DK958529 [AcEST]

DK958529
Clone id	TST39A01NGRL0002_D24
Library	TST39
Length	620
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_D24. 5' end sequence.
Accession	DK958529
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL1250Contig1
Sequence	GAGAGTCAGAACAGCAGGCAGCACCCCCCTCAGGCGAGCTGCAGCTCAAAGCGGCGTCAT CTTTCGGTGACCGCCCTCATCATCATCGTCTGCATGTGCCAGACCTGGTGCATCGCTCGT CGAGGTTGGTGGCCGCCTCTCAGTTTTTCTCCACTCATTTACTGCCCCCGGCCCCCCAGT TCTGAGCCCCGTTCTTACGTGCCCCTCTCCCTCTTTTCTCTCTCTGCGGCGGCGCGCGCG CACACAGCCTATTGCTCAGTTTGCTCTCTCTCTCTCTCTCTCACACACACACACACACAC ACACACACACACTCTCGCGCGCACGCACATTACATGCATTGCTGGGGGGGGGGGTGACCG TCACCTGGCTTTCCTTCCTCTCACGTCTATTGGATGCTGCTAAGTATGCACTGACAATGC TCTTCTGTTCTATGATGTCGTCTTCTCTTCCGAGTAGTAATGTCTCCTCGCTCGCCTCAA GCCTGCACCTGCAGAACCACAACCCTGTAGGAGCATCTTCATCGACATCAACAGCAACAG TCTTGTCGCCTCCTCCTCCAGCACCTACCAGCATTCCTAGTCGGCAGCTGCGGACTCCTC ATAGTGGATATCACTTTGAT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q94FY7
Definition	sp\|Q94FY7\|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana
Align length	13
Score (bit)	32.7
E-value	1.6
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK958529\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_D24, 5' (620 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q94FY7\|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabid... 33 1.6 sp\|Q94FY8\|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic ... 32 2.6 >sp\|Q94FY7\|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1 Length = 488 Score = 32.7 bits (73), Expect = 1.6 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +3 Query: 582 RQLRTPHSGYHFD 620 R+LRTPHSGYHFD Sbjct: 73 RELRTPHSGYHFD 85 >sp\|Q94FY8\|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1 Length = 474 Score = 32.0 bits (71), Expect = 2.6 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = +3 Query: 582 RQLRTPHSGYHFD 620 R LRTPHSGYHFD Sbjct: 62 RSLRTPHSGYHFD 74
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q851T3
Definition	tr\|Q851T3\|Q851T3_ORYSJ Putative gag-pol OS=Oryza sativa subsp. japonica
Align length	50
Score (bit)	37.0
E-value	0.94
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK958529\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_D24, 5' (620 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q851T3\|Q851T3_ORYSJ Putative gag-pol OS=Oryza sativa subsp. j... 37 0.94 >tr\|Q851T3\|Q851T3_ORYSJ Putative gag-pol OS=Oryza sativa subsp. japonica GN=OSJNBa0051C19.13 PE=4 SV=1 Length = 971 Score = 37.0 bits (84), Expect = 0.94 Identities = 21/50 (42%), Positives = 25/50 (50%) Frame = +2 Query: 98 ARPGASLVEVGGRLSVFLHSFTAPGPPVLSPVLTCPSPSFLSLRRRARTQ 247 A P AS+ EVGG S TAP P L+P + P+PS L R Q Sbjct: 29 AEPSASVAEVGGAPSALA---TAPSPSALAPSASAPAPSLLPSARATSEQ 75