NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958462
Clone id TST39A01NGRL0002_B03
Library
Length 293
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_B03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGATGAGTATGTGCAGAAGATGACTTTCGATAGTTATCTCTACAAGACTGTTGTGCCTGG
AAACCCGCTGGATGATCTCAAACTTGCTTTTAACACCATTGGTAGCCTTGTTAGAGCAAA
TGCCCTTAGGAAAGAGATGAGGAAAGTCTCATTGTAAGCTGCATCGGCCTACACCTGATG
TATGTACAGGTGGTTTTGTATCTATGAATTTATAGTATGCAGTCAGTGCTGTGTTGCCTG
CACACAATGTTAGTATATGAAGGTCCAGAGGAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q55087
Definition sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis sp. (strain PCC 6803)
Align length 39
Score (bit) 60.1
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_B03, 5'
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis...    60   3e-09
sp|P26172|BCHP_RHOCA Geranylgeranyl hydrogenase OS=Rhodobacter c...    33   0.34 
sp|O87875|BCRB_THAAR Benzoyl-CoA reductase subunit B OS=Thauera ...    30   4.9  
sp|Q8KA30|PMBA_BUCAP Protein pmbA homolog OS=Buchnera aphidicola...    29   6.4  

>sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis
           sp. (strain PCC 6803) GN=chlP PE=3 SV=1
          Length = 407

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = +2

Query: 11  VQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANAL 127
           VQK+TFDSYLYKTVVP NPL  +K+   TIGSL+R NAL
Sbjct: 367 VQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405


>sp|P26172|BCHP_RHOCA Geranylgeranyl hydrogenase OS=Rhodobacter
           capsulatus GN=bchP PE=3 SV=1
          Length = 391

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSL 109
           D  VQ+MTF+SY+ K +    PL +LK+ F  +  L
Sbjct: 347 DVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382


>sp|O87875|BCRB_THAAR Benzoyl-CoA reductase subunit B OS=Thauera
           aromatica GN=bcrB PE=1 SV=1
          Length = 432

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 47  TVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVS 151
           T VPGN L++L + F+ + +L   NA++  MRK S
Sbjct: 42  TFVPGN-LNELIMCFDMVNNLPETNAIQNGMRKQS 75


>sp|Q8KA30|PMBA_BUCAP Protein pmbA homolog OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=pmbA PE=3 SV=1
          Length = 447

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 133 FPKGICSNK--ATNGVKSKFEIIQRVSRHNS 47
           F KG+ S+K  +TNG+K   EI   +S+H S
Sbjct: 71  FSKGVSSSKDFSTNGIKKMLEIAIDISKHTS 101
tr_hit_id B7X936
Definition tr|B7X936|B7X936_HEVBR Geranylgeranyl reductase OS=Hevea brasiliensis
Align length 51
Score (bit) 97.1
E-value 4.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_B03, 5'
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7X936|B7X936_HEVBR Geranylgeranyl reductase OS=Hevea brasili...    97   4e-19
tr|Q9XE94|Q9XE94_SOYBN Geranylgeranyl hydrogenase OS=Glycine max...    92   1e-17
tr|B8LQ19|B8LQ19_PICSI Putative uncharacterized protein OS=Picea...    92   1e-17
tr|Q8GZB1|Q8GZB1_9LILI Geranyl-geranyl reductase (Fragment) OS=X...    92   2e-17
tr|A7PDL6|A7PDL6_VITVI Chromosome chr17 scaffold_12, whole genom...    91   3e-17
tr|A5B6E9|A5B6E9_VITVI Putative uncharacterized protein OS=Vitis...    91   3e-17
tr|A9PH25|A9PH25_POPTR Putative uncharacterized protein OS=Popul...    91   4e-17
tr|B8A065|B8A065_MAIZE Putative uncharacterized protein OS=Zea m...    90   5e-17
tr|B6TDR5|B6TDR5_MAIZE Geranylgeranyl hydrogenase OS=Zea mays PE...    90   5e-17
tr|Q56GA3|Q56GA3_MEDTR Geranylgeranyl reductase OS=Medicago trun...    90   6e-17
tr|A9U1T8|A9U1T8_PHYPA Predicted protein OS=Physcomitrella paten...    90   6e-17
tr|A9RPK3|A9RPK3_PHYPA Predicted protein OS=Physcomitrella paten...    89   8e-17
tr|Q6Z2T6|Q6Z2T6_ORYSJ Os02g0744900 protein OS=Oryza sativa subs...    89   1e-16
tr|Q4U3Z4|Q4U3Z4_LOTJA Geranylgeranyl hydrogenase OS=Lotus japon...    89   1e-16
tr|Q1ZYL0|Q1ZYL0_OLEEU Geranylgeranyl reductase OS=Olea europaea...    89   1e-16
tr|A9SP49|A9SP49_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|A2X9K1|A2X9K1_ORYSI Putative uncharacterized protein OS=Oryza...    89   1e-16
tr|Q9ZS34|Q9ZS34_TOBAC Geranylgeranyl reductase OS=Nicotiana tab...    89   1e-16
tr|Q6XJV3|Q6XJV3_PRUPE Geranylgeranyl reductase OS=Prunus persic...    88   2e-16
tr|O81335|O81335_MESCR Geranylgeranyl hydrogenase OS=Mesembryant...    87   4e-16
tr|Q9CA67|Q9CA67_ARATH Geranylgeranyl reductase; 47568-49165 (Ge...    86   9e-16
tr|Q8H170|Q8H170_ARATH Putative geranylgeranyl reductase OS=Arab...    86   9e-16
tr|Q56YY5|Q56YY5_ARATH Geranylgeranyl reductase (Fragment) OS=Ar...    86   9e-16
tr|O49594|O49594_ARATH Geranylgeranyl reductase (Fragment) OS=Ar...    86   9e-16
tr|Q09JZ1|Q09JZ1_BRARP Geranylgeranyl reductase OS=Brassica rapa...    82   1e-14
tr|Q45FE7|Q45FE7_WHEAT Geranylgeranyl hydrogenase OS=Triticum ae...    82   2e-14
tr|O65188|O65188_ZANAE Geranylgeranyl reductase (Fragment) OS=Za...    79   9e-14
tr|B6DX94|B6DX94_MANSQ Putative plastid geranylgeranyl reductase...    79   1e-13
tr|Q01EB5|Q01EB5_OSTTA Ggh geranylgeranyl reductase (IC) OS=Ostr...    79   1e-13
tr|A4RT21|A4RT21_OSTLU Geranylgeranyl reductase OS=Ostreococcus ...    77   3e-13

>tr|B7X936|B7X936_HEVBR Geranylgeranyl reductase OS=Hevea
           brasiliensis GN=ggdr PE=2 SV=1
          Length = 471

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 47/51 (92%), Positives = 49/51 (96%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           DEYVQKMTFDSYLYK VVPGNPLDDLKLAFNTIGSLVRANALRKEM K+S+
Sbjct: 421 DEYVQKMTFDSYLYKKVVPGNPLDDLKLAFNTIGSLVRANALRKEMNKLSV 471


>tr|Q9XE94|Q9XE94_SOYBN Geranylgeranyl hydrogenase OS=Glycine max
           GN=Ggh PE=4 SV=2
          Length = 462

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 43/51 (84%), Positives = 49/51 (96%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           DEYVQKMTFDSYLYKTVVPGNPL+DLKLA NTIGSLVRANA+R+EM K+++
Sbjct: 412 DEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRANAIRREMNKLNV 462


>tr|B8LQ19|B8LQ19_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 514

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           D+YVQKMTFDSYLYKTVVPGNPLDDLKLA  TIGSLVRA+ALRKEM+K+S+
Sbjct: 464 DDYVQKMTFDSYLYKTVVPGNPLDDLKLAIKTIGSLVRASALRKEMKKLSV 514


>tr|Q8GZB1|Q8GZB1_9LILI Geranyl-geranyl reductase (Fragment)
           OS=Xerophyta humilis PE=2 SV=1
          Length = 202

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 42/51 (82%), Positives = 49/51 (96%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           D+YVQKMTFDSYLYK VVPGNP+DDLKLA NTIGSL+RANALR+EM+K++L
Sbjct: 152 DKYVQKMTFDSYLYKKVVPGNPIDDLKLAVNTIGSLIRANALRREMQKITL 202


>tr|A7PDL6|A7PDL6_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016328001
           PE=4 SV=1
          Length = 467

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/51 (86%), Positives = 48/51 (94%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           DEYVQKMTFDSYLYK VVPGNPL+DLKLA NTIGSLVRANALR+EM K+S+
Sbjct: 417 DEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKMSV 467


>tr|A5B6E9|A5B6E9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009187 PE=4 SV=1
          Length = 447

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/51 (86%), Positives = 48/51 (94%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           DEYVQKMTFDSYLYK VVPGNPL+DLKLA NTIGSLVRANALR+EM K+S+
Sbjct: 397 DEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKMSV 447


>tr|A9PH25|A9PH25_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 470

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVS 151
           DEYVQKMTFDSYLYK VVPGNPL+DLKLA NTIGSLVRANALR+EM K+S
Sbjct: 420 DEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLS 469


>tr|B8A065|B8A065_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 381

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 43/51 (84%), Positives = 47/51 (92%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           D+YVQKMTFDSYLYK VVPGNPLDD+KLA NTIGSLVRA ALR+EM KV+L
Sbjct: 331 DDYVQKMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 381


>tr|B6TDR5|B6TDR5_MAIZE Geranylgeranyl hydrogenase OS=Zea mays PE=2
           SV=1
          Length = 457

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 43/51 (84%), Positives = 47/51 (92%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           D+YVQKMTFDSYLYK VVPGNPLDD+KLA NTIGSLVRA ALR+EM KV+L
Sbjct: 407 DDYVQKMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 457


>tr|Q56GA3|Q56GA3_MEDTR Geranylgeranyl reductase OS=Medicago
           truncatula PE=2 SV=1
          Length = 462

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 42/51 (82%), Positives = 49/51 (96%)
 Frame = +2

Query: 2   DEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTIGSLVRANALRKEMRKVSL 154
           DEYVQKMTFDSYLYKTVVPG+PL+D+KLA NTIGSLVRANALR+EM K+++
Sbjct: 412 DEYVQKMTFDSYLYKTVVPGSPLEDIKLAINTIGSLVRANALRREMDKLNV 462