Length = 269

 Score =  264 bits (674), Expect(2) = 2e-73
 Identities = 123/159 (77%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S +IWYG DR                GEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 48  SDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 107

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 108 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 167

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           V+LMGAV GYRVAGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 168 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDP 206



 Score = 33.1 bits (74), Expect(2) = 2e-73
 Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKV-GAYEARVQMKTTRAPAAAS 157
           A+   S++L GQ+++K  V+ELSRKV G  EARV M+ T + +A S
Sbjct: 4   ATAMHSTALAGQSLVK-PVNELSRKVLGNVEARVTMRRTVSKSAGS 48



 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 229 FPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLAKNG 378
           +PG   +D  GL+ DP+TFA+ +  E+ + R AM    G     ++   G
Sbjct: 192 YPGG-SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240


>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score =  274 bits (701), Expect = 2e-73
 Identities = 130/162 (80%), Positives = 137/162 (84%)
 Frame = +1

Query: 136 KGSSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 315
           K  S SIWYG DR               +GEFPGDYGWDTAGLSADPETFAKNRELEVIH
Sbjct: 42  KAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101

Query: 316 ARWAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIW 495
           +RWAMLGALGCVTPELLAKNGV FGEAVWFKAGSQIF++GGLDYLGNP L+HAQSILAIW
Sbjct: 102 SRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIW 161

Query: 496 ACQVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           ACQVILMGAV GYRVAGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 162 ACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDP 203



 Score = 37.0 bits (84), Expect = 0.082
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 20  MASTT--LSSSLCGQAVLKQQVSELSRKVGAYEARVQMKT--TRAPAAASGMDRTAPSTW 187
           MA++T  L+S+  GQ +  + V+ELSRKVGA EARVQM    ++AP+ +       P   
Sbjct: 1   MATSTAALTSTFSGQQL--KPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL 58

Query: 188 APSPVLPLPTSLGNSPG 238
            P    P     G  PG
Sbjct: 59  GPFSGSPPSYLSGEFPG 75


>sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1
          Length = 267

 Score =  272 bits (695), Expect = 1e-72
 Identities = 128/160 (80%), Positives = 136/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 105

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWAC
Sbjct: 106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGA+ GYRVAGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 166 QVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDP 205


>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type
           I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1
          Length = 255

 Score =  272 bits (695), Expect = 1e-72
 Identities = 127/160 (79%), Positives = 137/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH+R
Sbjct: 34  SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 93

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELL++NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWAC
Sbjct: 94  WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 153

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGAV GYR+AGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 154 QVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 193


>sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplastic
           OS=Spinacia oleracea PE=1 SV=1
          Length = 267

 Score =  271 bits (693), Expect = 2e-72
 Identities = 129/159 (81%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           SSS WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RW
Sbjct: 47  SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 106

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 107 AMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           VILMGAV GYR+AGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 205


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
           chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
          Length = 265

 Score =  271 bits (693), Expect = 2e-72
 Identities = 129/160 (80%), Positives = 136/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH+R
Sbjct: 44  SSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP LIHAQSILAIWAC
Sbjct: 104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGA+ GYRVAGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 164 QVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDP 203


>sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C,
           chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1
          Length = 267

 Score =  271 bits (692), Expect = 3e-72
 Identities = 128/160 (80%), Positives = 135/160 (84%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 105

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWAC
Sbjct: 106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGAV GYR+AGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 205


>sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21,
           chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1
          Length = 265

 Score =  270 bits (691), Expect = 3e-72
 Identities = 129/160 (80%), Positives = 136/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           +SSS WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 44  ASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 103

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWAC
Sbjct: 104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QVILMGAV GYRVAGGPLG+V DP+YPGG FDPL LA+DP
Sbjct: 164 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDP 203


>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic
           OS=Zea mays PE=2 SV=1
          Length = 265

 Score =  270 bits (690), Expect = 4e-72
 Identities = 128/160 (80%), Positives = 135/160 (84%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           +S S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 44  ASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 103

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP LIHAQSILAIWAC
Sbjct: 104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGAV GYR+AGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 203


>sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50,
           chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1
          Length = 267

 Score =  270 bits (689), Expect = 6e-72
 Identities = 128/160 (80%), Positives = 135/160 (84%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 105

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFS+GGLDYLGNP L+HAQSILAIWAC
Sbjct: 106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QV+LMGAV GYRVAGGPLG+V DP+YPGG FDPL LA+DP
Sbjct: 166 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDP 205
tr_hit_id A9RAS2
Definition tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 159
Score (bit) 267.0
E-value 3.0e-75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958456|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_A20, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella paten...   267   3e-75
tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein OS=Physco...   267   5e-75
tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella paten...   267   5e-75
tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella paten...   265   4e-74
tr|A9RT62|A9RT62_PHYPA Predicted protein OS=Physcomitrella paten...   265   5e-74
tr|Q765P6|Q765P6_PHYPA Light-harvesting chlorophyll a/b-binding ...   267   6e-74
tr|A9RBQ5|A9RBQ5_PHYPA Predicted protein OS=Physcomitrella paten...   261   3e-72
tr|A9NL12|A9NL12_PICSI Putative uncharacterized protein OS=Picea...   258   3e-72
tr|Q39768|Q39768_GINBI Light-harvesting chlorophyll a/b binding ...   274   4e-72
tr|O64444|O64444_NICSY Light harvesting chlorophyll a/b-binding ...   274   4e-72
tr|Q4VV55|Q4VV55_9CONI Chloroplast light harvesting chlorophyll ...   273   6e-72
tr|Q4VV54|Q4VV54_PINLA Chloroplast light harvesting chlorophyll ...   273   6e-72
tr|Q4VV53|Q4VV53_PINMO Chloroplast light harvesting chlorophyll ...   273   6e-72
tr|Q4VV52|Q4VV52_PINST Chloroplast light harvesting chlorophyll ...   273   6e-72
tr|B0L806|B0L806_9POAL Chloroplast chlorophyll a/b binding prote...   272   1e-71
tr|Q5ZF93|Q5ZF93_PLAMJ Light harvesting protein 1 (Fragment) OS=...   272   1e-71
tr|O64449|O64449_NICSY Light harvesting chlorophyll a/b-binding ...   272   1e-71
tr|O64447|O64447_NICSY Light harvesting chlorophyll a/b-binding ...   272   1e-71
tr|A9SGM1|A9SGM1_PHYPA Predicted protein OS=Physcomitrella paten...   263   2e-71
tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus ...   271   2e-71
tr|Q40788|Q40788_PINCO Chlorophyll a/b binding protein OS=Pinus ...   271   2e-71
tr|Q1EPK5|Q1EPK5_MUSAC Chlorophyll A-B binding protein (CAB), pu...   271   2e-71
tr|B4FUA1|B4FUA1_MAIZE Chlorophyll a-b binding protein 1 OS=Zea ...   271   2e-71
tr|Q84U94|Q84U94_CITLI Chlorophyll a/b-binding protein (Fragment...   271   2e-71
tr|Q4VV62|Q4VV62_PINEC Chloroplast light harvesting chlorophyll ...   271   2e-71
tr|Q4VV60|Q4VV60_PINRA Chloroplast light harvesting chlorophyll ...   271   2e-71
tr|Q4VV58|Q4VV58_9CONI Chloroplast light harvesting chlorophyll ...   271   2e-71
tr|Q4VV57|Q4VV57_PINRO Chloroplast light harvesting chlorophyll ...   271   2e-71
tr|Q4VV56|Q4VV56_9CONI Chloroplast light harvesting chlorophyll ...   271   2e-71
tr|Q4VV47|Q4VV47_PICSI Chloroplast light harvesting chlorophyll ...   271   2e-71

>tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155384 PE=4 SV=1
          Length = 267

 Score =  267 bits (682), Expect(2) = 3e-75
 Identities = 125/159 (78%), Positives = 136/159 (85%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR               TGEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 47  SDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 106

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 107 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           V+LMGAV GYRVAGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDP 205



 Score = 39.7 bits (91), Expect(2) = 3e-75
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           A+   S++L GQ VLK  V+ELSRKVG  EARV M+ T + +A S
Sbjct: 4   ATAMHSTALAGQGVLKP-VNELSRKVGNVEARVTMRRTVSKSAGS 47


>tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein
           OS=Physcomitrella patens PE=2 SV=1
          Length = 268

 Score =  267 bits (682), Expect(2) = 5e-75
 Identities = 126/159 (79%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR                GEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 48  SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 107

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 108 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 167

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           VILMGAV GYRVAGGPLGDV+DP+YPGG FDPL LADDP
Sbjct: 168 VILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDP 206



 Score = 38.9 bits (89), Expect(2) = 5e-75
 Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +2

Query: 23  ASTTLSSS-LCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           A+T ++S+ L GQA+LK  VSELSRKV A EARV M+ T + ++ S
Sbjct: 4   AATAMNSTVLAGQALLKP-VSELSRKVNAGEARVTMRKTVSKSSGS 48


>tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219547 PE=4 SV=1
          Length = 268

 Score =  267 bits (682), Expect(2) = 5e-75
 Identities = 126/159 (79%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR                GEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 48  SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 107

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 108 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 167

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           VILMGAV GYRVAGGPLGDV+DP+YPGG FDPL LADDP
Sbjct: 168 VILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDP 206



 Score = 38.9 bits (89), Expect(2) = 5e-75
 Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +2

Query: 23  ASTTLSSS-LCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           A+T ++S+ L GQA+LK  VSELSRKV A EARV M+ T + ++ S
Sbjct: 4   AATAMNSTVLAGQALLKP-VSELSRKVNAGEARVTMRKTVSKSSGS 48


>tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_124625 PE=4 SV=1
          Length = 267

 Score =  265 bits (677), Expect(2) = 4e-74
 Identities = 124/159 (77%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR                GEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 47  SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 106

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 107 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           V+LMGAV GYRVAGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDP 205



 Score = 37.7 bits (86), Expect(2) = 4e-74
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           A+   S++L GQ+++K  V+ELSRKVG  EARV M+ T + +A S
Sbjct: 4   ATAMHSTALAGQSLVKP-VNELSRKVGNVEARVTMRRTVSKSAGS 47


>tr|A9RT62|A9RT62_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_105126 PE=4 SV=1
          Length = 265

 Score =  265 bits (677), Expect(2) = 5e-74
 Identities = 124/162 (76%), Positives = 137/162 (84%)
 Frame = +1

Query: 136 KGSSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 315
           K +S SIWYG DR               TGEF GDYGWDTAGLS+DPETFA+NRELEVIH
Sbjct: 42  KSTSDSIWYGADRPKYLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIH 101

Query: 316 ARWAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIW 495
           ARWAMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIW
Sbjct: 102 ARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 161

Query: 496 ACQVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           A QV+LMGAV GYRVAGGPLG+++DP+YPGG FDPL LADDP
Sbjct: 162 ASQVVLMGAVEGYRVAGGPLGEITDPIYPGGSFDPLGLADDP 203



 Score = 37.4 bits (85), Expect(2) = 5e-74
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKVGAYEARVQMKTT 136
           A+   S++L GQ++LK  V+ELSRKVG+ EARV M+ T
Sbjct: 4   ATAMHSTTLAGQSLLKP-VNELSRKVGSSEARVTMRRT 40


>tr|Q765P6|Q765P6_PHYPA Light-harvesting chlorophyll a/b-binding
           protein 1 (Predicted protein) OS=Physcomitrella patens
           subsp. patens GN=PpLhcb1 PE=4 SV=1
          Length = 267

 Score =  267 bits (682), Expect(2) = 6e-74
 Identities = 126/159 (79%), Positives = 135/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR                GEF GDYGWDTAGLS+DPETFA+NRELEVIHARW
Sbjct: 47  SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 106

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 107 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           VILMGAV GYRVAGGPLGDV+DP+YPGG FDPL LADDP
Sbjct: 167 VILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDP 205



 Score = 35.0 bits (79), Expect(2) = 6e-74
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           A+   S++L GQA+L Q  +EL RKVG  +ARV M+ T + ++ S
Sbjct: 4   ATACASTALAGQALL-QPANELVRKVGTSQARVTMRKTVSKSSGS 47


>tr|A9RBQ5|A9RBQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110989 PE=4 SV=1
          Length = 267

 Score =  261 bits (667), Expect(2) = 3e-72
 Identities = 123/159 (77%), Positives = 134/159 (84%)
 Frame = +1

Query: 145 SSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARW 324
           S SIWYG DR                GEF GDYGWDTAGLS+D ETFA+NRELEVIHARW
Sbjct: 47  SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARW 106

Query: 325 AMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQ 504
           AMLGALGC+TPELLAK+GV FGEAVWFKAG+QIFS+GGLDYLGNP L+HAQSILAIWACQ
Sbjct: 107 AMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166

Query: 505 VILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           V+LMGAV GYRVAGGPLG+V+DP+YPGG FDPL LADDP
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDP 205



 Score = 35.4 bits (80), Expect(2) = 3e-72
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +2

Query: 38  SSSLCGQAVLKQQVSELSRKVGAYEARVQMKTTRAPAAAS 157
           S+ L GQ++LK  V+ELSR+VG  +ARV M+ T + +A S
Sbjct: 9   STGLAGQSLLKP-VNELSRRVGNVDARVTMRRTVSKSARS 47


>tr|A9NL12|A9NL12_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 266

 Score =  258 bits (660), Expect(2) = 3e-72
 Identities = 123/157 (78%), Positives = 130/157 (82%)
 Frame = +1

Query: 151 SIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAM 330
           SIWYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 331 LGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWACQVI 510
           LGALGCV PELLAK GV FGEAVWFKAG+QIFS+GGLDYLGNP LIHAQSILAIWA QV+
Sbjct: 108 LGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 167

Query: 511 LMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           LMG + GYRV GGPLG+  DP+YPGG FDPL LADDP
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDP 204



 Score = 38.1 bits (87), Expect(2) = 3e-72
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +2

Query: 23  ASTTLSSSLCGQAVLKQQVSELSRKVGAYEARVQMKTT 136
           AS   SSSL GQ +L+   +EL +KVGA +AR+ M+ T
Sbjct: 4   ASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRT 41


>tr|Q39768|Q39768_GINBI Light-harvesting chlorophyll a/b binding
           protein of photosystem II OS=Ginkgo biloba PE=2 SV=1
          Length = 270

 Score =  274 bits (700), Expect = 4e-72
 Identities = 129/160 (80%), Positives = 137/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           SS S WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH+R
Sbjct: 49  SSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 108

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELL++NGV FGEAVWFKAGSQIFSDGGLDYLGNP LIHAQSILAIWAC
Sbjct: 109 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWAC 168

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QVILMGAV GYR+AGGPLG+++DP+YPGG FDPL LADDP
Sbjct: 169 QVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDP 208


>tr|O64444|O64444_NICSY Light harvesting chlorophyll a/b-binding
           protein OS=Nicotiana sylvestris GN=Lhcb1*3 PE=3 SV=1
          Length = 265

 Score =  274 bits (700), Expect = 4e-72
 Identities = 132/160 (82%), Positives = 136/160 (85%)
 Frame = +1

Query: 142 SSSSIWYGPDRXXXXXXXXXXXXXXXTGEFPGDYGWDTAGLSADPETFAKNRELEVIHAR 321
           +SSS WYGPDR               TGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 44  ASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 103

Query: 322 WAMLGALGCVTPELLAKNGVPFGEAVWFKAGSQIFSDGGLDYLGNPGLIHAQSILAIWAC 501
           WAMLGALGCV PELLA+NGV FGEAVWFKAGSQIFSDGGLDYLGNP LIHAQSILAIWAC
Sbjct: 104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWAC 163

Query: 502 QVILMGAV*GYRVAGGPLGDVSDPVYPGGQFDPLCLADDP 621
           QVILMGAV GYRVAGGPLG+V DP+YPGG FDPL LADDP
Sbjct: 164 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDP 203