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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958616
Clone id TST39A01NGRL0002_H15
Library
Length 694
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_H15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCATCTCCTCTCTCGGCTCTTGGTGCCATGGCAACTGAGGTTAGCGGGAGCTTTGAGCAG
AAAGACCTCATAGAGAGAGTCAAGAGCTTGGAGAGATCAGTGCAAGAAATGCAAAGAGAC
CAAAAGTCAAGAGAGGAGTGGAGCTCCCAGCAGCTTCACAGCCTCGAGAAGCAACTCTCC
CTCTCCGCACTCGCCTCCTCATTGTTACCATCCTCCTCCCTCCCCTCCTCGCCGGGTGGT
AGCATGGCGGTCCGCAGCCCCCGCTTGGCCTACAGCTCCTCCTTCAAGAAGCCTGATGTG
CCCACTACATTCCAAATGCCCCTACATTACCCCAAATACACCAAGGACGACTATGACAGC
ATGCCAGAGTGGAAGCTCGACCGCCTCCTCGAGGAGTATGGCTTGCCCGTTCTTGGAACT
CTTCGCGAGAAGCGACAGTATGCGGTGGGGGTCTTCCTGTGGGGCAAATCCGAGCGTTAG
ATCGGCATCGAATTGCTGGCTCACACCATTTACAGAGTAGATCATGCTGTTGTGTCTTTT
TCTTTGTAATTTGTGTTTACATAGCTAATTGTGGTGCATTACACATTAATTAGTGCAGAG
GTTGAAGTAAAGAATTATATGTCTATTAGAGTCCTTGTGTCCTGCAAATAGATGGTTCAA
GCATGTAGATGCAGAATGTCAGAGATAAGAGTCA
■■Homology search results ■■ -
sp_hit_id Q5XIR6
Definition sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus norvegicus
Align length 34
Score (bit) 31.2
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958616|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_H15, 5'
         (694 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus norv...    31   5.5  
sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   5.5  
sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa ...    31   7.2  
sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus muscu...    31   7.2  
sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus la...    31   7.2  
sp|Q12981|SEC20_HUMAN Vesicle transport protein SEC20 OS=Homo sa...    30   9.5  
sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo s...    30   9.5  

>sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus
           norvegicus GN=Iqcd PE=2 SV=2
          Length = 457

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = +1

Query: 67  LIERVKSLERSVQEMQRDQKSREEWSSQQLHSLE 168
           L+E+   L+R  +E+++ +++ E+W  ++L S+E
Sbjct: 99  LVEKASILQRKQKELEKGEEAEEDWDQERLLSIE 132


>sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Thermotoga maritima
           GN=gatB PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 283 FKKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLP 408
           F +PD+P    +   Y +  K +   +P+ K +R + EYGLP
Sbjct: 277 FPEPDIPPVV-LSDEYLEEVKKELPELPDEKAERFMREYGLP 317


>sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa
            GN=wc-1 PE=2 SV=2
          Length = 1167

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 1    ASPLSALGAMATEVSGSFEQKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 174
            AS ++ALG  AT  SG    + L   ++    + Q MQR  + ++    QQ H  + Q
Sbjct: 1057 ASTVNALGPPATGPSGGSPAQHLPPHLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQ 1114


>sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus musculus
           GN=Tbc1d10b PE=1 SV=1
          Length = 537

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 58  QKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 174
           QK   +R K  +R  +E +R +K R++W  +Q    +KQ
Sbjct: 454 QKQEKDREKERQRQEKERERQEKERQKWEKEQEKEQQKQ 492


>sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus
           laevis GN=kif15-A PE=1 SV=1
          Length = 1388

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 55  EQKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSL 165
           EQ+DLI ++KSLE+  QE     KS+E+    ++H L
Sbjct: 777 EQQDLIAQIKSLEKQKQE----NKSQEDVLKSEVHDL 809


>sp|Q12981|SEC20_HUMAN Vesicle transport protein SEC20 OS=Homo
           sapiens GN=BNIP1 PE=1 SV=3
          Length = 228

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 19/58 (32%), Positives = 36/58 (62%)
 Frame = +1

Query: 1   ASPLSALGAMATEVSGSFEQKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 174
           + PLSAL  + T+V   F+Q  L  R++ LE+  +E  +D++S ++   Q++ + +KQ
Sbjct: 34  SGPLSALTELNTKVKEKFQQ--LRHRIQDLEQLAKE--QDKESEKQLLLQEVENHKKQ 87


>sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo
           sapiens GN=ARHGAP25 PE=1 SV=1
          Length = 638

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 11/34 (32%), Positives = 26/34 (76%)
 Frame = +1

Query: 73  ERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 174
           E + SL+R VQE++++ +++++   +Q+ +LEK+
Sbjct: 541 EEIDSLQRMVQELRKEIETQKQMYEEQIKNLEKE 574
tr_hit_id Q1G3G9
Definition tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 59
Score (bit) 91.7
E-value 4.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958616|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_H15, 5'
         (694 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi...    92   4e-17
tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen...    92   4e-17
tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m...    91   7e-17
tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08...    90   1e-16
tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza...    90   1e-16
tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom...    85   4e-15
tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom...    85   5e-15
tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m...    84   7e-15
tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m...    84   7e-15
tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul...    83   1e-14
tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00...    83   2e-14
tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs...    83   2e-14
tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who...    83   2e-14
tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza...    83   2e-14
tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2...    82   4e-14
tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    79   3e-13
tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m...    79   4e-13
tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m...    79   4e-13
tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m...    79   4e-13
tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom...    77   8e-13
tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m...    77   1e-12
tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m...    76   2e-12
tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562...    75   5e-12
tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2...    72   3e-11
tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=...    72   4e-11
tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556...    72   4e-11
tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi...    70   2e-10
tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis...    59   3e-07
tr|Q9FI85|Q9FI85_ARATH Gb|AAF04428.1 (Putative uncharacterized p...    55   3e-06

>tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 101

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = +1

Query: 286 KKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           K  +  ++FQ+PLHYPKYTK DY+ MPEW+LDRLL EYGLPV+G   EKR++A+G FLW
Sbjct: 37  KPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95


>tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 102

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = +1

Query: 286 KKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           K  +  ++FQ+PLHYPKYTK DY+ MPEW+LDRLL EYGLPV+G   EKR++A+G FLW
Sbjct: 37  KPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95


>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 87

 Score = 90.9 bits (224), Expect = 7e-17
 Identities = 35/52 (67%), Positives = 47/52 (90%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 465
           FQMPLHYP+++++DY++MPEW+LDRLL EYGLPV GT+ +KR +A+G FLWG
Sbjct: 30  FQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFAIGTFLWG 81


>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38
           (Putative uncharacterized protein) (Putative
           uncharacterized protein P0443E05.1) OS=Oryza sativa
           subsp. japonica GN=P0483F08.38 PE=4 SV=1
          Length = 79

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 44/52 (84%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 465
           FQMPLHYP+Y K+DY+ MPEW+LDRLL EYGLPV G L+ KR +A+G FLWG
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLWG 71


>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00937 PE=4 SV=1
          Length = 79

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 44/52 (84%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 465
           FQMPLHYP+Y K+DY+ MPEW+LDRLL EYGLPV G L+ KR +A+G FLWG
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLWG 71


>tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002465001
           PE=4 SV=1
          Length = 91

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           FQMPLHYP+Y K DY++MPEWKLD LL +YGLPV G L +KR++A+G FLW
Sbjct: 36  FQMPLHYPRYRKTDYETMPEWKLDCLLTQYGLPVTGDLTQKRKFAMGAFLW 86


>tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026984001
           PE=4 SV=1
          Length = 80

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 34/51 (66%), Positives = 44/51 (86%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           FQMPLHYP+YT+ DY++MPEWK+D LL EYGLPV G + +KR++A+G FLW
Sbjct: 28  FQMPLHYPRYTQADYETMPEWKIDCLLAEYGLPVTGGVEQKRKFAMGAFLW 78


>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 99

 Score = 84.3 bits (207), Expect = 7e-15
 Identities = 34/53 (64%), Positives = 45/53 (84%)
 Frame = +1

Query: 304 TTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           ++F+MPLHYP+Y K DY++MPEW++D LL EYGLPV G LR KR++A+G FLW
Sbjct: 43  SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFAMGAFLW 95


>tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 104

 Score = 84.3 bits (207), Expect = 7e-15
 Identities = 40/71 (56%), Positives = 48/71 (67%)
 Frame = +1

Query: 250 VRSPRLAYSSSFKKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLRE 429
           V  PR    SS+       TF MPLHYP+Y K DY+SMPEW++D LL EYGLPV G L  
Sbjct: 37  VEGPRTMNCSSY-------TFHMPLHYPRYKKADYESMPEWRVDCLLREYGLPVDGELDS 89

Query: 430 KRQYAVGVFLW 462
           KR++A+G FLW
Sbjct: 90  KRKFAMGAFLW 100


>tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=4 SV=1
          Length = 92

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 33/51 (64%), Positives = 43/51 (84%)
 Frame = +1

Query: 310 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 462
           FQMPLHYP+Y K DY++MPEW+LD LL+EYGLP +G   +KR++A+G FLW
Sbjct: 37  FQMPLHYPRYKKCDYETMPEWRLDCLLKEYGLPAIGDANQKRKFAMGAFLW 87