NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958704
Clone id TST39A01NGRL0002_L08
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_L08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAACCTACCAGTCTTGAGTCCACATGAGAATCTAAATGGCCTTTCTCACTAAGAATAAA
GGAGCTGCAACCTTGCTATCTGCTATCTTGCTAGTAGTAGTACTTAATGCTACAACAAGC
TTGTTGAAGCAATGTGACCAAACAATTTGATGGAAGACTAGAATGACACACCTCATTTGG
AGCATCTTTGAAATCCAATCTCCAAAGCAATGCAACCTCAGAAGTGACACAAAAAGCAAT
TCTCAACAACCTTGTTGTGTGGAATCAACGGTGAAAATTGTGAATAAACAATGCTTTGCT
TTTGGATACAGAACTTTGGCCTGTCACCATCTCACAATAGATGGCAAGGCCACATCCAAA
GTCATGAATTCCTAGCTTGGTAGCTAGCTCAATGAAAATGAAGTGAGTAGAGCCAAGGTC
AAACAATATGAAAGCATCATGCTCTCTTATTTTTTCCCAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id P46023
Definition sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymnaea stagnalis
Align length 53
Score (bit) 32.3
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958704|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L08, 5'
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymna...    32   1.0  
sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norv...    30   6.6  
sp|Q8CHX6|MBTP2_MOUSE Membrane-bound transcription factor site-2...    30   6.6  
sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus muscu...    29   8.6  
sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapi...    29   8.6  
sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus ga...    29   8.6  

>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymnaea
           stagnalis PE=2 SV=1
          Length = 1115

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 166 THLIW-SIFEIQSPKQCNLRSDTKSNSQQPCC-----VESTVKIVNKQCFAFG 306
           TH+ W + F +   KQC+   D   NS +  C     V +  K  N QC AFG
Sbjct: 122 THVKWHNHFCVPRDKQCDFLDDCGDNSDEKICERRECVATEFKCNNSQCVAFG 174


>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus
           norvegicus GN=Rfc2 PE=2 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
 Frame = -1

Query: 359 LDVALPSIVRW*QAKVLYPKAKHCLFTIFTVDSTQQGC*ELLFVSL--------LRLHC- 207
           +DV    I  + Q KV  PK +H +  +   DS   G  + L  ++          L C 
Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167

Query: 206 FGDWISKMLQMRCVILVFHQIVWSHCFNKLVVALSTTTSKIADSKVAAPLF 54
             D I + +Q RC +L + ++  +   ++L+  +        D  + A +F
Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIF 218


>sp|Q8CHX6|MBTP2_MOUSE Membrane-bound transcription factor site-2
           protease OS=Mus musculus GN=Mbtps2 PE=2 SV=1
          Length = 515

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 303 WIQNFGLS--PSHNRWQGHIQSHEFLAW 380
           W++N GLS  P H RWQ  I +  F +W
Sbjct: 37  WLENNGLSISPFHIRWQTSIFNRAFYSW 64


>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus
           GN=Rfc2 PE=2 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
 Frame = -1

Query: 359 LDVALPSIVRW*QAKVLYPKAKHCLFTIFTVDSTQQGC*ELLFVSL--------LRLHC- 207
           +DV    I  + Q KV  PK +H +  +   DS   G  + L  ++          L C 
Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167

Query: 206 FGDWISKMLQMRCVILVFHQIVWSHCFNKLVVALSTTTSKIADSKVAAPLF 54
             D I + +Q RC +L + ++  +    +L+  +        D  + A +F
Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIF 218


>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens
           GN=RFC2 PE=1 SV=3
          Length = 354

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
 Frame = -1

Query: 359 LDVALPSIVRW*QAKVLYPKAKHCLFTIFTVDSTQQGC*ELLFVSL--------LRLHC- 207
           +DV    I  + Q KV  PK +H +  +   DS   G  + L  ++          L C 
Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172

Query: 206 FGDWISKMLQMRCVILVFHQIVWSHCFNKLVVALSTTTSKIADSKVAAPLF 54
             D I + +Q RC +L + ++  +    +L+  +        D  + A +F
Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIF 223


>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus
           gallus GN=RFC2 PE=2 SV=1
          Length = 359

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
 Frame = -1

Query: 359 LDVALPSIVRW*QAKVLYPKAKHCLFTIFTVDSTQQGC*ELLFVSL--------LRLHC- 207
           +DV    I  + Q KV  PK +H +  +   DS   G  + L  ++          L C 
Sbjct: 118 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 177

Query: 206 FGDWISKMLQMRCVILVFHQIVWSHCFNKLVVALSTTTSKIADSKVAAPLF 54
             D I + +Q RC +L + ++  S    +L+  +        D  + A +F
Sbjct: 178 ASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIF 228
tr_hit_id A7Q5G6
Definition tr|A7Q5G6|A7Q5G6_VITVI Chromosome undetermined scaffold_53, whole genome shotgun sequence OS=Vitis vinifera
Align length 29
Score (bit) 29.3
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958704|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L08, 5'
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q5G6|A7Q5G6_VITVI Chromosome undetermined scaffold_53, whol...    29   2.6  
tr|A5BGE7|A5BGE7_VITVI Putative uncharacterized protein OS=Vitis...    29   2.6  
tr|A9RKY8|A9RKY8_PHYPA SNF2 family DNA-dependent ATPase OS=Physc...    28   3.4  
tr|Q4P899|Q4P899_USTMA Putative uncharacterized protein OS=Ustil...    33   5.4  
tr|Q5JL01|Q5JL01_ORYSJ Putative rad8 (Os01g0952200 protein) OS=O...    28   5.6  
tr|B8A980|B8A980_ORYSI Putative uncharacterized protein OS=Oryza...    28   5.6  
tr|A3A1K6|A3A1K6_ORYSJ Putative uncharacterized protein OS=Oryza...    28   5.6  
tr|A3BMY0|A3BMY0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A2YPF5|A2YPF5_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|A7Q5G6|A7Q5G6_VITVI Chromosome undetermined scaffold_53, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00030933001 PE=4 SV=1
          Length = 1294

 Score = 29.3 bits (64), Expect(2) = 2.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+LV  +  N LM D ND  H+E L NP
Sbjct: 891 YNELVVTVRRNILMADWNDPSHVESLLNP 919



 Score = 25.4 bits (54), Expect(2) = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 199  SPKQCNLRSDTKSNSQQPCCVESTVKIVN 285
            +PKQ   R  T  N +  CCV   +K+ +
Sbjct: 918  NPKQWKFRISTIKNVRLSCCVAGHIKVTD 946


>tr|A5BGE7|A5BGE7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032626 PE=4 SV=1
          Length = 1208

 Score = 29.3 bits (64), Expect(2) = 2.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+LV  +  N LM D ND  H+E L NP
Sbjct: 797 YNELVVTVRRNILMADWNDPSHVESLLNP 825



 Score = 25.4 bits (54), Expect(2) = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 199 SPKQCNLRSDTKSNSQQPCCVESTVKIVN 285
           +PKQ   R  T  N +  CCV   +K+ +
Sbjct: 824 NPKQWKFRISTIKNVRLSCCVAGHIKVTD 852


>tr|A9RKY8|A9RKY8_PHYPA SNF2 family DNA-dependent ATPase
           OS=Physcomitrella patens subsp. patens GN=CHR1501 PE=4
           SV=1
          Length = 1128

 Score = 28.5 bits (62), Expect(2) = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 199 SPKQCNLRSDTKSNSQQPCCVESTVKI 279
           +PKQ   RS T  N++  CCV   +K+
Sbjct: 798 NPKQWKFRSSTLRNTRLSCCVAGHIKV 824



 Score = 25.8 bits (55), Expect(2) = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+LV  +  N L+ D  D  H+E L NP
Sbjct: 771 YNELVVTVQRNILLADWRDPSHVESLLNP 799


>tr|Q4P899|Q4P899_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03664.1 PE=4 SV=1
          Length = 642

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
 Frame = -1

Query: 236 LFVSLLRLHCFGDWISKMLQMRCVILVFHQIVWSHCFNKLVVA---LSTTTSKIADSKVA 66
           +F SLLRL C  D  ++ML  +  +L   QIV   C   LV A   L T      DSKV+
Sbjct: 261 IFCSLLRLDCIADDETRMLAKQ--LLENRQIVSERCIELLVKAEMDLQTCKDYQDDSKVS 318

Query: 65  A-----PLFLVRKAI*ILMWTQD 12
                  L  V + + I  W +D
Sbjct: 319 GLTRDEALEFVERVVDIFAWHKD 341


>tr|Q5JL01|Q5JL01_ORYSJ Putative rad8 (Os01g0952200 protein)
           OS=Oryza sativa subsp. japonica GN=P0431G06.4 PE=4 SV=1
          Length = 1298

 Score = 27.7 bits (60), Expect(2) = 5.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+L   +  N LM D ND  H+E L NP
Sbjct: 896 YNELAVTIRRNILMADWNDPSHVESLLNP 924



 Score = 25.8 bits (55), Expect(2) = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 199  SPKQCNLRSDTKSNSQQPCCVESTVKI 279
            +PKQ   R+ T  N +  CCV   +K+
Sbjct: 923  NPKQWKFRTTTIKNVRLSCCVAGHIKV 949


>tr|B8A980|B8A980_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05224 PE=4 SV=1
          Length = 1298

 Score = 27.7 bits (60), Expect(2) = 5.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+L   +  N LM D ND  H+E L NP
Sbjct: 896 YNELAVTIRRNILMADWNDPSHVESLLNP 924



 Score = 25.8 bits (55), Expect(2) = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 199  SPKQCNLRSDTKSNSQQPCCVESTVKI 279
            +PKQ   R+ T  N +  CCV   +K+
Sbjct: 923  NPKQWKFRTTTIKNVRLSCCVAGHIKV 949


>tr|A3A1K6|A3A1K6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004678 PE=4 SV=1
          Length = 1274

 Score = 27.7 bits (60), Expect(2) = 5.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 197
           YN+L   +  N LM D ND  H+E L NP
Sbjct: 872 YNELAVTIRRNILMADWNDPSHVESLLNP 900



 Score = 25.8 bits (55), Expect(2) = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 SPKQCNLRSDTKSNSQQPCCVESTVKI 279
           +PKQ   R+ T  N +  CCV   +K+
Sbjct: 899 NPKQWKFRTTTIKNVRLSCCVAGHIKV 925


>tr|A3BMY0|A3BMY0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024402 PE=4 SV=1
          Length = 1213

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 73  LLSAILLVVVLNATTSLLKQCDQTI*WKTRMTHLIWSIFEIQSPKQCNLRSDTK-SNSQQ 249
           LL A+ + +V N  +     C +      R T+LIW I    S      R DT  S +QQ
Sbjct: 602 LLPALGMSIVNNLASGDENNCVEI----HRETNLIWKIIGFTS-----FRGDTTTSEAQQ 652

Query: 250 PCCVESTVKIVNKQCFAFGYRTLACHHLTIDGKATSKV 363
              V+S+VK++ +     G   +A  +L IDG    ++
Sbjct: 653 WVLVKSSVKVLQRLTSIGGEIGIALRNLAIDGDTRQEI 690


>tr|A2YPF5|A2YPF5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27148 PE=4 SV=1
          Length = 1213

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 73  LLSAILLVVVLNATTSLLKQCDQTI*WKTRMTHLIWSIFEIQSPKQCNLRSDTK-SNSQQ 249
           LL A+ + +V N  +     C +      R T+LIW I    S      R DT  S +QQ
Sbjct: 602 LLPALGMSIVNNLASGDENNCVEI----HRETNLIWKIIGFTS-----FRGDTTTSEAQQ 652

Query: 250 PCCVESTVKIVNKQCFAFGYRTLACHHLTIDGKATSKV 363
              V+S+VK++ +     G   +A  +L IDG    ++
Sbjct: 653 WVLVKSSVKVLQRLTSIGGEIGIALRNLAIDGDTRQEI 690