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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958548
Clone id TST39A01NGRL0002_E19
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_E19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCGAGAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATATCAGTAGGT
AGCAAGTAAGCAAGCACAAGCAGACTGTGCCGAACGTGATGGAGAAGATAGGCGAGATGC
TGCACATGGGGGGTCATCGCAAAGAAGAAGAGCACCCAGCTCACCCACCACCGCAATATG
CAGGAGACTATGATCCTGGCCATCACGGTGGTGGTGGCGAGCATCATGGTGGGGTGCCCC
CCCATGTGGCCGCGGCCTCCTATGATCAGCATGAGCACCCGGGACAGATGCATGCAGGAC
CACCCCCTGTTCATGCAGGTTACGGTGGGCTGGAGCAGCAGCAGCACCACCATGGTGGGG
CTCCACCTGCCCATGCCCATGAGCCGCCCCCACCCCACCATGAAGGCCCCATTGAGAAGA
TGAAACACAAGATGAAGGGTGGCGACGATGACAGCAGCTCCAGCAGCAGCGAAAGTGATG
GGGAAGGAGGGCGCAGGAAGAAGAAACATGGCCTCTTCTAAGCAACTTGCTCCTTGCTTG
TTTTTGACATGATCTTGTGTTTGTATGTAATGTCGCTTTTCATCTCGGCTATATGAGATG
GGTTCAAAATGTGGCTGCATATCGACCTACGTCATTTTCATTTCACTATATATGGTATTA
TGAATAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9XJ56
Definition sp|Q9XJ56|ECP44_DAUCA Phosphoprotein ECPP44 OS=Daucus carota
Align length 32
Score (bit) 31.6
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958548|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E19, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XJ56|ECP44_DAUCA Phosphoprotein ECPP44 OS=Daucus carota GN=...    32   4.0  
sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus mu...    31   5.2  
sp|Q8BQ33|CO042_MOUSE Uncharacterized protein C15orf42 homolog O...    31   6.8  
sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HS...    31   6.8  

>sp|Q9XJ56|ECP44_DAUCA Phosphoprotein ECPP44 OS=Daucus carota
           GN=ECPP44 PE=1 SV=1
          Length = 258

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +3

Query: 99  MEKIGEMLHMGGHRKEEEHPAHPPPQYAGDYD 194
           MEKI E L  GG + EEE  A PPP  A   D
Sbjct: 142 MEKIKEKLPGGGKKVEEETVAPPPPPAAAPVD 173


>sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus
           musculus GN=Arhgap23 PE=2 SV=2
          Length = 1483

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 214 VASIMVGCPPM-WPRPPMISMSTRDRCMQDHPL 309
           VA  +VG PP   PRPP + +  RD C    PL
Sbjct: 4   VAFCLVGIPPRPEPRPPQLPLGPRDGCSSGRPL 36


>sp|Q8BQ33|CO042_MOUSE Uncharacterized protein C15orf42 homolog OS=Mus
            musculus PE=2 SV=2
          Length = 1889

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 86   CAERDGEDRRDAAHGGSSQRRRAPSSPTT 172
            C   DG+ R+DAA  GS +   A SSP T
Sbjct: 1515 CCTADGKQRQDAAQQGSPRASEATSSPQT 1543


>sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HSV2
           PE=3 SV=1
          Length = 360

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 579 KATLHT-NTRSCQKQARSKLLRRGHVSSSCALLPHHFRCCWS 457
           K TLH  N  +   Q  S +  R H+ S+  L+P +FR  WS
Sbjct: 259 KNTLHVYNLTAADPQPESAMANRLHLLSAVPLMPTYFRSVWS 300
tr_hit_id Q941N0
Definition tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam
Align length 31
Score (bit) 41.2
E-value 0.06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958548|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_E19, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam ...    41   0.060
tr|A9XE62|A9XE62_SOYBN KS-type dehydrin SLTI629 OS=Glycine max P...    38   0.50 
tr|Q6PNN7|Q6PNN7_9FABA Cold-induced protein OS=Ammopiptanthus mo...    37   1.5  
tr|Q93XL8|Q93XL8_CITPA Dehydrin COR15 OS=Citrus paradisi PE=2 SV=1     34   7.3  
tr|Q8W267|Q8W267_CARPA Maturation-associated SRC1-like protein O...    34   7.3  
tr|Q6VTH3|Q6VTH3_9ROSI COR15 OS=Citrus clementina x Citrus retic...    34   9.5  
tr|B8LFE2|B8LFE2_SOYBN Low temperature inducible SLTI66 OS=Glyci...    34   9.5  
tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus...    34   9.6  

>tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam
           GN=DIP PE=4 SV=1
          Length = 113

 Score = 41.2 bits (95), Expect = 0.060
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGD 188
           ++ KIGE LH+GGH+KEEEH      +Y G+
Sbjct: 4   IINKIGETLHVGGHKKEEEHKGEVHGEYKGE 34


>tr|A9XE62|A9XE62_SOYBN KS-type dehydrin SLTI629 OS=Glycine max PE=4
           SV=1
          Length = 113

 Score = 38.1 bits (87), Expect = 0.50
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPA-HPPPQYAGDY 191
           ++ KIG  LH+GGH+KEEEH   H   +Y G++
Sbjct: 4   IIHKIGGTLHVGGHKKEEEHKGEHHAGEYKGEH 36


>tr|Q6PNN7|Q6PNN7_9FABA Cold-induced protein OS=Ammopiptanthus
           mongolicus GN=Cip PE=2 SV=1
          Length = 154

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGD 188
           ++ KIGE LH+GG++KE+EH       Y G+
Sbjct: 4   IINKIGETLHVGGNKKEDEHKVEGHGDYKGE 34


>tr|Q93XL8|Q93XL8_CITPA Dehydrin COR15 OS=Citrus paradisi PE=2 SV=1
          Length = 137

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGDY 191
           V+ KIGE LHMGG +KEE+   H    ++GD+
Sbjct: 4   VIHKIGEALHMGGGQKEED--KHKAEHHSGDH 33


>tr|Q8W267|Q8W267_CARPA Maturation-associated SRC1-like protein
           OS=Carica papaya GN=SRC PE=4 SV=1
          Length = 93

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGDY 191
           +M KI + LH+GG +KEEEH      ++ G++
Sbjct: 4   IMHKIEDALHIGGRKKEEEHKGEHHGEHKGEH 35


>tr|Q6VTH3|Q6VTH3_9ROSI COR15 OS=Citrus clementina x Citrus
           reticulata PE=2 SV=1
          Length = 138

 Score = 33.9 bits (76), Expect = 9.5
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGDY 191
           V+ KIGE LHMGG +KEE+   H    ++GD+
Sbjct: 4   VIHKIGEALHMGGGQKEED--KHKGEHHSGDH 33


>tr|B8LFE2|B8LFE2_SOYBN Low temperature inducible SLTI66 OS=Glycine
           max PE=4 SV=1
          Length = 90

 Score = 33.9 bits (76), Expect = 9.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 96  VMEKIGEMLHMGGHRKEEEHPAHPPPQYAGDY 191
           ++ KI E LH+GGH+K EEH   P  ++ G++
Sbjct: 4   IIHKIEETLHVGGHKK-EEHKGEPHGEHKGEH 34


>tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus
           GN=Ptgs1 PE=2 SV=1
          Length = 127

 Score = 33.9 bits (76), Expect = 9.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 474 FRCCWSCCHRRHPSSC 427
           F CC SCC RRHP SC
Sbjct: 43  FPCCCSCCCRRHPRSC 58