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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958533
Clone id TST39A01NGRL0002_E04
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_E04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGACTGAGGATCATGGCCCGCTTCTTTAGCAAGGAGCACTGGTGGGCATTCCTCTTGATC
TTCCTCGCCCTCGCCCTCCTGCAGGCCGCCGTCTGCTACTACTGCCGATGGAGCTCGCGC
ACCCTCGCCCGCGACCTCAAGATAGCTCAAGCGGAGCTCTCTGCTGCAGAGCCCGACCAT
ACAAAAGAAGAAGACAAGGATGCGGAAAAGGGGCTAGCCCTAAAATAGGTGCAGTGCTCG
CAGGTATGGCCATTTCAGCAAATTCTGACTTCCTTATTGCAATATGAAAGTGGGCTCCCG
TTCCTGATTTGCCTCCATCGTCTTCATCGAAGGAGGCAGTGGGGTTTTCTGCTCATATAG
AAATTACCCCATTTTTGTGTGTGTGTGGGAGGACTTGGATGCCATGTAATTGAAAGATCT
GTCTCTGTGTGCGAAATCCGTTCATTGTATGGGAAGAAGCTACCTTATTCATCATGGAAG
TTCGCACAATCGCCGTGCAGTATGGGGTTTTGTGGCTATGCTGATTTCTTTACATCTGGC
ACTTCCTTGCAAGACATGTGCAATAATACAGAAGAGTGACATACATGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P12752
Definition sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=Streptomyces griseus
Align length 39
Score (bit) 32.3
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958533|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E04, 5'
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=...    32   1.8  
sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=...    32   1.8  
sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus...    32   2.3  
sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus...    32   2.3  
sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabdit...    32   2.3  
sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculu...    31   4.0  
sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapien...    31   4.0  
sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis famil...    31   4.0  
sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus ...    31   4.0  
sp|A4GVD1|CXG1_PIG Gap junction gamma-1 protein OS=Sus scrofa GN...    31   5.2  
sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-contain...    31   5.2  

>sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region
           OS=Streptomyces griseus PE=4 SV=1
          Length = 238

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 117 AHPRPRPQDSSSGALCC-RARPYKRRRQGCGKGASPKIG 230
           A P PRP+ +S    CC R+RPY RR +    G  P  G
Sbjct: 39  ASPSPRPRRASCATGCCGRSRPYARRLRRPADGHGPAGG 77


>sp|P62598|ARR12_ARATH Two-component response regulator ARR12
           OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1
          Length = 596

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 446 NERISHTETDLSITWHPSPPTHTQKWGN--FYMSRKPHCLLR*RRWRQIRNGSPLSYCN 276
           N+R+ H    +S + HP PP H     N  F +S  PH       W  + +   + +C+
Sbjct: 429 NKRLEHWSNAVSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEWNNVSSSYSIPFCD 487


>sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus
           (strain Western Reserve) GN=C3L PE=1 SV=1
          Length = 263

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 397 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 555
           G H+I  S S CE+ S    ++  + P       QSP S+      GY DF+T G+ +  
Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174

Query: 556 MCNN 567
            CN+
Sbjct: 175 SCNS 178


>sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus
           (strain Copenhagen) GN=C3L PE=3 SV=1
          Length = 263

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 397 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 555
           G H+I  S S CE+ S    ++  + P       QSP S+      GY DF+T G+ +  
Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174

Query: 556 MCNN 567
            CN+
Sbjct: 175 SCNS 178


>sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabditis
            elegans GN=anc-1 PE=1 SV=3
          Length = 8545

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 130  RDLKIAQAELSAAEPDHTKEEDKDAEKG 213
            R LK  +  L  A+PDH  E+D+D EKG
Sbjct: 8384 RLLKEIEPRLQLAQPDHDNEDDEDEEKG 8411


>sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculus
           GN=Gjc1 PE=1 SV=1
          Length = 396

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFIMEVRTIAVQYGVLWLC 521
           GF  H    PF  VC R  +PC  KI   +  P     E T+F++      + YGV  LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 522 *FLYIWHFL 548
             L IW  L
Sbjct: 243 LLLNIWEML 251


>sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapiens
           GN=GJC1 PE=2 SV=1
          Length = 396

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFIMEVRTIAVQYGVLWLC 521
           GF  H    PF  VC R  +PC  KI   +  P     E T+F++      + YGV  LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 522 *FLYIWHFL 548
             L IW  L
Sbjct: 243 LLLNIWEML 251


>sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis
           familiaris GN=GJC1 PE=3 SV=1
          Length = 396

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFIMEVRTIAVQYGVLWLC 521
           GF  H    PF  VC R  +PC  KI   +  P     E T+F++      + YGV  LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 522 *FLYIWHFL 548
             L IW  L
Sbjct: 243 LLLNIWEML 251


>sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus
           GN=GJC1 PE=2 SV=1
          Length = 396

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFIMEVRTIAVQYGVLWLC 521
           GF  H    PF  VC R  +PC  KI   +  P     E T+F++      + YGV  LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 522 *FLYIWHFL 548
             L IW  L
Sbjct: 243 LLLNIWEML 251


>sp|A4GVD1|CXG1_PIG Gap junction gamma-1 protein OS=Sus scrofa
           GN=GJC1 PE=2 SV=1
          Length = 396

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFIMEVRTIAVQYGVLWLC 521
           GF  H    PF  VC R  +PC  KI   +  P     E T+F++      + YGV  LC
Sbjct: 200 GFQVH----PFY-VCSR--VPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 522 *FLYIWHFL 548
             L IW  L
Sbjct: 243 LLLNIWEML 251
tr_hit_id A3BGD1
Definition tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 35.8
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958533|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E04, 5'
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.8  
tr|B3RCJ2|B3RCJ2_CUPTR Putative NnrS transmembrane protein OS=Cu...    35   3.1  
tr|Q6Z3H8|Q6Z3H8_ORYSJ Putative bzip-related transcription facto...    34   5.3  
tr|Q0J3V2|Q0J3V2_ORYSJ Os08g0551200 protein OS=Oryza sativa subs...    34   5.3  

>tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022103 PE=4 SV=1
          Length = 278

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
 Frame = +3

Query: 114 LAHPRPRPQDSSSGALCCR----------ARPYKRRRQGCGKGASPKIGA 233
           L HPRPRPQ SSS     R          +R ++RR   CG GA P   A
Sbjct: 38  LGHPRPRPQGSSSSPPSLRRPSIVKTQAPSRGWRRRAGTCGGGARPAAAA 87


>tr|B3RCJ2|B3RCJ2_CUPTR Putative NnrS transmembrane protein
           OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
           GN=RALTA_B2039 PE=4 SV=1
          Length = 397

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 228 GAVLAGMAISANSDFLIAI*KWAPVPDLPPS--SSSKEAVGFSAHIEITPFLCVCGRTW 398
           GAV A +A++A +  L  +  +AP P LPP    + +   GF+A I +  FL   GR W
Sbjct: 30  GAVFAALALAAWTAMLAGMHAFAPPPALPPMFWHAHEMVFGFAAAI-VVGFLFTAGRAW 87


>tr|Q6Z3H8|Q6Z3H8_ORYSJ Putative bzip-related transcription factor
           OS=Oryza sativa subsp. japonica GN=OSJNBb0011H15.7 PE=4
           SV=1
          Length = 937

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 328 DEDDGGKSGTGAHFHIAIRKSEFAEMAIPASTAPILGLAPFPHPCLLLLY 179
           D+D+GG  G+G H H      + AE   P   A     AP PH   L  Y
Sbjct: 240 DDDEGGSDGSGGHIHFPSDDDDDAEPPPPRPAA-----APAPHAATLYTY 284


>tr|Q0J3V2|Q0J3V2_ORYSJ Os08g0551200 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0551200 PE=4 SV=1
          Length = 1068

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 328 DEDDGGKSGTGAHFHIAIRKSEFAEMAIPASTAPILGLAPFPHPCLLLLY 179
           D+D+GG  G+G H H      + AE   P   A     AP PH   L  Y
Sbjct: 125 DDDEGGSDGSGGHIHFPSDDDDDAEPPPPRPAA-----APAPHAATLYTY 169