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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958690
Clone id TST39A01NGRL0002_K18
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_K18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAAGATTCCCAGCTACAACTTGAGACTTGCTAATGAATCTTTGCGGCAACACTGGGGAA
AATATTTTAATGAAGCTCAGTGGAATTGGAGATTAATGAAAACCATTATGACAGTATGTC
ACATATATGATGAAGAGAAGAATTATGTCGCATTCGACGAGGGAAAGGAAGAATCGAAGA
TTATTGGGTCACTCAGGAGAGTAATGCCTAACATTCCATAGGCGGATGACAGTAGCGTGA
TATGGCTACTGTGCTCTATTTTCCATAGCTTCAAATCTTTGAGAGTGCATACGGGCAGCA
TTATTGCCCTTGTAAGATCTTTTGTTCCGAAAACCTTACTTGGGCGGCTGCCAGATTTTG
TCTGCACCTGCACTGATGTACGCTATAGCCCAACTGTGCGCGGTGAGCCAGACTTGATGA
GCCAGAATGTATAACTTGGGCTTTTGTCATTAGCTCTGTATTTTTTACTATATTGGACAT
TGTCACACATTGCGTCACATTTTTGCAGCAATACCTGCAATTTGTGTATTGAGAATCAGA
GATTGATTTGTAAGGCATCAAAACTACTCAGCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46312
Definition sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana
Align length 71
Score (bit) 102.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958690|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K18, 5'
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast...   102   2e-21
sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast...    99   1e-20
sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast...    93   1e-18
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast...    83   1e-15
sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. ...    62   2e-09

>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
           OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
          Length = 448

 Score =  102 bits (253), Expect = 2e-21
 Identities = 45/71 (63%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A+ES++++WGKY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+
Sbjct: 375 RIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQ 434

Query: 180 IIGSLRRVMPN 212
            I  L++ MPN
Sbjct: 435 PITFLKKAMPN 445


>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic
           OS=Brassica napus PE=2 SV=1
          Length = 443

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A++S++++WGKY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+
Sbjct: 370 RIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQ 429

Query: 180 IIGSLRRVMPN 212
            I  L++ MP+
Sbjct: 430 PITFLKKAMPD 440


>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic
           OS=Spinacia oleracea GN=FAD6 PE=1 SV=1
          Length = 447

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 42/71 (59%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEG-KEESK 179
           KIPSYNLR AN+SL ++WG+Y N+ + NWRLM+TIMT CHIYD++ NYV+F++   EES+
Sbjct: 375 KIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQ 434

Query: 180 IIGSLRRVMPN 212
            I   +RVMP+
Sbjct: 435 PISIPKRVMPD 445


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
           OS=Glycine max PE=2 SV=1
          Length = 424

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 33/47 (70%), Positives = 43/47 (91%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKN 143
           +IPSYNLR A++SL+++WG+Y NEA WNWRLMKTIMTVC +YD+EK+
Sbjct: 369 RIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKS 415


>sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp.
           (strain PCC 6803) GN=desA PE=3 SV=1
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%)
 Frame = +3

Query: 6   IPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEGKE 170
           IPSYNLRLA+ SL+++WG +  E  +NW+LM+ I   CH+YD E  Y  F   K+
Sbjct: 296 IPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSLKK 350
tr_hit_id A9NV95
Definition tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 72
Score (bit) 123.0
E-value 8.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958690|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_K18, 5'
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea...   123   8e-27
tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Popul...   108   3e-22
tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase...   108   3e-22
tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella paten...   106   8e-22
tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Ol...   104   3e-21
tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase OS=...   104   3e-21
tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, who...   104   3e-21
tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplas...   100   6e-20
tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase, c...   100   7e-20
tr|Q0J5E5|Q0J5E5_ORYSJ Os08g0440900 protein (Fragment) OS=Oryza ...   100   7e-20
tr|B8BB37|B8BB37_ORYSI Putative uncharacterized protein OS=Oryza...   100   7e-20
tr|B7E505|B7E505_ORYSJ cDNA clone:001-011-F10, full insert seque...   100   7e-20
tr|A3BTJ3|A3BTJ3_ORYSJ Putative uncharacterized protein OS=Oryza...   100   7e-20
tr|B6TGK8|B6TGK8_MAIZE Putative uncharacterized protein OS=Zea m...    99   2e-19
tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4...    97   6e-19
tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2...    96   1e-18
tr|O48663|O48663_CHLRE Chloroplast w6 desaturase (Omega-6-FAD, c...    83   9e-15
tr|A3QQP5|A3QQP5_MESVI Chloroplast omega-6 fatty acid desaturase...    82   2e-14
tr|Q9ZSV6|Q9ZSV6_ACEAT Putative chloroplast desaturase (Fragment...    81   4e-14
tr|B8HXM7|B8HXM7_9CHRO Fatty acid desaturase OS=Cyanothece sp. P...    69   1e-10
tr|B0C0E1|B0C0E1_ACAM1 Fatty acid desaturase (Delta(12) desatura...    69   2e-10
tr|B1WXI5|B1WXI5_CYAA5 Fatty acid desaturase OS=Cyanothece (stra...    68   3e-10
tr|Q55231|Q55231_SYNP2 Delta 12 desaturase OS=Synechococcus sp. ...    68   4e-10
tr|A3IZH1|A3IZH1_9CHRO Fatty acid desaturase OS=Cyanothece sp. C...    65   2e-09
tr|Q9SBU4|Q9SBU4_CHLSW Chloroplast w6 desaturase OS=Chlamydomona...    65   3e-09
tr|B4BY53|B4BY53_9CHRO Fatty acid desaturase OS=Cyanothece sp. P...    64   6e-09
tr|A8YGG1|A8YGG1_MICAE Similar to tr|Q55230|Q55230 OS=Microcysti...    64   8e-09
tr|B0JYE1|B0JYE1_MICAN Delta 12 acyl-lipid desaturase OS=Microcy...    63   1e-08
tr|B7JUV3|B7JUV3_SYNP8 Fatty acid desaturase OS=Synechococcus sp...    63   1e-08
tr|Q55230|Q55230_SYNY4 Delta 12 desaturase OS=Synechocystis sp. ...    62   2e-08

>tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 460

 Score =  123 bits (308), Expect = 8e-27
 Identities = 57/72 (79%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEG-KEESK 179
           KIPSYNLRLA +SLR++WGKY NEA+WNWRLMKTIMT CHIYDEE NYVAFDE   EESK
Sbjct: 388 KIPSYNLRLAQDSLRKNWGKYLNEAKWNWRLMKTIMTKCHIYDEENNYVAFDEDLPEESK 447

Query: 180 IIGSLRRVMPNI 215
           +IG +RR+MPNI
Sbjct: 448 VIGFVRRMMPNI 459


>tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 444

 Score =  108 bits (269), Expect = 3e-22
 Identities = 46/71 (64%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IP YNLR+A++SL+++WGKY NEA+WNWRLMKTIMT+CH+YD+E+NYVAFD+   EES+
Sbjct: 372 RIPHYNLRMAHKSLQENWGKYLNEAKWNWRLMKTIMTLCHVYDKEENYVAFDQLAPEESQ 431

Query: 180 IIGSLRRVMPN 212
            +  L+RVMP+
Sbjct: 432 PVAFLKRVMPD 442


>tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase
           OS=Jatropha curcas PE=2 SV=1
          Length = 440

 Score =  108 bits (269), Expect = 3e-22
 Identities = 47/71 (66%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           KIPSYNLR A++S++++WGKY NEA WNWRLMKTIMT+CH+YD+E+NY+AFD+   EES+
Sbjct: 368 KIPSYNLRAAHKSIQENWGKYINEATWNWRLMKTIMTICHVYDKEQNYIAFDKIAPEESQ 427

Query: 180 IIGSLRRVMPN 212
            I  L+RVMP+
Sbjct: 428 PIEFLKRVMPD 438


>tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222981 PE=4 SV=1
          Length = 454

 Score =  106 bits (265), Expect = 8e-22
 Identities = 46/71 (64%), Positives = 61/71 (85%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEGKEESKI 182
           KIPSYNLRLA+ESL ++WGK+ N A++NWRLMK IMT CH YD EKNY +FD G+++S +
Sbjct: 383 KIPSYNLRLAHESLVENWGKHLNIAKFNWRLMKVIMTECHYYDPEKNYTSFDNGEDKSPV 442

Query: 183 IGSLRRVMPNI 215
           IG+LR+VMP++
Sbjct: 443 IGTLRKVMPDM 453


>tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Olea
           europaea subsp. europaea GN=fad6 PE=2 SV=1
          Length = 443

 Score =  104 bits (260), Expect = 3e-21
 Identities = 45/71 (63%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A++SL+++WGKY NEA WNWRLMKTI+T+CH+YD+E+NYVAFDE   ++S+
Sbjct: 371 RIPSYNLRAAHKSLQENWGKYMNEATWNWRLMKTILTICHVYDKEQNYVAFDELAPKDSQ 430

Query: 180 IIGSLRRVMPN 212
            I  L++VMP+
Sbjct: 431 PITFLKKVMPD 441


>tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase
           OS=Olea europaea GN=FAD6 PE=2 SV=1
          Length = 443

 Score =  104 bits (260), Expect = 3e-21
 Identities = 45/71 (63%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A++SL+++WGKY NEA WNWRLMKTI+T+CH+YD+E+NYVAFDE   ++S+
Sbjct: 371 RIPSYNLRAAHKSLQENWGKYMNEATWNWRLMKTILTICHVYDKEQNYVAFDELAPKDSQ 430

Query: 180 IIGSLRRVMPN 212
            I  L++VMP+
Sbjct: 431 PITFLKKVMPD 441


>tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004305001 PE=4 SV=1
          Length = 301

 Score =  104 bits (260), Expect = 3e-21
 Identities = 46/71 (64%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A++SL+++WGKY NEA+WNWRLMKTI+T+CH+Y++E+NYVAFD    EES+
Sbjct: 229 RIPSYNLRAAHQSLQENWGKYLNEARWNWRLMKTILTMCHVYNKEQNYVAFDNLAPEESQ 288

Query: 180 IIGSLRRVMPN 212
            I  LR+VMP+
Sbjct: 289 PIVFLRKVMPD 299


>tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplast
           delta-12 fatty acid desaturase) OS=Descurainia sophia
           GN=FAD6 PE=2 SV=1
          Length = 447

 Score =  100 bits (249), Expect = 6e-20
 Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A++S++++WGKY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+
Sbjct: 374 RIPSYNLRAAHKSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQ 433

Query: 180 IIGSLRRVMPN 212
            I  L++ MPN
Sbjct: 434 PITFLKKAMPN 444


>tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0528B09.19 PE=4 SV=1
          Length = 414

 Score =  100 bits (248), Expect = 7e-20
 Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A +S++Q+WGKY NEA WNWRLMKTI+T CH+YD+++ YV FDE   EES+
Sbjct: 342 RIPSYNLRAAYDSIKQNWGKYINEASWNWRLMKTILTKCHVYDKDRYYVPFDEVAPEESQ 401

Query: 180 IIGSLRRVMPN 212
            I  L++VMP+
Sbjct: 402 PIKFLKKVMPD 412


>tr|Q0J5E5|Q0J5E5_ORYSJ Os08g0440900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0440900 PE=4 SV=1
          Length = 184

 Score =  100 bits (248), Expect = 7e-20
 Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   KIPSYNLRLANESLRQHWGKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESK 179
           +IPSYNLR A +S++Q+WGKY NEA WNWRLMKTI+T CH+YD+++ YV FDE   EES+
Sbjct: 112 RIPSYNLRAAYDSIKQNWGKYINEASWNWRLMKTILTKCHVYDKDRYYVPFDEVAPEESQ 171

Query: 180 IIGSLRRVMPN 212
            I  L++VMP+
Sbjct: 172 PIKFLKKVMPD 182