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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958683
Clone id TST39A01NGRL0002_K11
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_K11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGTTGAGAGAGCGAGAGAGAAAGAGGGTTTTCTTCTTCCCGCTTCTCCACATACACTC
ACTCCCCCTCCCAGCGCGTGGCGGCCGCTTCTGCTCCTGAAGTCTGCAGCTTCCGGCTCC
ATTTTCGAGCTCGCCATTGTTCCTGTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCG
GCTTCCATGGCTCTGGCTGAAGTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGT
GATCCGGTTCGGACTATGGGTGGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCC
GACGACAAGAATGGGGATGCTACTCAGTTTAAAAGATTAGATGGAGCAGCTGAAGCGGCC
AATGCTGGCTATAGTATACCTGTCTTGGCAAGCTATGATGGAGGTGTGGGATGTGATACA
AGACACGTATTCTCTGGCATGCTTGCTGAGAATGGGCAGTCTATGTACTATGCCCCTGGT
TATGAGTTTCCACAGCAATCTCCTTATTGCTCACAGCCTCAAGGGGCTTACATGTCAAAT
ATGGGATCTGGAACAACGGGGTACTGTGGACCGCAGTATGGGCCTTATTATCAGCAGGTG
CCACCTGGGCTTATGCAGTATTAC
■■Homology search results ■■ -
sp_hit_id Q9W4E2
Definition sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster
Align length 115
Score (bit) 33.9
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958683|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K11, 5'
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=...    34   0.69 
sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen...    33   0.92 
sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead...    31   4.5  
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs...    31   4.5  
sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle ...    31   4.5  
sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287...    31   5.9  
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1...    31   5.9  
sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing p...    30   7.7  

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
            PE=1 SV=2
          Length = 3584

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 34/115 (29%), Positives = 45/115 (39%)
 Frame = -3

Query: 574  AVHSTPLFQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHH 395
            A HST        T +P  + S   +A ++  Q H     H QQ  Q+ +     PH H 
Sbjct: 2071 ATHSTSSSASSTATSQPASSSSLSSLASQSQQQSHR--QLHKQQQQQQQQQQQQQPHYH- 2127

Query: 394  SLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYG 230
              P Q +Y          LI   + HP     KH  E G    +HP S P H +G
Sbjct: 2128 --PHQPHYG---------LINGHQQHP-QLNGKHYAENGSTAGYHPHSHP-HPHG 2169


>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype
            2c (isolate BEBE1) PE=3 SV=3
          Length = 3037

 Score = 33.5 bits (75), Expect = 0.92
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
 Frame = +1

Query: 28   GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEIRLIXXXXXXXXXX 207
            G  LP    T  PPP   R ++L +S    ++ ELAI    CP                 
Sbjct: 2317 GCALPPPGTTPVPPPRRRRAVVLDQSNVGEALKELAIKSFGCPPP--------------- 2361

Query: 208  XXXXXXXHHTGDPVRTMGGGFKGDL---PQEHVSDDKNGDATQFKRLDG 345
                     +GDP  + GGG  G+    P +   D + G  +    L+G
Sbjct: 2362 ---------SGDPGHSTGGGTTGETSKSPPDEPDDSEAGSVSSMPPLEG 2401


>sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead
            virus PE=1 SV=1
          Length = 1069

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = -3

Query: 238  LYGEPSQAPRPPLQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAAT 77
            +YG P+QAP PP   E       E   RG  Q Q R  +       SG+ AAAT
Sbjct: 983  IYGSPNQAPAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAAT 1036


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
            japonica GN=FH12 PE=3 SV=3
          Length = 1669

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 265  HHP*SEPDHLYGEPSQAPRPPLQPEP 188
            HHP   P +L GE   AP PP  P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle
            OS=Mus musculus GN=Clcn1 PE=2 SV=2
          Length = 994

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 13   AREKEGFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 168
            A E+E  ++P  P T  PPPS   P  L  + A G + EL +V    P  E+
Sbjct: 922  APERE-VMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEEL 972


>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191
           OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1
          Length = 72

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = -3

Query: 427 RVLYHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE 248
           R+ YH  + HHS P   ++  +              H HS    H        +HH  S 
Sbjct: 4   RLNYHHHNYHHSYPHHHHHHNY--------------HYHSYPHHH--------HHH--SH 39

Query: 247 PDHLYGEPSQAPRPPLQPEPWKP 179
             H +  PS  P PP  P P  P
Sbjct: 40  HHHHHHLPSSPPSPPSPPSPPSP 62


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
           OS=Homo sapiens GN=HRCT1 PE=2 SV=1
          Length = 115

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 382 QVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 233
           +V  +Q WP +    +     H H     HVP VG   +HHP   P HL+
Sbjct: 52  RVRRAQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing
           protein FLJ44005 OS=Homo sapiens PE=2 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 144 RNNG--ELENGAGSCRLQEQKRPPRAGRGSECMWRSGK 37
           RN G  ELE  AGS R +EQ  P   GR     W SG+
Sbjct: 7   RNRGLRELEEVAGSSRTREQLVPRLGGRAGYDWWASGE 44
tr_hit_id B4N2C7
Definition tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni
Align length 115
Score (bit) 38.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958683|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K11, 5'
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161...    39   0.33 
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ...    37   0.95 
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060...    36   1.6  
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204...    36   2.1  
tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125...    35   2.8  
tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper...    35   2.8  
tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi...    35   4.7  
tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricor...    35   4.7  
tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Soran...    35   4.8  
tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas r...    35   4.8  
tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205...    34   6.2  
tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacil...    34   6.2  
tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase OS=Synec...    34   6.2  
tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeob...    34   8.0  
tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment...    34   8.0  
tr|Q0KHV9|Q0KHV9_DROME Rugose, isoform C OS=Drosophila melanogas...    34   8.0  
tr|B7Z0X3|B7Z0X3_DROME Rugose, isoform D OS=Drosophila melanogas...    34   8.0  
tr|B7Z0W8|B7Z0W8_DROME Rugose, isoform F OS=Drosophila melanogas...    34   8.0  

>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142
           PE=4 SV=1
          Length = 809

 Score = 38.5 bits (88), Expect = 0.33
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
 Frame = -3

Query: 511 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 347
           +N  + V+ H Q H+T   H   A       +H+ H HH+      P   ++  H    +
Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228

Query: 346 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEP 188
            H +       HPH+    HVP VG   +    + P      P   P P L P+P
Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP-----APPTLPPPTLMPQP 278


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
           PE=4 SV=1
          Length = 793

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -3

Query: 403 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 224
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHP 269

Query: 223 ---SQAPRPPLQPEPWKP 179
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
           PE=4 SV=1
          Length = 793

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
 Frame = -3

Query: 403 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 224
           L H  P    Y ++ P    H     E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPVDPYDRYGPPLHPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHP 269

Query: 223 ---SQAPRPPLQPEPWKP 179
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
           PE=4 SV=1
          Length = 791

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -3

Query: 403 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 224
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P H++G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHP 269

Query: 223 ---SQAPRPPLQPEPWKP 179
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500
           PE=4 SV=1
          Length = 788

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = -3

Query: 553 FQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVY 374
           F  P L+  P+E  + K+   +     H     H QQ  Q  +  YH    H     Q +
Sbjct: 296 FSTPMLS--PMEIKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQH 353

Query: 373 YSQHWPLQLLHL 338
           Y QH+  Q  HL
Sbjct: 354 YQQHYQQQQQHL 365


>tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_021280 PE=4 SV=1
          Length = 122

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 454 GQSMYYAPGYEFPQQSPYCSQPQ-GAYMSNMGSGTT 558
           GQ MYY P   +PQQ PY  Q Q G Y    G G++
Sbjct: 65  GQPMYYPPPQGYPQQQPYPPQQQPGYYADERGGGSS 100


>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 232 GEPSQAPRPPLQPEPWKP 179
           G+P+ AP PP +PEPW+P
Sbjct: 154 GDPADAPEPPPEPEPWEP 171


>tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_43574 PE=4 SV=1
          Length = 499

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 383 SWQAMMEVWDVIQDTYSLACLLRM-GSLCTMPLVMSFHSNLLIAHSLKGLTCQIWDLEQR 559
           SW   ++VWD+ +      CLL + GS     L  S+HS+ ++A      T ++WD+   
Sbjct: 347 SWDHSLKVWDMERQD----CLLTLNGSRVVSCLDTSYHSSGIVATGHPDCTVRLWDVRID 402

Query: 560 GTVDRSMGL 586
            T + S+ L
Sbjct: 403 ATNESSLAL 411


>tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein
           OS=Sorangium cellulosum (strain So ce56) GN=sce3477 PE=4
           SV=1
          Length = 486

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 26/88 (29%), Positives = 31/88 (35%)
 Frame = +1

Query: 289 EHVSDDKNGDATQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGMLAENGQSMY 468
           EHV D   G         GA   A  G  +P      GGVG      F G    +G   Y
Sbjct: 66  EHVVDVPAGGGADVPNSGGADVPAGGGADVP----NGGGVGDRCAGPFPGEEPRDGSGYY 121

Query: 469 YAPGYEFPQQSPYCSQPQGAYMSNMGSG 552
             PG  +P +S       G YM  +  G
Sbjct: 122 LKPGLLYPAES------SGVYMGQLSLG 143


>tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas
           reinhardtii GN=VPS45 PE=4 SV=1
          Length = 620

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +1

Query: 235 TGDPVRTMGGGFKGDLPQEHVSDDKNGDATQFKRL-----DGAAEAANAGYSIPVLASYD 399
           TGD V T+    K   P+E +     G   +  +      D A  AANAG  +P  AS  
Sbjct: 505 TGDEVATLTANAKRAPPREVIVFVLGGTTYEEAKAVAEMNDRANAAANAGPGVPAGASPS 564

Query: 400 GGVGCDTRHVFSGMLAENGQSMYYA--PGYEFPQQSPYCSQPQGAYMSNMGSG 552
           GG     R V  G    N Q    A   G   PQ +      QGA +++ GSG
Sbjct: 565 GGQLPTPRVVLGGTGILNSQMFLSALTSGLNIPQSA------QGAGVTSSGSG 611