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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958684
Clone id TST39A01NGRL0002_K12
Library
Length 648
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_K12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAAGGAGTTACTTTTCATTTCGTTACTTCTCGGTACGTGGAAGCGCAATTCAACACCCT
CTTCTTCTTCTCAAAACTGGCACGGATGGATTCGAACCGCCGAGTGACGGGACCAAAACC
CGCTGCCTTACCGCTTGGCCACGCCCCACAAATGATTATTGCAACCAATATCTCACACAT
CGGCTTTACTGTCAACCGCTTCCCCCAACTTAACGACTCAACCTCCTAGGAAAAAGCAAC
TGAATAGGTGAATTGAATTTGATAGGAATTGCCGGTATTTGGCGAAAGAAAACTAATTGG
AAGCCTATTTAGGAGAGATTTGGTTTAACTAAGAATTGAATCTCCTGATAGTTACCTCAT
TCAGATGCAGAAATCTATGATAATACGTAATCCTATTTATGTACGTGAACAAAAAAATCT
AGATGTCCGACAAGTTGCCCAATCAAACAATAAAGTATAAAAACATAGACATGTTAATAG
AAAATCACATGTTCCATAACTGGAGAGTAGACATGACAGTCTCGTACAGTATTTATCTAG
AAAATTCTCTTCACTTTGGCGATGCCCTTTTGGCCAAGTTACCCGAAGCTTATGCCATTT
TCGATCCAATTGTAGACGTAATGCCGGTAATCCCGGTGTTCTTTCTCC
■■Homology search results ■■ -
sp_hit_id Q85FN7
Definition sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS=Adiantum capillus-veneris
Align length 28
Score (bit) 58.9
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K12, 5'
         (648 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS...    59   2e-08
sp|Q6YXN4|PSBK_PHYPA Photosystem II reaction center protein K OS...    36   0.15 
sp|Q5UR20|YR366_MIMIV Putative ATP-dependent RNA helicase R366 O...    33   0.98 
sp|Q9C000|NALP1_HUMAN NACHT, LRR and PYD domains-containing prot...    32   3.8  
sp|Q9CMX0|Y682_PASMU Uncharacterized protein PM0682 OS=Pasteurel...    31   4.9  
sp|Q8MA00|PSBK_CHAGL Photosystem II reaction center protein K OS...    31   6.4  
sp|Q88P88|MURA_PSEPK UDP-N-acetylglucosamine 1-carboxyvinyltrans...    31   6.4  
sp|B0KQJ3|MURA_PSEPG UDP-N-acetylglucosamine 1-carboxyvinyltrans...    31   6.4  
sp|A5VZ54|MURA_PSEP1 UDP-N-acetylglucosamine 1-carboxyvinyltrans...    31   6.4  
sp|Q5FU81|PSD_GLUOX Phosphatidylserine decarboxylase proenzyme O...    30   8.3  
sp|P10348|PSBK_MARPO Photosystem II reaction center protein K OS...    30   8.3  

>sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K
           OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1
          Length = 58

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 513 MTVSYSIYLENSLHFGDALLAKLPEAYA 596
           MTVSYSIYLENSLHFGDALLAKLPEAYA
Sbjct: 1   MTVSYSIYLENSLHFGDALLAKLPEAYA 28


>sp|Q6YXN4|PSBK_PHYPA Photosystem II reaction center protein K
           OS=Physcomitrella patens GN=psbK PE=3 SV=1
          Length = 58

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 513 MTVSYSIYLENSLHFGDALLAKLPEAYA 596
           M   ++IYL+N+ H    +LAKLPEAYA
Sbjct: 1   MLAIFNIYLDNAFHLNGIILAKLPEAYA 28


>sp|Q5UR20|YR366_MIMIV Putative ATP-dependent RNA helicase R366
           OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R366 PE=3
           SV=1
          Length = 1766

 Score = 33.5 bits (75), Expect = 0.98
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
 Frame = +3

Query: 438 PNQTIKYKNIDMLIENHMFH-----NWRV------DMTVSYSIYLENSLHFGDALLAKL 581
           PN  + Y++I   I NH+FH      W +      +  VSY  YLEN   F + L  ++
Sbjct: 258 PNSGLSYQDIYNTISNHLFHEIKNYKWLIYDIVIAEKPVSYLKYLENKFDFDELLEGRM 316


>sp|Q9C000|NALP1_HUMAN NACHT, LRR and PYD domains-containing protein
           1 OS=Homo sapiens GN=NLRP1 PE=1 SV=1
          Length = 1473

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +1

Query: 127 LTAWPRPTNDYCNQYLTHRLYCQPLPPT*RLNLLGKSN*IGELNLIGIAGIWRKKTNWKP 306
           LT   + T   C  YL   L  QPL P  R           +L  +   GIW+KKT + P
Sbjct: 540 LTLTSKTTTTLCLHYLAQALQAQPLGPQLR-----------DLCSLAAEGIWQKKTLFSP 588


>sp|Q9CMX0|Y682_PASMU Uncharacterized protein PM0682 OS=Pasteurella
           multocida GN=PM0682 PE=4 SV=1
          Length = 102

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +G  QAVR RVL+ +  GSNPS P +
Sbjct: 2   LGYRQAVRHRVLISAFLGSNPSTPAI 27



 Score = 31.2 bits (69), Expect = 4.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +G  QAVR RVL+ +  GSNPS P +
Sbjct: 42  LGYRQAVRHRVLISAFLGSNPSTPAI 67


>sp|Q8MA00|PSBK_CHAGL Photosystem II reaction center protein K
           OS=Chaetosphaeridium globosum GN=psbK PE=3 SV=1
          Length = 58

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 528 SIYLENSLHFGDALLAKLPEAYA 596
           S + ++S +F +A LAKLPEAYA
Sbjct: 6   STFFDSSSNFSEAFLAKLPEAYA 28


>sp|Q88P88|MURA_PSEPK UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Pseudomonas putida (strain
           KT2440) GN=murA PE=3 SV=1
          Length = 421

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 80  ARMDSNRRVTGPKPAALPLGHAPQMIIATNISHIGFTVNRFPQLNDSTS 226
           AR+D   R++G K AALP+      + AT ++    TV   P L+D T+
Sbjct: 10  ARLDGEIRISGAKNAALPI------LAATLLADGPVTVGNLPHLHDITT 52


>sp|B0KQJ3|MURA_PSEPG UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Pseudomonas putida (strain
           GB-1) GN=murA PE=3 SV=1
          Length = 421

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 80  ARMDSNRRVTGPKPAALPLGHAPQMIIATNISHIGFTVNRFPQLNDSTS 226
           AR+D   R++G K AALP+      + AT ++    TV   P L+D T+
Sbjct: 10  ARLDGEIRISGAKNAALPI------LAATLLADGPVTVGNLPHLHDITT 52


>sp|A5VZ54|MURA_PSEP1 UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Pseudomonas putida (strain
           F1 / ATCC 700007) GN=murA PE=3 SV=1
          Length = 421

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 80  ARMDSNRRVTGPKPAALPLGHAPQMIIATNISHIGFTVNRFPQLNDSTS 226
           AR+D   R++G K AALP+      + AT ++    TV   P L+D T+
Sbjct: 10  ARLDGEIRISGAKNAALPI------LAATLLADGPVTVGNLPHLHDITT 52


>sp|Q5FU81|PSD_GLUOX Phosphatidylserine decarboxylase proenzyme
           OS=Gluconobacter oxydans GN=psd PE=3 SV=1
          Length = 225

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 119 PAALPLGHAPQMIIATNISHIGFTVNRFPQLNDST 223
           PAAL +GH P   ++T +S +   +NR P   + T
Sbjct: 89  PAALEMGHTPVWRVSTFLSVLNVHINRMPAAGEVT 123
tr_hit_id A4QM00
Definition tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis
Align length 24
Score (bit) 43.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K12, 5'
         (648 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1            43   0.014
tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis G...    41   0.071
tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1            40   0.093
tr|Q3Z4C8|Q3Z4C8_SHISS Putative RNA OS=Shigella sonnei (strain S...    39   0.35 
tr|Q32IQ7|Q32IQ7_SHIDS Putative RNA OS=Shigella dysenteriae sero...    39   0.35 
tr|Q324N1|Q324N1_SHIBS Putative uncharacterized protein OS=Shige...    39   0.35 
tr|Q8X2E8|Q8X2E8_ECO57 Putative RNA OS=Escherichia coli O157:H7 ...    39   0.35 
tr|Q2FW88|Q2FW88_STAA8 Putative uncharacterized protein OS=Staph...    37   0.79 
tr|Q5FGR1|Q5FGR1_EHRRG Putative uncharacterized protein OS=Ehrli...    37   0.80 
tr|Q5FCE4|Q5FCE4_EHRRW Putative uncharacterized protein OS=Ehrli...    37   0.80 
tr|A2T313|A2T313_ANGEV Photosystem II protein K OS=Angiopteris e...    37   1.3  
tr|Q3XYJ4|Q3XYJ4_ENTFC Putative uncharacterized protein OS=Enter...    37   1.4  
tr|A9MUH4|A9MUH4_SALPB Putative uncharacterized protein OS=Salmo...    35   3.0  
tr|A9MKB5|A9MKB5_SALAR Putative uncharacterized protein OS=Salmo...    35   3.0  
tr|A4NFS4|A4NFS4_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.0  
tr|A4N490|A4N490_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.0  
tr|A1A8T2|A1A8T2_ECOK1 Putative uncharacterized protein OS=Esche...    34   6.7  
tr|A4NSR7|A4NSR7_HAEIN Putative uncharacterized protein OS=Haemo...    34   6.7  
tr|A4NMJ1|A4NMJ1_HAEIN Putative uncharacterized protein OS=Haemo...    34   6.7  
tr|A4NA28|A4NA28_HAEIN Putative uncharacterized protein OS=Haemo...    34   6.7  
tr|A4MV85|A4MV85_HAEIN Putative uncharacterized protein OS=Haemo...    34   6.7  
tr|A1A8T1|A1A8T1_ECOK1 Putative uncharacterized protein OS=Esche...    34   8.8  
tr|P91208|P91208_CAEEL Putative uncharacterized protein OS=Caeno...    34   8.8  

>tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1
          Length = 84

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 77  LARMDSNRRVTGPKPAALPLGHAP 148
           L R DSN R+TG KPAALPLGHAP
Sbjct: 34  LGRKDSNLRITGSKPAALPLGHAP 57


>tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis
           GN=SCH_0700 PE=4 SV=1
          Length = 120

 Score = 40.8 bits (94), Expect = 0.071
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +3

Query: 78  WHGWIRTAE*RDQNPLPYRLATPHK*LLQPISHTSA 185
           W   IRT+E R+QNP+PYRLA P + + +P+ +  A
Sbjct: 84  WGTRIRTSECRNQNPVPYRLAIPQQIIFEPVEYLDA 119


>tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1
          Length = 47

 Score = 40.4 bits (93), Expect = 0.093
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = -2

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +GRGQAVRQ+VL+   GGSNPSVP L
Sbjct: 3   MGRGQAVRQQVLILLFGGSNPSVPDL 28


>tr|Q3Z4C8|Q3Z4C8_SHISS Putative RNA OS=Shigella sonnei (strain
           Ss046) GN=SSON_0623 PE=4 SV=1
          Length = 39

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  WHGWIRTAE*RDQNPLPYRLATPH 149
           W  WIRT E R Q P+PYRLA PH
Sbjct: 10  WGTWIRTRECRYQKPVPYRLAIPH 33


>tr|Q32IQ7|Q32IQ7_SHIDS Putative RNA OS=Shigella dysenteriae
           serotype 1 (strain Sd197) GN=SDY_0604 PE=4 SV=1
          Length = 39

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  WHGWIRTAE*RDQNPLPYRLATPH 149
           W  WIRT E R Q P+PYRLA PH
Sbjct: 10  WGTWIRTRECRYQKPVPYRLAIPH 33


>tr|Q324N1|Q324N1_SHIBS Putative uncharacterized protein OS=Shigella
           boydii serotype 4 (strain Sb227) GN=SBO_0532 PE=4 SV=1
          Length = 39

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  WHGWIRTAE*RDQNPLPYRLATPH 149
           W  WIRT E R Q P+PYRLA PH
Sbjct: 10  WGTWIRTRECRYQKPVPYRLAIPH 33


>tr|Q8X2E8|Q8X2E8_ECO57 Putative RNA OS=Escherichia coli O157:H7
           GN=ECs0703 PE=4 SV=1
          Length = 39

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  WHGWIRTAE*RDQNPLPYRLATPH 149
           W  WIRT E R Q P+PYRLA PH
Sbjct: 10  WGTWIRTRECRYQKPVPYRLAIPH 33


>tr|Q2FW88|Q2FW88_STAA8 Putative uncharacterized protein
           OS=Staphylococcus aureus (strain NCTC 8325)
           GN=SAOUHSC_02412 PE=4 SV=1
          Length = 38

 Score = 37.4 bits (85), Expect = 0.79
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -2

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVLR 69
           +G  QAVRQR L PSL GSNP+ P +R
Sbjct: 1   MGYSQAVRQRTLTPSLVGSNPASPAIR 27


>tr|Q5FGR1|Q5FGR1_EHRRG Putative uncharacterized protein
           OS=Ehrlichia ruminantium (strain Gardel)
           GN=ERGA_CDS_09470 PE=4 SV=1
          Length = 80

 Score = 37.4 bits (85), Expect = 0.80
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 79  GTDGFEPPSDGTKTRCLTAWPRP 147
           G +GFEP +DG K RCLT W  P
Sbjct: 3   GMEGFEPSNDGIKNRCLTTWLHP 25


>tr|Q5FCE4|Q5FCE4_EHRRW Putative uncharacterized protein
           OS=Ehrlichia ruminantium (strain Welgevonden)
           GN=ERWE_CDS_09550 PE=4 SV=1
          Length = 80

 Score = 37.4 bits (85), Expect = 0.80
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 79  GTDGFEPPSDGTKTRCLTAWPRP 147
           G +GFEP +DG K RCLT W  P
Sbjct: 3   GMEGFEPSNDGIKNRCLTTWLHP 25