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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958634
Clone id TST39A01NGRL0002_I09
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_I09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGCTTCTAATAGCTGCTCACAGTCAGCTGCTCTTTGTAGAGGTGAATTTCAAAAAGAGG
AACTTTCTCCTCAAAAGGACGGTATAATTGGTTTTGGTGATCAAAAGCATCTTGAGAGAG
CGTTCATATCATGTAGTGGTGGCACTGGAAAGCGCAGAAGGTCCTCAGCAGTAAGAGACT
TTCCAATGCTGAGTGGTAGGCTTCACATTTCTTCAGTGAAAAAAGTTATCATCAAATCTA
AAGGTAAGAAGTTAAATGTTGTGAGGGATGTGGTATTGGAAGACTCTGCTCGAGCTTGTT
CTCCATCTGATCTCCTATTGGCAAATGAAATTTCAAGCTTCTCAAACCCGATAATTGTGC
CTGCTGATCATGTTTGCCCCGAACTAGAGGATCATAGCAAGCCACATCTTGGAATGATTG
ATGGTTCTTTGGATCTTGTCATGTCTGATCCTGAAACAATTTGTGAGGTTGCTACCAAGA
TAGTAGTAGATGAAGGAAACTCTTCTGCTGAACTAACTCAAGTTGGCTTTGGAAAGGTTG
TTGAGAATTGCTTAACTTTATCCAAAGGATTTGGTGGGAATGA
■■Homology search results ■■ -
sp_hit_id Q5M556
Definition sp|Q5M556|AROB_STRT2 3-dehydroquinate synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Align length 60
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958634|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_I09, 5'
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5M556|AROB_STRT2 3-dehydroquinate synthase OS=Streptococcus ...    32   2.3  
sp|Q5M0M0|AROB_STRT1 3-dehydroquinate synthase OS=Streptococcus ...    32   2.3  
sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein ...    32   2.3  
sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin-protein ligase TOM1-like OS=Ne...    31   5.1  
sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus ...    30   8.7  

>sp|Q5M556|AROB_STRT2 3-dehydroquinate synthase OS=Streptococcus
           thermophilus (strain ATCC BAA-250 / LMG 18311) GN=aroB
           PE=3 SV=1
          Length = 355

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 408 LGMIDGSLDLVMSDPETI----CEVATKIVVDEGNSSAELTQVGFGKVVENCLTLSKGFG 575
           L  IDGS+  ++ + ETI    C V  KIVV++         + FG  + + +  + G+G
Sbjct: 200 LDNIDGSVHSILENSETIIYRSCNVKRKIVVEDEFEGGVRMYLNFGHTIGHAVEQTAGYG 259


>sp|Q5M0M0|AROB_STRT1 3-dehydroquinate synthase OS=Streptococcus
           thermophilus (strain CNRZ 1066) GN=aroB PE=3 SV=1
          Length = 355

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 408 LGMIDGSLDLVMSDPETI----CEVATKIVVDEGNSSAELTQVGFGKVVENCLTLSKGFG 575
           L  IDGS+  ++ + ETI    C V  KIVV++         + FG  + + +  + G+G
Sbjct: 200 LDNIDGSVHSILENSETIIYRSCNVKRKIVVEDEFEGGVRMYLNFGHTIGHAVEQTAGYG 259


>sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein
           OS=Saccharomyces cerevisiae GN=IXR1 PE=1 SV=2
          Length = 597

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = -2

Query: 558 KLSNSQQPFQSQLELVQQKSFLHLLLSW*QPHKLFQDQT*QDPKNHQSFQDVACYDPLVR 379
           +L++ QQ  Q QL+L QQ+  L       Q H+L Q Q  Q   +H   Q      P+V+
Sbjct: 283 QLTHHQQQMQQQLQLQQQQQ-LQQQQQLQQQHQLQQQQQLQQQHHHLQQQQQQQQHPVVK 341

Query: 378 GKHDQQAQLSGLRSLK 331
                Q+++   + LK
Sbjct: 342 KLSSTQSRIERRKQLK 357


>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin-protein ligase TOM1-like
            OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3
          Length = 4026

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 384  LEDHSKPHLGMIDGSLDLVMSDPETICEVATKIVVDEGNSSAELTQVGFGKVVENCL 554
            +E+ +K +  +ID SL+++ S PE + EVA  I      +  E  +V  G+++ N L
Sbjct: 1649 VEERAKLYDTLIDRSLEVISSHPEAVFEVADLIQNTILKTDNEDRRVEVGEILANAL 1705


>sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus
           mutans GN=aroB PE=3 SV=1
          Length = 355

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 417 IDGSLDLVMSDPETI----CEVATKIVVDEGNSSAELTQVGFGKVVENCLTLSKGFG 575
           +DGS D ++ + E I    C V  +IVV++   +     + FG  + + +  + G+G
Sbjct: 203 LDGSTDSILENAEKIIYHSCNVKRQIVVEDELDNGVRLYLNFGHTIGHAIEATAGYG 259
tr_hit_id Q2LZV0
Definition tr|Q2LZV0|Q2LZV0_DROPS GA16935 OS=Drosophila pseudoobscura pseudoobscura
Align length 96
Score (bit) 34.3
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958634|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_I09, 5'
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2LZV0|Q2LZV0_DROPS GA16935 OS=Drosophila pseudoobscura pseud...    34   5.2  
tr|B2UD71|B2UD71_RALPJ Putative uncharacterized protein OS=Ralst...    34   6.8  
tr|Q38EX7|Q38EX7_9TRYP Farnesyl pyrophosphate synthetase, putati...    34   6.8  
tr|A4HWK0|A4HWK0_LEIIN Farnesyl synthetase, putative OS=Leishman...    34   6.8  
tr|A4H875|A4H875_LEIBR Farnesyl synthetase, putative OS=Leishman...    34   6.8  
tr|B5DHQ9|B5DHQ9_DROPS GA25185 OS=Drosophila pseudoobscura pseud...    34   6.9  
tr|Q22R33|Q22R33_TETTH PX domain containing protein OS=Tetrahyme...    33   9.0  

>tr|Q2LZV0|Q2LZV0_DROPS GA16935 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA16935 PE=4 SV=2
          Length = 1717

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = -2

Query: 543 QQPFQSQLELVQQKSFLHLLLSW*QPHKLFQDQT*QDPKNHQSFQDVACYDPLVRGKHDQ 364
           QQ    Q+E    K   HL+++   P +  Q Q    P++HQ  Q      P  +    Q
Sbjct: 634 QQQLPQQIEKQATKVAAHLVVATVAPQQQQQQQQ-AAPQHHQQQQTSPVVMPQQQQPQQQ 692

Query: 363 QAQLSGLRSLKFHLPIGDQMENKLEQSLPIPHPSQH 256
           Q QL   +   +       M+++ +Q  P PH  QH
Sbjct: 693 QQQLPQQQQTSYQ-----DMQHQAQQHQPQPHQHQH 723


>tr|B2UD71|B2UD71_RALPJ Putative uncharacterized protein
           OS=Ralstonia pickettii (strain 12J) GN=Rpic_0085 PE=3
           SV=1
          Length = 546

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +3

Query: 270 VVLEDSARACSPSDLLLANEISSFSNPIIVPADHVCPELEDHSKPHLGMIDGSLDLVMSD 449
           V L D + A + +    +    S    ++ PA+  CP L+      +   DGS  +V  D
Sbjct: 199 VTLTDLSTAVASTSGSSSGSAGSTVGTVLAPANSACPALKSGDHRLIKFSDGSAQVVTID 258

Query: 450 PETICEVATKIVVDEGNSSAELTQ 521
                  A K+ V  G SS +LTQ
Sbjct: 259 -------AAKLTVAVGGSSYQLTQ 275


>tr|Q38EX7|Q38EX7_9TRYP Farnesyl pyrophosphate synthetase, putative
           OS=Trypanosoma brucei GN=Tb09.160.4300 PE=3 SV=1
          Length = 359

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
 Frame = +3

Query: 276 LEDSARACSPSDLLLANE---ISSFSNPIIVPADHVCPELEDHSKPHLGMIDGSLDLVMS 446
           + D  RA    D LLA     I+S   P IV    +   LED ++  +  ++G  DL   
Sbjct: 145 VHDVKRAVLAGDFLLARASLWIASLCVPRIVVL--MTTALEDLTRGEMMQMEGCFDLERY 202

Query: 447 DPETICE---------VATKIVVDEGNSSAELTQVGFGK-------VVENCLTLS 563
           + +T C+          AT ++ D  NS+ E+    +G+       +V++CL ++
Sbjct: 203 EEKTYCKTGSLIANSLAATAVLADPSNSAHEVAAGEYGRRLGIAFQIVDDCLDIT 257


>tr|A4HWK0|A4HWK0_LEIIN Farnesyl synthetase, putative OS=Leishmania
           infantum GN=LinJ15.1070 PE=3 SV=1
          Length = 359

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
 Frame = +3

Query: 282 DSARACSPSDLLLANE---ISSFSNPIIVPADHVCPELEDHSKPHLGMIDGSLDLVMSDP 452
           D+ RA    D +LA     I++   P IV    +   LE+ +   L  +DG  D+   + 
Sbjct: 147 DAKRAVLAGDYMLARASFYIATLQVPRIVIL--MTTALEELTAGELIQMDGCFDIPRYEQ 204

Query: 453 ETICEVA---------TKIVVDEGNSSAELTQVGFGK-------VVENCLTLS 563
           ++ C+ A         T ++ D GN + E T   FGK       ++++CL ++
Sbjct: 205 KSFCKTASLIANSLASTAVLADPGNEALEQTAFDFGKHLGIAFQILDDCLDIT 257


>tr|A4H875|A4H875_LEIBR Farnesyl synthetase, putative OS=Leishmania
           braziliensis GN=LbrM15_V2.1060 PE=3 SV=1
          Length = 359

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
 Frame = +3

Query: 282 DSARACSPSDLLLANE---ISSFSNPIIVPADHVCPELEDHSKPHLGMIDGSLDLVMSDP 452
           D+ RA    D +LA     I++   P IV    +   LE+     L  +DG  D+   + 
Sbjct: 147 DTKRAVLAGDYILARASFYIATLQVPRIVIL--MTTALEELMSGELLQMDGCFDIPRYEQ 204

Query: 453 ETICEVA---------TKIVVDEGNSSAELTQVGFGK-------VVENCLTLS 563
           ++ C+ A         T ++VD GN + E T   FG+       ++++CL ++
Sbjct: 205 KSFCKTASLISNSLASTAVLVDPGNEALEQTAFDFGRHLGIAFQILDDCLDIT 257


>tr|B5DHQ9|B5DHQ9_DROPS GA25185 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA25185 PE=4 SV=1
          Length = 4986

 Score = 33.9 bits (76), Expect = 6.9
 Identities = 28/103 (27%), Positives = 44/103 (42%)
 Frame = -2

Query: 558  KLSNSQQPFQSQLELVQQKSFLHLLLSW*QPHKLFQDQT*QDPKNHQSFQDVACYDPLVR 379
            K++ + Q  Q Q ++ Q   F+H  +   Q H+  Q Q  Q     Q  Q    +     
Sbjct: 3193 KMTAAHQQHQHQQQVHQ---FMHQQMLQRQQHQQQQQQQQQQQHLQQQQQHGHPHGQQQS 3249

Query: 378  GKHDQQAQLSGLRSLKFHLPIGDQMENKLEQSLPIPHPSQHLT 250
             +H QQ+QL G +  +  L    Q + + +Q  P   P Q LT
Sbjct: 3250 QQHQQQSQLHGQQQHQLQLTPAQQHQLQQQQQHPHQAPQQQLT 3292


>tr|Q22R33|Q22R33_TETTH PX domain containing protein OS=Tetrahymena
           thermophila SB210 GN=TTHERM_00024480 PE=4 SV=1
          Length = 873

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 26/99 (26%), Positives = 42/99 (42%)
 Frame = -2

Query: 582 HSHQILWIKLSNSQQPFQSQLELVQQKSFLHLLLSW*QPHKLFQDQT*QDPKNHQSFQDV 403
           H H    I  S  QQ  QS L+  QQ+          Q ++  QD   Q P+  Q  Q  
Sbjct: 210 HQHPPQQINTSEQQQQHQSHLQQQQQQP---------QQYQQNQDIKQQQPQQVQPIQ-- 258

Query: 402 ACYDPLVRGKHDQQAQLSGLRSLKFHLPIGDQMENKLEQ 286
             Y P V+    QQ Q + ++  ++  P+G    + +++
Sbjct: 259 --YAPQVQQNQVQQNQQAQVQQQQYQYPVGRSQSDVIQE 295