DK958517 |
Clone id |
TST39A01NGRL0002_D12 |
Library |
TST39 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_D12. 5' end sequence. |
Accession |
DK958517 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4103Contig1 |
Sequence |
AGATTATGATGTTGGGTCAACAATAAGGGACAAGATTATACCACATGCCGTCTCTTGGTT CACTGGAGAGGCTTTACAAGGAGAAGAGTTTGAGGATGTTGATGAAGATGATGAAAGTGG TGACATGGAGGACGAAGATGAGGATGAAGATGAAGACGATGAGGATGATGAAGATGAAGC AGAGGATGAGGATGAAGCAAAACCCAGAAAGCAGTCTGCACCCTTATCAAAGGTTGGGCC GAAGCCTGCTTCAGGGGAGCAACCCCCAGAATGCAAGCAGCAATAGAGTTGTATGTTTGT ATAATTTGCTGTGCTTTTCTCGTCTCTTGGGCTTTGAGGTTGAGTAAGTTTCTCTTCATG TGTGTTGACGGTTTCTATGATGAGGTCTGAGGACAGGCGATTATTTTTCATGCACATAAA GCAATTGTACACAAGGGGTGCTCTATTGTTTAGCCAGTCAGTTTGGCTTTGACAGAAGGT TGCGGTAGCGATTTTGAGGAGAGCTTGGCCTTTTTAGGGGCTGCCAAGTTCTTCAAGATG TAGAGCAAACAGTTTTGTAGGTGTCGTTCATATCATATATATTATGTCAAGGTGTAGTCT ATTACTTCAAGAGCACATTGGCATGTAACTCATCCAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25293 |
Definition |
sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces cerevisiae |
Align length |
26 |
Score (bit) |
40.8 |
E-value |
0.006 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TVZ4 |
Definition |
tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family OS=Physcomitrella patens subsp. patens |
Align length |
103 |
Score (bit) |
67.4 |
E-value |
7.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958517|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_D12, 5' (638 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family OS=Phy... 67 7e-10 tr|Q94K07|Q94K07_ARATH Nucleosome assembly protein OS=Arabidopsi... 64 1e-08 tr|A7P6S7|A7P6S7_VITVI Chromosome chr9 scaffold_7, whole genome ... 64 1e-08 tr|Q94I90|Q94I90_ATRBE Putative nucleosome assembly protein 1 (F... 63 2e-08 tr|B7FJ69|B7FJ69_MEDTR Putative uncharacterized protein OS=Medic... 62 3e-08 tr|Q84UX6|Q84UX6_MAIZE Nucleosome/chromatin assembly factor grou... 61 7e-08 tr|Q39892|Q39892_SOYBN Nucleosome assembly protein 1 OS=Glycine ... 61 7e-08 tr|Q70Z18|Q70Z18_TOBAC Nucleosome assembly protein 1-like protei... 60 1e-07 tr|Q9LTS5|Q9LTS5_ARATH Nucleosome assembly protein OS=Arabidopsi... 59 2e-07 tr|Q70Z17|Q70Z17_TOBAC Nucleosome assembly protein 1-like protei... 59 2e-07 tr|Q70Z21|Q70Z21_ORYSA Nucleosome assembly protein 1-like protei... 59 3e-07 tr|Q5VND6|Q5VND6_ORYSJ Os06g0149400 protein OS=Oryza sativa subs... 59 3e-07 tr|B8B2R4|B8B2R4_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|A7PE61|A7PE61_VITVI Chromosome chr11 scaffold_13, whole genom... 58 4e-07 tr|Q70Z16|Q70Z16_TOBAC Nucleosome assembly protein 1-like protei... 57 9e-07 tr|Q8L8G5|Q8L8G5_MAIZE Nucleosome/chromatin assembly factor grou... 56 2e-06 tr|Q70Z20|Q70Z20_ORYSA Nucleosome assembly protein 1-like protei... 56 2e-06 tr|Q53WK4|Q53WK4_ORYSJ Os05g0539700 protein OS=Oryza sativa subs... 56 2e-06 tr|B8AW64|B8AW64_ORYSI Putative uncharacterized protein OS=Oryza... 56 2e-06 tr|B8A161|B8A161_MAIZE Putative uncharacterized protein OS=Zea m... 56 2e-06 tr|A3B8F1|A3B8F1_ORYSJ Putative uncharacterized protein OS=Oryza... 55 3e-06 tr|Q70Z19|Q70Z19_TOBAC Nucleosome assembly protein 1-like protei... 55 5e-06 tr|Q2HVE3|Q2HVE3_MEDTR Nucleosome assembly protein (NAP) OS=Medi... 54 6e-06 tr|Q5MGA9|Q5MGA9_ORYSI Nucleosome assembly protein 1-like protei... 54 1e-05 tr|P93488|P93488_PEA NAP1Ps OS=Pisum sativum PE=2 SV=1 54 1e-05 tr|Q9ZUP3|Q9ZUP3_ARATH Putative nucleosome assembly protein OS=A... 52 2e-05 tr|A2ZX50|A2ZX50_ORYSJ Putative uncharacterized protein OS=Oryza... 52 3e-05 tr|A8MRK6|A8MRK6_ARATH Uncharacterized protein At2g19480.2 OS=Ar... 52 4e-05 tr|Q9SZI2|Q9SZI2_ARATH Nucleosome assembly protein I-like protei... 51 5e-05 tr|Q38809|Q38809_ARATH Arabidopsis thaliana Col-0 nucleosome ass... 51 5e-05
>tr|A9TVZ4|A9TVZ4_PHYPA Nucleosome assembly protein family OS=Physcomitrella patens subsp. patens GN=NFA1501 PE=3 SV=1 Length = 393
Score = 67.4 bits (163), Expect = 7e-10 Identities = 44/103 (42%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 172 DYDVGSTIRDKIIPHAVSWFTGEALQG Sbjct: 291 DYDVGSTIRDKIIPHAVSWFTGEALQGEDFEDDDEEGDDDDDDDEDDYDEDEDDEEEDED 350
Query: 173 XXXXXXXXAKPRKQSAPLSKVGPKPA------SGEQPPECKQQ 283 + RK+ P K G A SGEQPPECKQQ Sbjct: 351 EEDDDEEEVRGRKRVVPTRKGGASKASDGQQQSGEQPPECKQQ 393
>tr|Q94K07|Q94K07_ARATH Nucleosome assembly protein OS=Arabidopsis thaliana GN=MHM17.6 PE=2 SV=1 Length = 374
Score = 63.5 bits (153), Expect = 1e-08 Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178 DYD+GSTIR+KIIPHAVSWFTGEA++G Sbjct: 275 DYDIGSTIREKIIPHAVSWFTGEAIEGEEFEIDNDDEDDIDEDEDEDEEDEDEDEEEDDE 334
Query: 179 XXXXXXAKPRKQSAPLSKVGPKP-----ASGEQPPECKQQ 283 +K +K+ + L K G +P GE+PPECKQQ Sbjct: 335 DEEEEVSKTKKKPSVLHKKGGRPQVTDDQQGERPPECKQQ 374
>tr|A7P6S7|A7P6S7_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034186001 PE=3 SV=1 Length = 375
Score = 63.5 bits (153), Expect = 1e-08 Identities = 39/95 (41%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181 DYD+GSTIRDKIIPHAVSWFTGEA+QG Sbjct: 282 DYDIGSTIRDKIIPHAVSWFTGEAVQGDEFEDIEDDDDEDGDDEDEEDEEDEDEEEDDED 341
Query: 182 XXXXXA-KPRKQSAPLSKVGPKPASGEQPPECKQQ 283 K RK+ + S+ G + GE+PPECKQQ Sbjct: 342 EDEEEEDKSRKKKSGRSRAG-EGQLGERPPECKQQ 375
>tr|Q94I90|Q94I90_ATRBE Putative nucleosome assembly protein 1 (Fragment) OS=Atropa belladonna PE=2 SV=1 Length = 119
Score = 62.8 bits (151), Expect = 2e-08 Identities = 41/98 (41%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181 DYDVGSTIRDKIIPHAVSWFTGEA + Sbjct: 24 DYDVGSTIRDKIIPHAVSWFTGEAAEDDYADLEDDEDEDEDDEEDEDEDEEDDEDEEDEE 83
Query: 182 XXXXXAKPRKQSAPLSKVGPKPA----SGEQPPECKQQ 283 K K SA + G PA SGE+PPECKQQ Sbjct: 84 DDAKTKK--KSSAARKRSGRAPAGDGQSGERPPECKQQ 119
>tr|B7FJ69|B7FJ69_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 368
Score = 62.0 bits (149), Expect = 3e-08 Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181 DYD+GSTIRDK IPHAVSWFTGEA QG Sbjct: 272 DYDIGSTIRDKTIPHAVSWFTGEAAQGEEFGDLDDEDDDEDDDAEDDDEDEDEDEDEDDD 331
Query: 182 XXXXXAKPRKQSAP----LSKVGPKPASGEQPPECKQQ 283 K +K+S+ ++++G + GE+PPECKQQ Sbjct: 332 EDEEETKTKKKSSAKKSGIAQLG-EGQQGERPPECKQQ 368
>tr|Q84UX6|Q84UX6_MAIZE Nucleosome/chromatin assembly factor group A OS=Zea mays GN=nfa101 PE=2 SV=1 Length = 380
Score = 60.8 bits (146), Expect = 7e-08 Identities = 38/98 (38%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181 DYD+G+TIRDKIIPHAVSWFTGEA+QG Sbjct: 283 DYDIGTTIRDKIIPHAVSWFTGEAVQGEDFGELGDDDEDDDDEDDDEDDEDEEEDDDEEE 342
Query: 182 XXXXXAKP-RKQSAPLSKVGPKPAS---GEQPPECKQQ 283 +KP RK + P+ S EQP ECKQQ Sbjct: 343 DDEEESKPARKSGSGRRHKAPQKVSQGNAEQPAECKQQ 380
>tr|Q39892|Q39892_SOYBN Nucleosome assembly protein 1 OS=Glycine max GN=SNAP-1 PE=2 SV=1 Length = 358
Score = 60.8 bits (146), Expect = 7e-08 Identities = 36/94 (38%), Positives = 44/94 (46%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181 DYD+GST+RDKIIPHAVSWFTGEA QG Sbjct: 270 DYDIGSTLRDKIIPHAVSWFTGEAAQG---DEFEDLEDDEDEEEDEDEDEDEEDDEDEDD 326
Query: 182 XXXXXAKPRKQSAPLSKVGPKPASGEQPPECKQQ 283 K +K+ + ++ G GE+PPECKQQ Sbjct: 327 EEEDDTKTKKKKSGKAQAG--DGDGERPPECKQQ 358
>tr|Q70Z18|Q70Z18_TOBAC Nucleosome assembly protein 1-like protein 2 OS=Nicotiana tabacum GN=nap1_L2 PE=2 SV=1 Length = 377
Score = 59.7 bits (143), Expect = 1e-07 Identities = 40/102 (39%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQ---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 172 DYD+GSTIRDKIIPHAVSWFTGEA + Sbjct: 276 DYDIGSTIRDKIIPHAVSWFTGEAAEDDYAELEDDEDEDDDEEDDEDEDEEEEDEEDDED 335
Query: 173 XXXXXXXXAKPRKQSAPLSKVGPKPA-----SGEQPPECKQQ 283 +K SA K G PA SGE+PPECKQQ Sbjct: 336 EEEDEDETKTKKKTSAVPKKSGRVPAAADGQSGERPPECKQQ 377
>tr|Q9LTS5|Q9LTS5_ARATH Nucleosome assembly protein OS=Arabidopsis thaliana PE=3 SV=1 Length = 374
Score = 59.3 bits (142), Expect = 2e-07 Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178 DYD+GSTIR+KIIPHAVSWFTGEA++G Sbjct: 275 DYDIGSTIREKIIPHAVSWFTGEAIEGEEFEIDNDDEDDIDEDEDEDEEDEDEDEEEDDE 334
Query: 179 XXXXXXAKPRKQSAPLSKVGPKP-----ASGEQPPECKQQ 283 +K +K+ + + G +P GE+PPECKQQ Sbjct: 335 DEEEEVSKTKKKFEIILQKGGRPQVTDDQQGERPPECKQQ 374
>tr|Q70Z17|Q70Z17_TOBAC Nucleosome assembly protein 1-like protein 3 OS=Nicotiana tabacum GN=nap1_L3 PE=2 SV=1 Length = 377
Score = 59.3 bits (142), Expect = 2e-07 Identities = 39/102 (38%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Frame = +2
Query: 2 DYDVGSTIRDKIIPHAVSWFTGEALQG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169 DYD+GSTIRDKIIPHAVSWFTGEA Q Sbjct: 276 DYDIGSTIRDKIIPHAVSWFTGEAAQDEDYIDLEDDEDEEDDEDEDEDEEDEEEEDEDED 335
Query: 170 XXXXXXXXXAKPRKQSAPLSKVGPKPAS----GEQPPECKQQ 283 +K SA + G PA+ GE+PPECKQQ Sbjct: 336 DDDEDEHVTKTKKKSSAGRKRSGGAPAADGQPGERPPECKQQ 377
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