DK958645
Clone id TST39A01NGRL0002_I20
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_I20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TTCCAAGTAAACCAGAAATATGTCATAGGGATGTCTTGCATTTAAGGTGCAGTTTCTGCA
GATCCAATCTGCAGACCTCTTAAAGCTTTTCATATGGTAATAAAGCAGCACCACAAGATC
CATGCCTCCAGAACTCTTAAGCAACGTTTTATCTTTACTTCTATGCTGGTATGAGTTTCT
GCTGATAAATTAACAATCCATATAGTGTGTGGATATGAAGTTGGCAGATGTGCTGACAGG
GCTGAAGTAGGAGCTTCATTTGGGTGCTTGTATGCTAGGTTTGCCTCCTGCATTAGGGTC
ATGCTAAGCTTAGTTTGGAAGCTGTGTTTCACAGCTTCATTTGCAGAATAAAAGTTGGCC
AATGTCCAGGTGCAGGTATTTCGTGAAGCTTTTCTCAAATAGAATTGATTGTGATGCACA
TGAAGTGTGCAGCTTGCTTAAATGAGCTACTGTTTTGTGGTCTCCAATATCATAATGGGG
TGGTGACTGTGAATTCTTAGCTGGGTGGAAGTGGTTCACAGGTGAGTTTCCTATAGTTGT
AAGACATAATTGATTTTACCTGGAAGTTGTTGGCAATGTTACCATCTCTAGGTTGTCTTT
TATGTTGAGATTTGACCGGTTGCATTAGCTGCATGAGCAGAACTCTCTGCTTTTACATGC
AGATATCAAATCAGTATCAAATACCAG
■■Homology search results ■■ -
sp_hit_id Q17VU7
Definition sp|Q17VU7|HTPG_HELAH Chaperone protein htpG OS=Helicobacter acinonychis (strain Sheeba)
Align length 81
Score (bit) 32.0
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958645|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_I20, 5'
(687 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q17VU7|HTPG_HELAH Chaperone protein htpG OS=Helicobacter acin... 32 3.2

>sp|Q17VU7|HTPG_HELAH Chaperone protein htpG OS=Helicobacter
acinonychis (strain Sheeba) GN=htpG PE=3 SV=1
Length = 621

Score = 32.0 bits (71), Expect = 3.2
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -2

Query: 350 YSANEAVKHSFQTKLSMTLMQE-ANLAYKHPNEAPTSALSAHLPTSYPHTIWIVNLSAET 174
+ NE +K T++++ L E AN A + ++ S H+P T + E
Sbjct: 159 FEINECIKDEQGTEITLFLKDEDANFASRWEIDSIVKKYSEHIPFPIFLTYTDTKMEGEG 218

Query: 173 HTSIEVKIKRCLRVLEAWILW 111
EVK ++C ++ +A LW
Sbjct: 219 DHKKEVKEEKCEQINQASALW 239


tr_hit_id B6R0R5
Definition tr|B6R0R5|B6R0R5_9RHOB Putative uncharacterized protein OS=Pseudovibrio sp. JE062
Align length 39
Score (bit) 35.4
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958645|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_I20, 5'
(687 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6R0R5|B6R0R5_9RHOB Putative uncharacterized protein OS=Pseud... 35 3.4
tr|A3LT02|A3LT02_PICST RLR1 (THO2) (Fragment) OS=Pichia stipitis... 35 4.5
tr|Q0SI18|Q0SI18_RHOSR DNA-directed DNA polymerase I OS=Rhodococ... 34 10.0

>tr|B6R0R5|B6R0R5_9RHOB Putative uncharacterized protein
OS=Pseudovibrio sp. JE062 GN=PJE062_4911 PE=4 SV=1
Length = 92

Score = 35.4 bits (80), Expect = 3.4
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -1

Query: 540 TTIGNSPVNHFHPAKNSQSPPHYDIGDHKTVAHLSKLHT 424
T G P H HP KN H D G H+T H K HT
Sbjct: 45 TQHGGDPEGHKHPHKNRAGKGHSDNGHHRTKMHDHKEHT 83


>tr|A3LT02|A3LT02_PICST RLR1 (THO2) (Fragment) OS=Pichia stipitis
GN=RLR1 PE=4 SV=2
Length = 1574

Score = 35.0 bits (79), Expect = 4.5
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = -2

Query: 365 TLANFYSANEAVKHSFQTKLSMTLMQEANLAYKHPNEAP-------TSALSA-HLPTSYP 210
TL NF+ + E ++ SF + +T L + P T LSA + T +
Sbjct: 840 TLVNFFGSKEDLEKSFMSIAELTDTYNVPLQWSFELWRPLLAANESTEVLSAGFVSTFWQ 899

Query: 209 HTIWIVNLSAETHTSIEVKIKRCLRVLEAWI 117
++ +N SA+ +T+ VKI+ +R L+ WI
Sbjct: 900 LALYDLNYSADLYTNETVKIESNIRSLKEWI 930


>tr|Q0SI18|Q0SI18_RHOSR DNA-directed DNA polymerase I OS=Rhodococcus
sp. (strain RHA1) GN=polA PE=3 SV=1
Length = 914

Score = 33.9 bits (76), Expect = 10.0
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1

Query: 82 KAFHMVIKQHHKIHASRTLKQRFIFTSMLV*VSADKLTIHIVCGYEVGRCADRAE 246
+AF+ + ++ K H+ + + FTSML+ + D+ H+ ++V R RAE
Sbjct: 38 RAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQPSHVAAAFDVSRQTFRAE 92