DK958641 |
Clone id |
TST39A01NGRL0002_I16 |
Library |
TST39 |
Length |
620 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_I16. 5' end sequence. |
Accession |
DK958641 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2957Contig1 |
Sequence |
GTCTTGGCATTTCAATCTCTTGTTGCTTTGGTGATTTTTCTTGGGCGCGTACACAGAAGC TTCTGGACAAGCTTCGAGTCAAAGATACACATCTCATCTTTTCTGTTCGCAGTGAGTTGC GTGCGATGGCGGAGGACCTGGAGAAGCAAGTTACTGACGCTATCTTGGACGACAACCTTG ACTTGGCTCTGGACCTCTACACGAAGGTGATAGCGGCAGATCCTAGTAAGGCTGCCTCTC TTCTTCCAAGCAGAGCGCAGGTGCACATCAAACTGCAGAATTTCACAGATGCTATTGCTG ATGCAAATAAGGCTATAGAGCTGAATGCTTCTTCGGCGAAGGCCTTCCGCTGCAAAGGAG TTGCTTGCTATAAACTTGAGGAGTATGAAACTGCAAAAGCAGCATTCACCGCAGGGGCAA ATTTGGAACCATCCAATTCTGACTTTCAGAACTGGATAATGAAATGTGATAATGCTATAG CTGATGAATCCCAGTCAGAGGAGGGGTTATCCGATAGCAGAAATGAAGAACATTTAAATG AGCACAAAACAGTGTTTCCTGCCAGTTCACCCTCATCTCCCCCGCAACCTAAGCCTGCAC AAAATTTCAGGCATGCGTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q55ED0 |
Definition |
sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum |
Align length |
80 |
Score (bit) |
66.6 |
E-value |
1.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958641|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_I16, 5' (620 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium dis... 67 1e-10 sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS... 66 1e-10 sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS... 61 4e-09 sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=... 60 9e-09 sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=... 59 2e-08 sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=R... 58 5e-08 sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Ra... 57 8e-08 sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=... 55 4e-07 sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repe... 54 7e-07 sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repe... 54 7e-07 sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat... 54 8e-07 sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=ST... 53 1e-06 sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=... 53 1e-06 sp|Q8ILC1|STI1L_PLAF7 STI1-like protein OS=Plasmodium falciparum... 52 2e-06 sp|Q84XU2|PPP5_ARATH Serine/threonine protein phosphatase 5 OS=A... 51 4e-06 sp|P53043|PPT1_YEAST Serine/threonine-protein phosphatase T OS=S... 51 6e-06 sp|Q9TRY0|FKBP4_BOVIN FK506-binding protein 4 OS=Bos taurus GN=F... 50 7e-06 sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repea... 50 1e-05 sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=... 50 1e-05 sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicu... 49 3e-05 sp|Q02790|FKBP4_HUMAN FK506-binding protein 4 OS=Homo sapiens GN... 48 4e-05 sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus G... 48 5e-05 sp|Q9Y2Z0|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS... 48 5e-05 sp|P27124|FKBP4_RABIT FK506-binding protein 4 OS=Oryctolagus cun... 47 6e-05 sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium dis... 47 8e-05 sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus G... 47 1e-04 sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens G... 47 1e-04 sp|P30416|FKBP4_MOUSE FK506-binding protein 4 OS=Mus musculus GN... 47 1e-04 sp|Q9QVC8|FKBP4_RAT FK506-binding protein 4 (Fragments) OS=Rattu... 46 1e-04 sp|Q93YR3|F10AL_ARATH FAM10 family protein At4g22670 OS=Arabidop... 46 1e-04
>sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1 Length = 387
Score = 66.6 bits (161), Expect = 1e-10 Identities = 30/80 (37%), Positives = 50/80 (62%) Frame = +3
Query: 225 SKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKLEEYETAKAA 404 S A R+Q H KL N +A++D N +I+L+++++K + KG C++LEE++TA Sbjct: 31 SNNAEAFFKRSQCHSKLSNLKEALSDINTSIKLDSNNSKYYLKKGQLCFELEEFDTALKT 90
Query: 405 FTAGANLEPSNSDFQNWIMK 464 F G +++ NS F+ WI K Sbjct: 91 FEKGQSIDSENSSFKTWIRK 110
>sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1 Length = 338
Score = 66.2 bits (160), Expect = 1e-10 Identities = 39/112 (34%), Positives = 57/112 (50%) Frame = +3
Query: 201 TKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKLE 380 TK + P A RA HI L N++DA+ADA K++ELN +S+ A KG+ Y + Sbjct: 36 TKALEQKPDDAPYYC-QRAYCHILLGNYSDAVADAKKSLELNPNSSTALLRKGICEYHEK 94
Query: 381 EYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLSDSRNEEHL 536 Y A FT G L +++D WI +C A + SQ E S ++ + Sbjct: 95 NYAAALETFTEGQKLNSADADLTAWIKRCQEA-QNGSQPEVSASQRTHQSKI 145
>sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3 Length = 336
Score = 61.2 bits (147), Expect = 4e-09 Identities = 35/104 (33%), Positives = 54/104 (51%) Frame = +3
Query: 201 TKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKLE 380 TK + +P A RA HI L + D IAD K++ELN ++ A KG+ Y + Sbjct: 35 TKALEQNPDDAQYYC-QRAYCHILLGKYRDGIADVKKSLELNPNNCTALLRKGICEYHEK 93
Query: 381 EYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLS 512 +Y +A F G L+ ++++F WI +C I + S+SE S Sbjct: 94 DYASALETFAEGQKLDSTDTNFDTWIKRCQE-IQNGSESEVSAS 136
>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1 Length = 665
Score = 60.1 bits (144), Expect = 9e-09 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 1/101 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPS-RAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYK 374 YT+ IAAD + A LLP+ RA ++K+Q + +A D +A+ L+AS +KAF +G A Sbjct: 306 YTRGIAADGTNA--LLPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVA 363
Query: 375 LEEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQS 497 L + + A F A LEP N N + K N +A++ QS Sbjct: 364 LGKLKEAMQDFEAVLKLEPGNKQAINELTKIRNELAEKEQS 404
Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YT+ + +DP L +RA +++ F+ A +D N A+ L+ + KA+ +G A + L Sbjct: 156 YTRGMHSDPFNPV-LPTNRASAFYRMKKFSVAESDCNLALALDKNYTKAYARRGAARFAL 214
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLSDS-RNEEHLNEHKTV 554 + ++ AK + L+ +N + +N + K + A++ ES ++ ++ R+E NE + + Sbjct: 215 KNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEFEEAVRSELTENERRCI 274
>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2 Length = 665
Score = 58.9 bits (141), Expect = 2e-08 Identities = 35/100 (35%), Positives = 53/100 (53%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YTK + ADP L +RA + +L+ F A +D N A+ LN S KA+ +G A + L Sbjct: 156 YTKGMDADPYNPV-LPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFAL 214
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQS 497 ++ E AK + LEP+N + N + K A+A + S Sbjct: 215 QKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENS 254
Score = 52.0 bits (123), Expect = 2e-06 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPS-RAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYK 374 YT+ IAAD + A LLP+ RA ++K+Q + +A D +AI L+ S +KAF +G A Sbjct: 305 YTRGIAADGANA--LLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTF 362
Query: 375 LEEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLSDSRNEEHL 536 L + AK F LEP N + K + ++ ++ DS +++ Sbjct: 363 LGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNV 416
>sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1 Length = 336
Score = 57.8 bits (138), Expect = 5e-08 Identities = 34/104 (32%), Positives = 54/104 (51%) Frame = +3
Query: 201 TKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKLE 380 TK + +P A RA HI L + D IAD K++ELN +++ A KG+ Y + Sbjct: 35 TKALEQNPDDAQYYC-QRAYCHILLGKYCDGIADVKKSLELNPNNSTALLRKGICEYYEK 93
Query: 381 EYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLS 512 +Y +A F G L+ ++++F WI +C I + S+ E S Sbjct: 94 DYASALETFAEGQKLDGTDTNFDIWIKRCQE-IQNGSEPEVSAS 136
>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1 Length = 659
Score = 57.0 bits (136), Expect = 8e-08 Identities = 34/100 (34%), Positives = 52/100 (52%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YTK + ADP L +RA + +L+ F A +D N AI L+ S KA+ +G A + L Sbjct: 156 YTKGMDADPYNPV-LPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFAL 214
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQS 497 ++ E A+ + LEP N + N + K D A+ + S Sbjct: 215 QKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENS 254
Score = 50.4 bits (119), Expect = 7e-06 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPS-RAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYK 374 YT+ IAAD + A LLP+ RA ++K+Q + +A D +AI L+ S +KAF +G A Sbjct: 305 YTRGIAADSTNA--LLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTF 362
Query: 375 LEEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLSDSRNEEHL 536 L + AK F LEP N + + + ++ + ++ DS ++ Sbjct: 363 LGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKGRWDDVFLDSTQRHNV 416
>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1 Length = 660
Score = 54.7 bits (130), Expect = 4e-07 Identities = 33/103 (32%), Positives = 53/103 (51%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YTK + ADP L +RA + +L+ F A +D N AI L+ + KA+ +G A + L Sbjct: 157 YTKGMDADPYNPV-LPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFAL 215
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEG 506 ++ E A+ + LEP N + N + K + A+ + S G Sbjct: 216 QKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSGPG 258
Score = 53.5 bits (127), Expect = 8e-07 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPS-RAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYK 374 YT+ IAAD + A LLP+ RA ++K+Q + +A D +AI L+ S +KAF +G A Sbjct: 307 YTRGIAADRTNA--LLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTF 364
Query: 375 LEEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIADESQSEEGLSDSRNEEHL 536 L + AK F LEP N + + + ++ ++ DS H+ Sbjct: 365 LGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKGHWDDVFLDSTQRHHV 418
>sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1 Length = 304
Score = 53.9 bits (128), Expect = 7e-07 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YT+ I DP+ A +RA KL ++TDAI D KAI +++ +KA+ G+A + Sbjct: 108 YTQAIELDPNNAVYYC-NRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAM 166
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIAD-ESQSEEGLS 512 ++E A ++ +L+P N +++ + + + + S + GLS Sbjct: 167 NKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLS 212
>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1 Length = 304
Score = 53.9 bits (128), Expect = 7e-07 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Frame = +3
Query: 198 YTKVIAADPSKAASLLPSRAQVHIKLQNFTDAIADANKAIELNASSAKAFRCKGVACYKL 377 YT+ I DP+ A +RA KL ++TDAI D KAI +++ +KA+ G+A L Sbjct: 108 YTQAIELDPNNAVYYC-NRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAL 166
Query: 378 EEYETAKAAFTAGANLEPSNSDFQNWIMKCDNAIAD-ESQSEEGLS 512 ++E A ++ +L+P N +++ + + + + S + GLS Sbjct: 167 NKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLS 212
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6EBD5 |
Definition |
tr|B6EBD5|B6EBD5_SOYBN SGT1-2 OS=Glycine max |
Align length |
135 |
Score (bit) |
108.0 |
E-value |
2.0e-22 |
Report |
|