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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958689
Clone id TST39A01NGRL0002_K17
Library
Length 686
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_K17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACACACAGAACAAGGGTTTCGATAGGATCTGTAACCCGCCCCATTCAAATTCATATCTC
TGCTAATTCTGGCCTTTGCCTTTTCGGTTGTGGGAAGCCCTTGTTACCCTCGTGTTTGGG
TGAAAGTCTTGTTGTAAGCTTGCTTTCTGGCCATGCAAGCATTCAGAGATCAATGGATTG
TGATTATGATGACAAATATGTGCTAATGTACGGTGCGCTGGAGCAGGATTTTGACGAGCT
TCAAGCGGAAGCGGCAGAAGTTGCAGCTCTCTTGCAGAAGGCTAAAGAGAACAAGCTCCG
TCTACAAACTGAGATTAAGTTTTTGAAGAGAAGGGCTTCAATGTTGAGAGCAAGTATGAG
AATACCAGATCCTTATCTCACTAGGGAAGCTGTCGGAGAAGGCGCTCAATATATTTTTGG
GCCATCCAGAGCTTCTACCGGAAGATTGGTGCTTGGGGGGGATTTTCAGTCTAAAGCTTT
GAACTCGCAATCTTTAAATGTTTCAAGCAGGGTGCCCTCCAACTTAATATCATCTTCTAA
ACATCAGGACGTTGTAGGCGTGCTGAAAACTTCTTCTAAGCAGGCTTCGAATGGTGTTTT
ACAACCAAAGAGAGTGGGAAAGAGGAAAATTTCCTGGCAAGATGATTTCTCAGTGAGGGG
ATGATGTCTAACTTGGGAGCACTTGA
■■Homology search results ■■ -
sp_hit_id Q94KE2
Definition sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thaliana
Align length 105
Score (bit) 30.8
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958689|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K17, 5'
         (686 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thali...    31   7.1  

>sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thaliana
           GN=TIC PE=1 SV=2
          Length = 1550

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +2

Query: 350 ASMRIPDPYLTREAVG-EGAQYIFGPSRA-STGRLVLGGDFQSKALNSQSLNVSSRVPSN 523
           +S ++  P   ++ +  E A+ ++G  R  ST +    G+  ++A  S ++ V SRV S 
Sbjct: 294 SSSKLSSPVAVQDEIEIEIAEVLYGMMRMPSTSKQEAAGNDLTEAAKS-TVEVKSRVSSP 352

Query: 524 LISSSKHQDVVGVLKTSSKQASNGVLQPKRVGKRKISWQDDFSVR 658
           + +          L  +S  ++   + PKR   R + ++DD S R
Sbjct: 353 ISNPQTLPQSSITLAANSSSSNVSAIAPKRKKPRHVKYEDDNSSR 397
tr_hit_id A9NR01
Definition tr|A9NR01|A9NR01_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 27
Score (bit) 37.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958689|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K17, 5'
         (686 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NR01|A9NR01_PICSI Putative uncharacterized protein OS=Picea...    37   1.2  
tr|B7LJF8|B7LJF8_ESCFE Adhesin for cattle intestine colonization...    36   2.0  
tr|Q8XD19|Q8XD19_ECO57 Putative uncharacterized protein OS=Esche...    35   5.9  
tr|B5Z3Z9|B5Z3Z9_ECO5E PKD domain protein OS=Escherichia coli O1...    35   5.9  
tr|Q7AGX4|Q7AGX4_ECO57 Putative uncharacterized protein ECs0541 ...    35   5.9  
tr|B7N941|B7N941_ECOLX Adhesin for cattle intestine colonization...    35   5.9  
tr|B6ZPK4|B6ZPK4_ECO57 PKD domain protein OS=Escherichia coli O1...    35   5.9  
tr|B3BT67|B3BT67_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  
tr|B3AMK9|B3AMK9_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  
tr|B3A4L9|B3A4L9_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  
tr|B2PFK1|B2PFK1_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  
tr|B2P261|B2P261_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  
tr|B2NR10|B2NR10_ECO57 Large repetitive protein OS=Escherichia c...    35   5.9  

>tr|A9NR01|A9NR01_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 222

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 578 KQASNGVLQPKRVGKRKISWQDDFSVR 658
           K   NG L P R GKRKISWQD  +++
Sbjct: 195 KDVPNGFLLPNRTGKRKISWQDQMALK 221


>tr|B7LJF8|B7LJF8_ESCFE Adhesin for cattle intestine colonization
           OS=Escherichia fergusonii GN=siiEA PE=4 SV=1
          Length = 7222

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N++S+S+H  
Sbjct: 334 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIVSASEHNA 393

Query: 551 VVGVLKTSSKQASNGV 598
            + V  TS+ +A   V
Sbjct: 394 SLVVSGTSNAEAGQTV 409


>tr|Q8XD19|Q8XD19_ECO57 Putative uncharacterized protein
           OS=Escherichia coli O157:H7 GN=Z0609 PE=4 SV=2
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B5Z3Z9|B5Z3Z9_ECO5E PKD domain protein OS=Escherichia coli
           O157:H7 (strain EC4115 / EHEC) GN=ECH74115_0581 PE=4
           SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|Q7AGX4|Q7AGX4_ECO57 Putative uncharacterized protein ECs0541
           OS=Escherichia coli O157:H7 GN=ECs0541 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B7N941|B7N941_ECOLX Adhesin for cattle intestine colonization
           OS=Escherichia coli GN=siiEA PE=4 SV=1
          Length = 6925

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N++S+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIVSAAEHNA 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B6ZPK4|B6ZPK4_ECO57 PKD domain protein OS=Escherichia coli
           O157:H7 str. TW14588 GN=ESCCO14588_1933 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B3BT67|B3BT67_ECO57 Large repetitive protein OS=Escherichia coli
           O157:H7 str. EC508 GN=ECH7EC508_4441 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B3AMK9|B3AMK9_ECO57 Large repetitive protein OS=Escherichia coli
           O157:H7 str. EC4486 GN=ECH7EC4486_0512 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410


>tr|B3A4L9|B3A4L9_ECO57 Large repetitive protein OS=Escherichia coli
           O157:H7 str. EC4401 GN=ECH7EC4401_2461 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 371 PYLTREAVGEGAQYIFGPSRASTGRLVLGGDFQSKALNSQSLNVSSRVPSNLISSSKHQD 550
           P    +A+GEG Q +    + +TG  V G    +      +L +++    N+IS+++H  
Sbjct: 335 PTADAQALGEGNQAVLVSGKDATGNTVTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNV 394

Query: 551 VVGVLKTSSKQASNGV 598
            + +  TS+ +A   V
Sbjct: 395 ALVLSGTSNAEAGQTV 410