DK958517
Clone id TST39A01NGRL0002_D12
Library
Length 638
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_D12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AGATTATGATGTTGGGTCAACAATAAGGGACAAGATTATACCACATGCCGTCTCTTGGTT
CACTGGAGAGGCTTTACAAGGAGAAGAGTTTGAGGATGTTGATGAAGATGATGAAAGTGG
TGACATGGAGGACGAAGATGAGGATGAAGATGAAGACGATGAGGATGATGAAGATGAAGC
AGAGGATGAGGATGAAGCAAAACCCAGAAAGCAGTCTGCACCCTTATCAAAGGTTGGGCC
GAAGCCTGCTTCAGGGGAGCAACCCCCAGAATGCAAGCAGCAATAGAGTTGTATGTTTGT
ATAATTTGCTGTGCTTTTCTCGTCTCTTGGGCTTTGAGGTTGAGTAAGTTTCTCTTCATG
TGTGTTGACGGTTTCTATGATGAGGTCTGAGGACAGGCGATTATTTTTCATGCACATAAA
GCAATTGTACACAAGGGGTGCTCTATTGTTTAGCCAGTCAGTTTGGCTTTGACAGAAGGT
TGCGGTAGCGATTTTGAGGAGAGCTTGGCCTTTTTAGGGGCTGCCAAGTTCTTCAAGATG
TAGAGCAAACAGTTTTGTAGGTGTCGTTCATATCATATATATTATGTCAAGGTGTAGTCT
ATTACTTCAAGAGCACATTGGCATGTAACTCATCCAGA
■■Homology search results ■■ -
sp_hit_id P25293
Definition sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces cerevisiae
Align length 26
Score (bit) 40.8
E-value 0.006
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958517|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D12, 5'
(638 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyce... 41 0.006
sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.0... 40 0.010
sp|Q7ZY81|NPL1B_XENLA Nucleosome assembly protein 1-like 1-B OS=... 35 0.43
sp|Q4U0Y4|NPL1A_XENLA Nucleosome assembly protein 1-like 1-A OS=... 35 0.43
sp|Q5U2Z3|NP1L4_RAT Nucleosome assembly protein 1-like 4 OS=Ratt... 35 0.43
sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mu... 35 0.43
sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Ho... 35 0.43
sp|Q2TA40|NP1L4_BOVIN Nucleosome assembly protein 1-like 4 OS=Bo... 35 0.43
sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xe... 35 0.43
sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Ratt... 35 0.43
sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Po... 35 0.43
sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mu... 35 0.43
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Ho... 35 0.43
sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bo... 35 0.43
sp|Q6CJI0|SLT11_KLULA Pre-mRNA-splicing factor SLT11 OS=Kluyvero... 33 1.6

>sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces
cerevisiae GN=NAP1 PE=1 SV=2
Length = 417

Score = 40.8 bits (94), Expect = 0.006
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
DY +G ++DK+IP AV WFTG AL+
Sbjct: 341 DYSIGEQLKDKLIPRAVDWFTGAALE 366


>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06
OS=Schizosaccharomyces pombe GN=SPCC364.06 PE=1 SV=1
Length = 393

Score = 40.0 bits (92), Expect = 0.010
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEAL 76
DY +G ++K+IP AV WFTGEAL
Sbjct: 315 DYQIGEDFKEKLIPRAVEWFTGEAL 339


>sp|Q7ZY81|NPL1B_XENLA Nucleosome assembly protein 1-like 1-B
OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1
Length = 393

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 22/26 (84%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G +R++IIP +V +FTGEA++
Sbjct: 324 DFEIGHFLRERIIPRSVLYFTGEAIE 349


>sp|Q4U0Y4|NPL1A_XENLA Nucleosome assembly protein 1-like 1-A
OS=Xenopus laevis GN=nap1l1-A PE=1 SV=1
Length = 392

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 22/26 (84%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G +R++IIP +V +FTGEA++
Sbjct: 323 DFEIGHFLRERIIPRSVLYFTGEAIE 348


>sp|Q5U2Z3|NP1L4_RAT Nucleosome assembly protein 1-like 4 OS=Rattus
norvegicus GN=Nap1l4 PE=2 SV=1
Length = 386

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G R++I+P AV +FTGEA++
Sbjct: 316 DFEIGHFFRERIVPRAVLYFTGEAIE 341


>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus
musculus GN=Nap1l4 PE=1 SV=1
Length = 375

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G R++I+P AV +FTGEA++
Sbjct: 316 DFEIGHFFRERIVPRAVLYFTGEAIE 341


>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo
sapiens GN=NAP1L4 PE=1 SV=1
Length = 375

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G R++I+P AV +FTGEA++
Sbjct: 316 DFEIGHFFRERIVPRAVLYFTGEAIE 341


>sp|Q2TA40|NP1L4_BOVIN Nucleosome assembly protein 1-like 4 OS=Bos
taurus GN=NAP1L4 PE=2 SV=1
Length = 386

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G R++I+P AV +FTGEA++
Sbjct: 316 DFEIGHFFRERIVPRAVLYFTGEAIE 341


>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1
OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1
Length = 393

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 22/26 (84%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G +R++IIP +V +FTGEA++
Sbjct: 324 DFEIGHFLRERIIPRSVLYFTGEAIE 349


>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Rattus
norvegicus GN=Nap1l1 PE=2 SV=1
Length = 390

Score = 34.7 bits (78), Expect = 0.43
Identities = 12/26 (46%), Positives = 22/26 (84%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ 79
D+++G +R++IIP +V +FTGEA++
Sbjct: 322 DFEIGHFLRERIIPRSVLYFTGEAIE 347


tr_hit_id A9TVZ4
Definition tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family OS=Physcomitrella patens subsp. patens
Align length 103
Score (bit) 67.4
E-value 7.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958517|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D12, 5'
(638 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family OS=Phy... 67 7e-10
tr|Q94K07|Q94K07_ARATH Nucleosome assembly protein OS=Arabidopsi... 64 1e-08
tr|A7P6S7|A7P6S7_VITVI Chromosome chr9 scaffold_7, whole genome ... 64 1e-08
tr|Q94I90|Q94I90_ATRBE Putative nucleosome assembly protein 1 (F... 63 2e-08
tr|B7FJ69|B7FJ69_MEDTR Putative uncharacterized protein OS=Medic... 62 3e-08
tr|Q84UX6|Q84UX6_MAIZE Nucleosome/chromatin assembly factor grou... 61 7e-08
tr|Q39892|Q39892_SOYBN Nucleosome assembly protein 1 OS=Glycine ... 61 7e-08
tr|Q70Z18|Q70Z18_TOBAC Nucleosome assembly protein 1-like protei... 60 1e-07
tr|Q9LTS5|Q9LTS5_ARATH Nucleosome assembly protein OS=Arabidopsi... 59 2e-07
tr|Q70Z17|Q70Z17_TOBAC Nucleosome assembly protein 1-like protei... 59 2e-07
tr|Q70Z21|Q70Z21_ORYSA Nucleosome assembly protein 1-like protei... 59 3e-07
tr|Q5VND6|Q5VND6_ORYSJ Os06g0149400 protein OS=Oryza sativa subs... 59 3e-07
tr|B8B2R4|B8B2R4_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07
tr|A7PE61|A7PE61_VITVI Chromosome chr11 scaffold_13, whole genom... 58 4e-07
tr|Q70Z16|Q70Z16_TOBAC Nucleosome assembly protein 1-like protei... 57 9e-07
tr|Q8L8G5|Q8L8G5_MAIZE Nucleosome/chromatin assembly factor grou... 56 2e-06
tr|Q70Z20|Q70Z20_ORYSA Nucleosome assembly protein 1-like protei... 56 2e-06
tr|Q53WK4|Q53WK4_ORYSJ Os05g0539700 protein OS=Oryza sativa subs... 56 2e-06
tr|B8AW64|B8AW64_ORYSI Putative uncharacterized protein OS=Oryza... 56 2e-06
tr|B8A161|B8A161_MAIZE Putative uncharacterized protein OS=Zea m... 56 2e-06
tr|A3B8F1|A3B8F1_ORYSJ Putative uncharacterized protein OS=Oryza... 55 3e-06
tr|Q70Z19|Q70Z19_TOBAC Nucleosome assembly protein 1-like protei... 55 5e-06
tr|Q2HVE3|Q2HVE3_MEDTR Nucleosome assembly protein (NAP) OS=Medi... 54 6e-06
tr|Q5MGA9|Q5MGA9_ORYSI Nucleosome assembly protein 1-like protei... 54 1e-05
tr|P93488|P93488_PEA NAP1Ps OS=Pisum sativum PE=2 SV=1 54 1e-05
tr|Q9ZUP3|Q9ZUP3_ARATH Putative nucleosome assembly protein OS=A... 52 2e-05
tr|A2ZX50|A2ZX50_ORYSJ Putative uncharacterized protein OS=Oryza... 52 3e-05
tr|A8MRK6|A8MRK6_ARATH Uncharacterized protein At2g19480.2 OS=Ar... 52 4e-05
tr|Q9SZI2|Q9SZI2_ARATH Nucleosome assembly protein I-like protei... 51 5e-05
tr|Q38809|Q38809_ARATH Arabidopsis thaliana Col-0 nucleosome ass... 51 5e-05

>tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family
OS=Physcomitrella patens subsp. patens GN=NFA1501 PE=3
SV=1
Length = 393

Score = 67.4 bits (163), Expect = 7e-10
Identities = 44/103 (42%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 172
DYDVGSTIRDKIIPHAVSWFTGEALQG
Sbjct: 291 DYDVGSTIRDKIIPHAVSWFTGEALQGEDFEDDDEEGDDDDDDDEDDYDEDEDDEEEDED 350

Query: 173 XXXXXXXXAKPRKQSAPLSKVGPKPA------SGEQPPECKQQ 283
+ RK+ P K G A SGEQPPECKQQ
Sbjct: 351 EEDDDEEEVRGRKRVVPTRKGGASKASDGQQQSGEQPPECKQQ 393


>tr|Q94K07|Q94K07_ARATH Nucleosome assembly protein OS=Arabidopsis
thaliana GN=MHM17.6 PE=2 SV=1
Length = 374

Score = 63.5 bits (153), Expect = 1e-08
Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178
DYD+GSTIR+KIIPHAVSWFTGEA++G
Sbjct: 275 DYDIGSTIREKIIPHAVSWFTGEAIEGEEFEIDNDDEDDIDEDEDEDEEDEDEDEEEDDE 334

Query: 179 XXXXXXAKPRKQSAPLSKVGPKP-----ASGEQPPECKQQ 283
+K +K+ + L K G +P GE+PPECKQQ
Sbjct: 335 DEEEEVSKTKKKPSVLHKKGGRPQVTDDQQGERPPECKQQ 374


>tr|A7P6S7|A7P6S7_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034186001
PE=3 SV=1
Length = 375

Score = 63.5 bits (153), Expect = 1e-08
Identities = 39/95 (41%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
DYD+GSTIRDKIIPHAVSWFTGEA+QG
Sbjct: 282 DYDIGSTIRDKIIPHAVSWFTGEAVQGDEFEDIEDDDDEDGDDEDEEDEEDEDEEEDDED 341

Query: 182 XXXXXA-KPRKQSAPLSKVGPKPASGEQPPECKQQ 283
K RK+ + S+ G + GE+PPECKQQ
Sbjct: 342 EDEEEEDKSRKKKSGRSRAG-EGQLGERPPECKQQ 375


>tr|Q94I90|Q94I90_ATRBE Putative nucleosome assembly protein 1
(Fragment) OS=Atropa belladonna PE=2 SV=1
Length = 119

Score = 62.8 bits (151), Expect = 2e-08
Identities = 41/98 (41%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
DYDVGSTIRDKIIPHAVSWFTGEA +
Sbjct: 24 DYDVGSTIRDKIIPHAVSWFTGEAAEDDYADLEDDEDEDEDDEEDEDEDEEDDEDEEDEE 83

Query: 182 XXXXXAKPRKQSAPLSKVGPKPA----SGEQPPECKQQ 283
K K SA + G PA SGE+PPECKQQ
Sbjct: 84 DDAKTKK--KSSAARKRSGRAPAGDGQSGERPPECKQQ 119


>tr|B7FJ69|B7FJ69_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 368

Score = 62.0 bits (149), Expect = 3e-08
Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
DYD+GSTIRDK IPHAVSWFTGEA QG
Sbjct: 272 DYDIGSTIRDKTIPHAVSWFTGEAAQGEEFGDLDDEDDDEDDDAEDDDEDEDEDEDEDDD 331

Query: 182 XXXXXAKPRKQSAP----LSKVGPKPASGEQPPECKQQ 283
K +K+S+ ++++G + GE+PPECKQQ
Sbjct: 332 EDEEETKTKKKSSAKKSGIAQLG-EGQQGERPPECKQQ 368


>tr|Q84UX6|Q84UX6_MAIZE Nucleosome/chromatin assembly factor group A
OS=Zea mays GN=nfa101 PE=2 SV=1
Length = 380

Score = 60.8 bits (146), Expect = 7e-08
Identities = 38/98 (38%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
DYD+G+TIRDKIIPHAVSWFTGEA+QG
Sbjct: 283 DYDIGTTIRDKIIPHAVSWFTGEAVQGEDFGELGDDDEDDDDEDDDEDDEDEEEDDDEEE 342

Query: 182 XXXXXAKP-RKQSAPLSKVGPKPAS---GEQPPECKQQ 283
+KP RK + P+ S EQP ECKQQ
Sbjct: 343 DDEEESKPARKSGSGRRHKAPQKVSQGNAEQPAECKQQ 380


>tr|Q39892|Q39892_SOYBN Nucleosome assembly protein 1 OS=Glycine max
GN=SNAP-1 PE=2 SV=1
Length = 358

Score = 60.8 bits (146), Expect = 7e-08
Identities = 36/94 (38%), Positives = 44/94 (46%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
DYD+GST+RDKIIPHAVSWFTGEA QG
Sbjct: 270 DYDIGSTLRDKIIPHAVSWFTGEAAQG---DEFEDLEDDEDEEEDEDEDEDEEDDEDEDD 326

Query: 182 XXXXXAKPRKQSAPLSKVGPKPASGEQPPECKQQ 283
K +K+ + ++ G GE+PPECKQQ
Sbjct: 327 EEEDDTKTKKKKSGKAQAG--DGDGERPPECKQQ 358


>tr|Q70Z18|Q70Z18_TOBAC Nucleosome assembly protein 1-like protein 2
OS=Nicotiana tabacum GN=nap1_L2 PE=2 SV=1
Length = 377

Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/102 (39%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 172
DYD+GSTIRDKIIPHAVSWFTGEA +
Sbjct: 276 DYDIGSTIRDKIIPHAVSWFTGEAAEDDYAELEDDEDEDDDEEDDEDEDEEEEDEEDDED 335

Query: 173 XXXXXXXXAKPRKQSAPLSKVGPKPA-----SGEQPPECKQQ 283
+K SA K G PA SGE+PPECKQQ
Sbjct: 336 EEEDEDETKTKKKTSAVPKKSGRVPAAADGQSGERPPECKQQ 377


>tr|Q9LTS5|Q9LTS5_ARATH Nucleosome assembly protein OS=Arabidopsis
thaliana PE=3 SV=1
Length = 374

Score = 59.3 bits (142), Expect = 2e-07
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178
DYD+GSTIR+KIIPHAVSWFTGEA++G
Sbjct: 275 DYDIGSTIREKIIPHAVSWFTGEAIEGEEFEIDNDDEDDIDEDEDEDEEDEDEDEEEDDE 334

Query: 179 XXXXXXAKPRKQSAPLSKVGPKP-----ASGEQPPECKQQ 283
+K +K+ + + G +P GE+PPECKQQ
Sbjct: 335 DEEEEVSKTKKKFEIILQKGGRPQVTDDQQGERPPECKQQ 374


>tr|Q70Z17|Q70Z17_TOBAC Nucleosome assembly protein 1-like protein 3
OS=Nicotiana tabacum GN=nap1_L3 PE=2 SV=1
Length = 377

Score = 59.3 bits (142), Expect = 2e-07
Identities = 39/102 (38%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +2

Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169
DYD+GSTIRDKIIPHAVSWFTGEA Q
Sbjct: 276 DYDIGSTIRDKIIPHAVSWFTGEAAQDEDYIDLEDDEDEEDDEDEDEDEEDEEEEDEDED 335

Query: 170 XXXXXXXXXAKPRKQSAPLSKVGPKPAS----GEQPPECKQQ 283
+K SA + G PA+ GE+PPECKQQ
Sbjct: 336 DDDEDEHVTKTKKKSSAGRKRSGGAPAADGQPGERPPECKQQ 377