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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958532
Clone id TST39A01NGRL0002_E03
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_E03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCATTTGTCAGCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTC
GTTGCCGGCTGCATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACG
CAGCGGCAGCTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCAGCGCGTGAATC
AGCACGGTGGGCTATTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTC
TTCTTCCTCCTCCTCCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAG
CTCGAAGTGCTTGCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTC
CTTTCCCTACATCCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCC
CGCTTCATGTCACTGCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGG
TCTTTACGGACAGAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAA
GCGTACCTGCTGCTGCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGG
ATAGGTTGAAGACTGGCTATCTCAAATTCAAGGAAAACTACATAAAAAATCAAGCACTTG
TGAAGTCGCTGGCAGAAACTCAGACGCCCTCGTACATGA
■■Homology search results ■■ -
sp_hit_id P46511
Definition sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii
Align length 36
Score (bit) 37.7
E-value 0.06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E03, 5'
         (699 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2...    38   0.060
sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=...    38   0.060
sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P...    38   0.060
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac...    37   0.13 
sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=...    36   0.17 
sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa...    36   0.23 
sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid...    35   0.30 
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian...    35   0.39 
sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti...    33   1.1  

>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2
           SV=1
          Length = 330

 Score = 37.7 bits (86), Expect = 0.060
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFM 157


>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=2
          Length = 330

 Score = 37.7 bits (86), Expect = 0.060
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFM 157


>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2
           SV=1
          Length = 330

 Score = 37.7 bits (86), Expect = 0.060
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFM 157


>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=2
          Length = 319

 Score = 36.6 bits (83), Expect = 0.13
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 576 TEVETLPLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           T   + P+ R+K G++KFK E Y KN AL   L++ Q P +M
Sbjct: 105 TPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFM 146


>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2
           SV=1
          Length = 329

 Score = 36.2 bits (82), Expect = 0.17
 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+K+G++KFK E ++ N  L   LA+ Q+P +M
Sbjct: 121 PVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFM 156


>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 600 DRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           +R+KTG+L FK E Y KN AL   LA+ Q+P +M
Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFM 155


>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic
           OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2
          Length = 347

 Score = 35.4 bits (80), Expect = 0.30
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++ +K G++KFK E Y  N AL   LA+ Q+P YM
Sbjct: 128 PVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYM 163


>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana
           GN=CA2 PE=1 SV=2
          Length = 259

 Score = 35.0 bits (79), Expect = 0.39
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+K G++ FK E Y  N AL   LA+ Q+P YM
Sbjct: 51  PVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYM 86


>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 321

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++ +K G++ FK E Y KN AL   L++ Q+P +M
Sbjct: 113 PVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFM 148
tr_hit_id Q84Y09
Definition tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis
Align length 36
Score (bit) 40.4
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E03, 5'
         (699 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis P...    40   0.11 
tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    40   0.14 
tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    40   0.14 
tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    38   0.71 
tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    38   0.71 
tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra termina...    37   1.6  
tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus GN...    36   2.7  
tr|Q2Q063|Q2Q063_FLAPR Carbonic anhydrase OS=Flaveria pringlei P...    36   2.7  
tr|Q2Q062|Q2Q062_FLALI Carbonic anhydrase OS=Flaveria linearis P...    36   2.7  
tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa...    36   2.7  
tr|A9PED7|A9PED7_POPTR Carbonic anhydrase OS=Populus trichocarpa...    36   2.7  
tr|Q56X90|Q56X90_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    35   3.5  
tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    35   4.6  
tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    35   4.6  
tr|Q8W183|Q8W183_TOBAC Carbonic anhydrase OS=Nicotiana tabacum P...    35   4.6  
tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum ...    35   4.6  
tr|Q41089|Q41089_9ROSI Carbonic anhydrase OS=Populus tremula x P...    35   4.6  
tr|Q41088|Q41088_9ROSI Carbonic anhydrase OS=Populus tremula x P...    35   4.6  
tr|Q3E9H5|Q3E9H5_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    35   4.6  
tr|Q2V377|Q2V377_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    35   4.6  
tr|Q2V376|Q2V376_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    35   4.6  
tr|A9PJH1|A9PJH1_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    35   4.6  
tr|A9PIY3|A9PIY3_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    35   4.6  
tr|A8MQY4|A8MQY4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    35   4.6  
tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis GN=U...    35   4.6  

>tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=1
          Length = 258

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+KTG+ KFK E Y+KN AL   L++ Q+P +M
Sbjct: 50  PVERIKTGFAKFKTEKYLKNPALYGELSKGQSPKFM 85


>tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 280

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +3

Query: 597 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           ++R+KTG+ +FK E Y+KN  L   LA+TQTP ++
Sbjct: 71  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFL 105


>tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 258

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +3

Query: 597 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           ++R+KTG+ +FK E Y+KN  L   LA+TQTP ++
Sbjct: 49  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFL 83


>tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g23730 PE=2 SV=1
          Length = 258

 Score = 37.7 bits (86), Expect = 0.71
 Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +3

Query: 597 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           ++R+K+G+L FK  NY KN  L  SLA++QTP ++
Sbjct: 49  VERIKSGFLHFKTNNYEKNPTLYNSLAKSQTPKFL 83


>tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00020732001 PE=3 SV=1
          Length = 324

 Score = 37.7 bits (86), Expect = 0.71
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+KTG++ FK E Y KN AL   LA+ Q+P +M
Sbjct: 116 PVERMKTGFIYFKKEKYDKNPALHAELAKGQSPKFM 151


>tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra terminalis
           PE=2 SV=1
          Length = 324

 Score = 36.6 bits (83), Expect = 1.6
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+KTG++ FK E Y  N AL   LA+ Q+P +M
Sbjct: 116 PIERMKTGFIHFKKEKYETNPALFGELAKGQSPKFM 151


>tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus
           GN=CipCa1 PE=2 SV=2
          Length = 328

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 600 DRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           DR+K+G+L FK E Y KN AL   LA+ Q+P +M
Sbjct: 122 DRIKSGFLYFKKEKYDKNPALYGELAKGQSPKFM 155


>tr|Q2Q063|Q2Q063_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2
           SV=1
          Length = 328

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 597 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           ++R+KTG+ KFK E Y+ N AL   L++ Q+P +M
Sbjct: 121 VERIKTGFAKFKTEKYLTNPALYDELSKGQSPKFM 155


>tr|Q2Q062|Q2Q062_FLALI Carbonic anhydrase OS=Flaveria linearis PE=2
           SV=1
          Length = 331

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 597 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           ++R+KTG+ KFK E Y+ N AL   L++ Q+P +M
Sbjct: 124 VERIKTGFAKFKTEKYLTNPALYDELSKGQSPKFM 158


>tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa
           PE=2 SV=1
          Length = 256

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 594 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPSYM 698
           P++R+KTG+++F+ E Y KN  L  +LA+ Q+P +M
Sbjct: 48  PVERIKTGFVQFRTEKYEKNPDLYGALAKGQSPKFM 83