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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958568
Clone id TST39A01NGRL0002_F15
Library
Length 691
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_F15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAAAAGGGAAAGCGGAAATGTAGCAGCGGGAACTCCAGAGTTTGTTGGCCGAGTCGAGT
TTTCAATGCTGCAGGGGCCTGTAGGTTGGATTTTCTCATCACGTGTGAAGTCTACGGGCG
CAAAAGGGTCTGATGGGTAGAGCTGCTAAAGCTGGGTCGGCAGAGCAGATGGCGAGTTCT
TTATGTTAATCCTGCAATCTCTGCATTCACCAGGTTACTTGTTGCGAAGGGTGTTGCCCG
GCAGAAATCAGCATGGTTTTGAGGGTCAAATTTTGACAGACTGAGGGTTTACATACTCGA
GTAGGTTCACTTTTTCTGCCAATTAAGAGTTTTTAGCTACTAAGCGGTGAAGAATCCCTC
TACATTCCTGCATTAACATGTTAGAAGAACAGCTTAGCCAAGAAGGCAATGCACATTAGA
ACCCCTTATCTCTCATACCTTGAAGCTACCTGATCACGATGGCTGGCCCTTGGCATCATA
CCTTTTTAACAGAATTGGAAGATGTCCAGGCTTTGAATGAGTGCAACGAATTCAATAACC
AAGGGCCGAACTCTGGAGGTCAGGTTACTGAAGCTCGTATATCAGCAAGACGGCTGCATA
AGGCTGATCGGGAGAAGCTGAGACGGGATAAATTGAACGAGCAGTTTACAGAGCTTGCAA
ATGCACTTGATCCAGATAGACCCAAAAATGA
■■Homology search results ■■ -
sp_hit_id Q9LT23
Definition sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis thaliana
Align length 37
Score (bit) 57.8
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958568|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_F15, 5'
         (691 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsi...    58   5e-08
sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis...    55   4e-07
sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsi...    39   0.026
sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsi...    37   0.076
sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis...    37   0.076
sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis th...    35   0.29 
sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis...    35   0.49 
sp|Q9LTS4|BH041_ARATH Putative transcription factor bHLH041 OS=A...    32   3.2  
sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoid...    31   5.5  
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    31   5.5  
sp|B1V8K7|GLAA_STRGU Alpha-1,3-galactosidase A OS=Streptomyces g...    31   5.5  
sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase OS=Ralstoni...    30   9.4  

>sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis
           thaliana GN=BHLH121 PE=2 SV=1
          Length = 337

 Score = 57.8 bits (138), Expect = 5e-08
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +3

Query: 579 ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           +SAR+  KA REKLRR+KLNE F EL N LDP+RPKN
Sbjct: 56  VSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKN 92


>sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis
           thaliana GN=BHLH11 PE=2 SV=2
          Length = 286

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +3

Query: 534 NNQGPNSGG--QVTEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           ++ G N  G   V E +  A    KA+REKLRRDKL EQF EL NALDP+RPK+
Sbjct: 25  SSSGQNLRGAEMVVEVKKEAVCSQKAEREKLRRDKLKEQFLELGNALDPNRPKS 78


>sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis
           thaliana GN=BHLH115 PE=2 SV=1
          Length = 226

 Score = 38.9 bits (89), Expect = 0.026
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +3

Query: 600 KADREKLRRDKLNEQFTELANALDPDR 680
           KA REK RRD+LN++FTEL++ L+P R
Sbjct: 71  KACREKQRRDRLNDKFTELSSVLEPGR 97


>sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsis
           thaliana GN=BHLH104 PE=2 SV=1
          Length = 283

 Score = 37.4 bits (85), Expect = 0.076
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +3

Query: 600 KADREKLRRDKLNEQFTELANALDPDR 680
           KA RE+LRR+KLNE+F +L++ L+P R
Sbjct: 135 KACRERLRREKLNERFMDLSSVLEPGR 161


>sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis
           thaliana GN=BHLH34 PE=2 SV=1
          Length = 320

 Score = 37.4 bits (85), Expect = 0.076
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +3

Query: 600 KADREKLRRDKLNEQFTELANALDPDR 680
           KA REKLRR+KLN++F +L++ L+P R
Sbjct: 167 KACREKLRREKLNDKFMDLSSVLEPGR 193


>sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis
           thaliana GN=ILR3 PE=1 SV=1
          Length = 234

 Score = 35.4 bits (80), Expect = 0.29
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 600 KADREKLRRDKLNEQFTELANALDPDRP 683
           KA REK RRD+LN++F EL   L+P  P
Sbjct: 76  KACREKQRRDRLNDKFMELGAILEPGNP 103


>sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis
           thaliana GN=BHLH47 PE=2 SV=1
          Length = 240

 Score = 34.7 bits (78), Expect = 0.49
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +3

Query: 588 RRLHKADREKLRRDKLNEQFTELANALD 671
           +R++KA RE+L+R+ LNE F ELA+ L+
Sbjct: 28  KRINKAVRERLKREHLNELFIELADTLE 55


>sp|Q9LTS4|BH041_ARATH Putative transcription factor bHLH041
           OS=Arabidopsis thaliana GN=BHLH41 PE=4 SV=1
          Length = 466

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 543 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           G   GG+ T    SA +L     E+ RR+KLNE F  L + L P   K+
Sbjct: 272 GSGGGGRYTSGP-SATQLQHMISERKRREKLNESFQALRSLLPPGTKKD 319


>sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoideum
           GN=kbp PE=3 SV=1
          Length = 626

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 483 FLTELEDVQALNECNEFNNQGPNSGGQ----VTEARISARRLHKADREKLRRDKL-NEQF 647
           FL    D++ LN C+  NN   N+  +      +  +S+  L    +EK + DKL NE  
Sbjct: 279 FLHFFRDIENLNHCHRVNNNNKNNNNENDIDFVQGGLSSISLSDKQKEKEKEDKLFNENQ 338

Query: 648 TELANALD 671
            +    LD
Sbjct: 339 IKKEKMLD 346


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
           GN=ITGA3 PE=1 SV=2
          Length = 1066

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 213 LVNAEIAGLT*RTRHLLCRPSFSSSTHQTLLRP*TSHVMRKSNLQAPAALKT 58
           L+  E+ G+T  TR L  +   S+S+HQ  L+P T  +     LQA  +L T
Sbjct: 717 LIAFEVIGVTLHTRDLKAQLQLSTSSHQDNLQPMTLILQVDYTLQASLSLMT 768
tr_hit_id A9RVD9
Definition tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 66.2
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958568|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_F15, 5'
         (691 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome ...    65   3e-09
tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis...    65   3e-09
tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain conta...    65   4e-09
tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome...    65   5e-09
tr|A5B432|A5B432_VITVI Putative uncharacterized protein OS=Vitis...    63   2e-08
tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subs...    61   6e-08
tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis...    59   4e-07
tr|B8AGP0|B8AGP0_ORYSI Putative uncharacterized protein OS=Oryza...    58   5e-07
tr|A9SV25|A9SV25_PHYPA Predicted protein OS=Physcomitrella paten...    56   2e-06
tr|Q6XNP2|Q6XNP2_ORYSJ Putative transcription factor bHLH OS=Ory...    49   3e-04
tr|Q69V10|Q69V10_ORYSJ Os07g0628500 protein OS=Oryza sativa subs...    49   3e-04
tr|Q0E1J5|Q0E1J5_ORYSJ Os02g0433200 protein OS=Oryza sativa subs...    49   3e-04
tr|B8B4W8|B8B4W8_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A3BMG0|A3BMG0_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|B3SK43|B3SK43_ARALP At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK38|B3SK38_ARALP At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK34|B3SK34_ARALY At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK31|B3SK31_ARALY At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK30|B3SK30_ARALY At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK22|B3SK22_ARALP At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B3SK15|B3SK15_ARALP At4g36060-like protein (Fragment) OS=Arab...    49   4e-04
tr|B8A2P8|B8A2P8_MAIZE Putative uncharacterized protein OS=Zea m...    48   5e-04
tr|B6T4L8|B6T4L8_MAIZE Amelogenin like protein OS=Zea mays PE=2 ...    48   5e-04
tr|B7FJ19|B7FJ19_MEDTR Putative uncharacterized protein OS=Medic...    47   9e-04
tr|B3SK35|B3SK35_ARALP At4g36060-like protein (Fragment) OS=Arab...    47   0.001
tr|B3SK25|B3SK25_ARALY At4g36060-like protein (Fragment) OS=Arab...    47   0.001
tr|B3SK20|B3SK20_ARALP At4g36060-like protein (Fragment) OS=Arab...    47   0.001
tr|B3SK17|B3SK17_ARALP At4g36060-like protein (Fragment) OS=Arab...    47   0.001

>tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71136 PE=4 SV=1
          Length = 514

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/49 (65%), Positives = 36/49 (73%)
 Frame = +3

Query: 543 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           GP+  G       S R++HKADREKLRRD+LNEQF ELA  LDPDRPKN
Sbjct: 99  GPSENGDAA----SVRKVHKADREKLRRDRLNEQFGELAGVLDPDRPKN 143


>tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167103 PE=4 SV=1
          Length = 645

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 32/49 (65%), Positives = 35/49 (71%)
 Frame = +3

Query: 543 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           GP   G       S R++HKADREKLRRD+LNEQF ELA  LDPDRPKN
Sbjct: 195 GPTENGDTA----SVRKVHKADREKLRRDRLNEQFGELAGVLDPDRPKN 239


>tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036056001
           PE=4 SV=1
          Length = 329

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +3

Query: 579 ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           ++AR++ KADREKLRRD+LNEQF EL NALDPDRPKN
Sbjct: 43  VTARKVQKADREKLRRDRLNEQFIELGNALDPDRPKN 79


>tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018451 PE=4 SV=1
          Length = 378

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +3

Query: 579 ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           ++AR++ KADREKLRRD+LNEQF EL NALDPDRPKN
Sbjct: 92  VTARKVQKADREKLRRDRLNEQFIELGNALDPDRPKN 128


>tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 316

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 32/53 (60%), Positives = 39/53 (73%), Gaps = 4/53 (7%)
 Frame = +3

Query: 543 GPNSGGQVTEAR----ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           G + G Q  E +     SAR++ KADREK+RRDKLNEQF +L NALDPDRP+N
Sbjct: 11  GTHHGSQRAECKSQGSTSARKVQKADREKMRRDKLNEQFQDLGNALDPDRPRN 63


>tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036779001
           PE=4 SV=1
          Length = 292

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 10/58 (17%)
 Frame = +3

Query: 546 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL N LDPDRPKN
Sbjct: 27  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLDPDRPKN 84


>tr|A5B432|A5B432_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029413 PE=4 SV=1
          Length = 1086

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +3

Query: 579 ISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           + AR++ KADREKL+RD+LNEQF EL NALDPDRPKN
Sbjct: 560 VIARKVQKADREKLKRDRLNEQFIELRNALDPDRPKN 596


>tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0065F08.2 PE=2 SV=1
          Length = 343

 Score = 61.2 bits (147), Expect = 6e-08
 Identities = 26/41 (63%), Positives = 34/41 (82%)
 Frame = +3

Query: 567 TEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           T+  I+ R++ KADREK+RRD+LNEQF EL + LDPDRP+N
Sbjct: 33  TQGSIATRKVQKADREKMRRDRLNEQFQELGSTLDPDRPRN 73


>tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019798 PE=4 SV=1
          Length = 332

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 15/63 (23%)
 Frame = +3

Query: 546 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTELANAL-----DPDR 680
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL N L     DPDR
Sbjct: 26  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLESSNADPDR 85

Query: 681 PKN 689
           PKN
Sbjct: 86  PKN 88


>tr|B8AGP0|B8AGP0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07026 PE=4 SV=1
          Length = 343

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = +3

Query: 567 TEARISARRLHKADREKLRRDKLNEQFTELANALDPDRPKN 689
           T+  I+  ++ KADREK+RRD+LNEQF EL + LDPDRP+N
Sbjct: 33  TQGSIATCKVQKADREKMRRDRLNEQFQELGSTLDPDRPRN 73