DK958602
Clone id TST39A01NGRL0002_H01
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_H01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGGTCGCTTCCCATCTAGGTTTAGTGGAGGTGGTGGCAGCGGAGGTAGTTGGGGTGGTCG
TCCTGACCGGTATGGAGGTGGTCCACCCGCCAGTGGTGGGAGACATGCTGGTGATGAAAG
GTATGGTGGTGGTCGGGATCGTTATGGCTCAGGGAGGTATAATGATGGTGGTTACGGGCG
AGGTGGCCGAGGTGGTTTTGATCGAAGCGGTGATCGGTATGGTAGTGGGGGACCTACTCG
CTTTGACAGAGGGTTTAAGGATCGCCCTGCTCCTTATGGTGGAAGGCCAGGTGGCCGCTC
TTCTTATGATAACCGATACTGACAGCTTAGGATGTAAAAATTATGGTACTGCCACTGCAG
AGATATCTGGAGTACTGGTTTGTTTTCTCGGAACATGAATAGCTGCCAGTGAGACAAGTT
TGCTCTGGTTTATGTTTGACAGCATACGTTCTTTGTTTTTGTAAGGTCAGACTTCGCACC
TCAATTTCAAGTATCATGTAAGGCCAGTAGATTGATTGTGGAGGGTGGGATCCTTCCAAC
ACTGGATTGACATTTGGCAATGAAAACTTGTCTAAAAAAAAAAAAAAAAAAAAAAAACCC
AA
■■Homology search results ■■ -
sp_hit_id Q12734
Definition sp|Q12734|CSR2_YEAST Transcription factor CSR2 OS=Saccharomyces cerevisiae
Align length 66
Score (bit) 30.8
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958602|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_H01, 5'
(573 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q12734|CSR2_YEAST Transcription factor CSR2 OS=Saccharomyces ... 31 5.0
sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB... 30 6.5
sp|Q0T333|RCNA_SHIF8 Nickel/cobalt efflux system rcnA OS=Shigell... 30 6.5
sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A OS=Dicty... 30 6.5
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l... 30 6.5

>sp|Q12734|CSR2_YEAST Transcription factor CSR2 OS=Saccharomyces
cerevisiae GN=CSR2 PE=1 SV=1
Length = 1121

Score = 30.8 bits (68), Expect = 5.0
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -2

Query: 545 PVLEGSHPPQSIYWPYMILEIEVRSLT-LQKQRTYAVKHKPEQTCLTG-----SYSCSEK 384
P++ S P+S+Y+P + +R T L+ + T V +P + ++ SYSCS+
Sbjct: 481 PIVLASRIPESLYYPSARVSYSLRLATKLKDEHTQLVASRPRSSSISSPQKLRSYSCSD- 539

Query: 383 TNQYSR 366
+ +YS+
Sbjct: 540 SYEYSQ 545


>sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein
DDB0167791 OS=Dictyostelium discoideum GN=DDB_G0274557
PE=4 SV=1
Length = 233

Score = 30.4 bits (67), Expect = 6.5
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -2

Query: 311 YHKKSGHLAFHHKEQGDP*TLCQSE*VPHYHTDHRFDQNHLGHLARNHHHY 159
+H H HH P PH+H H +H H +HHH+
Sbjct: 83 HHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHH 133


>sp|Q0T333|RCNA_SHIF8 Nickel/cobalt efflux system rcnA OS=Shigella
flexneri serotype 5b (strain 8401) GN=rcnA PE=2 SV=1
Length = 282

Score = 30.4 bits (67), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2

Query: 227 HYHTDHRFDQNHLGHLARNHHHY 159
H+H DH Q+H H + HHH+
Sbjct: 129 HHHHDHEHHQDHEHHHDQGHHHH 151


>sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A
OS=Dictyostelium discoideum GN=pabp1A PE=3 SV=1
Length = 814

Score = 30.4 bits (67), Expect = 6.5
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Frame = -2

Query: 227 HYHTDHRFDQNHLGHLARNHHHYTSLSXXXXXXXXXXXXXXXXXHWRVDHLHTG--QDDH 54
H H H Q H G++ +HHH+ V +LH Q H
Sbjct: 62 HPHHVHPHHQQHPGYVPSHHHHHQQHHHHHPHHVG------------VPNLHHSIHQQQH 109

Query: 53 PNYLRCHHLH 24
P Y+ HH H
Sbjct: 110 PGYVPSHHHH 119


>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium
lophurae PE=4 SV=1
Length = 351

Score = 30.4 bits (67), Expect = 6.5
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -2

Query: 311 YHKKSGHLAFHHKEQGDP*TLCQSE*VPHYHTDHRFDQNHLGHLARNHHHY 159
+H GH HH H+H H +H GH +HHH+
Sbjct: 218 HHHHHGHHHHHH----------------HHHGHHHHHHHHHGHHHHHHHHH 252



Score = 30.0 bits (66), Expect = 8.5
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -2

Query: 311 YHKKSGHLAFHHKEQGDP*TLCQSE*VPHYHTDHRFDQNHLGHLARNHHHY 159
+H H A HH H+H H +H GH +HHH+
Sbjct: 195 HHHHHHHHAPHHHHH-------------HHHAPHHHHHHHHGHHHHHHHHH 232



Score = 30.0 bits (66), Expect = 8.5
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = -2

Query: 311 YHKKSGHLAFHHKEQGDP*TLCQSE*VPHYHTDHRFD---QNHLGHLARNHHHY 159
+H GH HH G H+H H D +H H A +HHH+
Sbjct: 228 HHHHHGHHHHHHHHHGH-----------HHHHHHHHDAHHHHHHHHDAHHHHHH 270


tr_hit_id B7IL04
Definition tr|B7IL04|B7IL04_BACCE VrrB protein OS=Bacillus cereus G9842
Align length 53
Score (bit) 35.4
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958602|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_H01, 5'
(573 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7IL04|B7IL04_BACCE VrrB protein OS=Bacillus cereus G9842 GN=... 35 2.3
tr|A7UTX5|A7UTX5_ANOGA AGAP005884-PA OS=Anopheles gambiae GN=AGA... 35 3.9

>tr|B7IL04|B7IL04_BACCE VrrB protein OS=Bacillus cereus G9842
GN=BCG9842_B0387 PE=4 SV=1
Length = 341

Score = 35.4 bits (80), Expect = 2.3
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -2

Query: 314 GYHKKSGHLAFH--HKEQGDP*TLCQSE*VPHYHTDHRFDQNHLGHLARNHHH 162
G+H GH H H QG H H H DQ H GH + HHH
Sbjct: 158 GHHHHQGHHGHHGHHHHQGH-----------HGHHGHHHDQGHHGHQQQVHHH 199


>tr|A7UTX5|A7UTX5_ANOGA AGAP005884-PA OS=Anopheles gambiae
GN=AGAP005884 PE=4 SV=1
Length = 663

Score = 34.7 bits (78), Expect = 3.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -2

Query: 326 AVSIGYHKKSGHLAFHHKEQGDP*TLCQSE*VPHYHTDHRFDQNHLGHLARNHHHYTSL 150
A S+G+H H HH++Q + PH H H Q+H HHH SL
Sbjct: 115 ASSVGHHHPMHHQPHHHQQQQQHAGMGTPHHHPHPHQHHHASQHH-------HHHAASL 166