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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958709
Clone id TST39A01NGRL0002_L13
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_L13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCTCCCTCTCTGCGCGCGCGCGTTTGTGTGTATGTGGGGGTTTACACAAAACCTCCCCTA
ATAAACTACACCTCGGGTTTTCTTACAATCGCACACACTGTCCGCCCTTTTTCCTGCTAC
CATGCAGCGCTTTCATCTCCCTCTCTCTGCTCTGCTCCTCTTCCTCTCTCTCTGCAGCTT
CCATGGCGACCTTGCTCACGCACAGGACTTCAACTTCCCTACCGGGCGCAACCTCACCAC
GGGGTCTCTCACTTCTCTGAAGAACGGGGTTGTGGATTCCACAGGCACCCTCATCCTGGA
CGCCAGCACAGGCGAAGCACAGGCATTCTATGAATCGCCCGTCACTTTATACGATACTAT
AAGCGGCTCTGTGCACTCCTTTTCCACGTTCTTCACCTTCTCCTCGAACGCGACGAACGG
GAATGGGACGGTGGCGTTCGTGGTGGTGCCCGACGCGGCCACGGTGGGGGGCATTGCGGG
GGCAAGGAGCACATTTACCATTGAATTCAACACGTCCTGCGGAACAGGGGAATATAATAA
CAGTGATTGGTTCTATGGAGGGCATGCATATCCAGGATCAGGACGGGGACTGGGGGGTAG
AGGAGGAAGAGGCAGAGGAAGGCTTGGGGGTTTCCAAGTAGTGGAGTATGCAAACAATAC
C
■■Homology search results ■■ -
sp_hit_id Q9VW47
Definition sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12 OS=Drosophila melanogaster
Align length 97
Score (bit) 34.3
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958709|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L13, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcriptio...    34   0.60 
sp|P23219|PGH1_HUMAN Prostaglandin G/H synthase 1 OS=Homo sapien...    32   3.9  
sp|P19588|LEC5_DOLBI Lectin DB58 OS=Dolichos biflorus PE=1 SV=2        32   3.9  
sp|P16270|LECN_PEA Non-seed lectin OS=Pisum sativum PE=2 SV=2          31   5.1  
sp|Q8N0Z3|CCD52_HUMAN Coiled-coil domain-containing protein 52 O...    31   6.7  

>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription
           subunit 12 OS=Drosophila melanogaster GN=kto PE=1 SV=2
          Length = 2531

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 197 HAQDFNFPTGRNLTTGSLTSLKNGVVD--STGTLILDASTGEAQAFYESPVTLYDTISGS 370
           + Q+ +  +    T+GSLT+  NG     STGT  +++ TG + +    PV    +    
Sbjct: 202 YQQNHDKSSSNGTTSGSLTAAGNGPASNGSTGTSSINSVTGSSASTNVIPVPSMASPLPP 261

Query: 371 VHXXXXXXXXXXNATNGNGTVAFVVVPDAATVGGIAG 481
           +H           A  G G  A  V+P   ++GG+ G
Sbjct: 262 IHSPANGQ----QAAPGGGVNAGSVMPTTGSLGGVVG 294


>sp|P23219|PGH1_HUMAN Prostaglandin G/H synthase 1 OS=Homo sapiens
           GN=PTGS1 PE=1 SV=1
          Length = 599

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 620 FLCLFLLYPPVPVLILDMHALHRTNHCYYIP 528
           FL   LL PP+PVL+ D  A    N C Y P
Sbjct: 9   FLLFLLLLPPLPVLLADPGAPTPVNPCCYYP 39


>sp|P19588|LEC5_DOLBI Lectin DB58 OS=Dolichos biflorus PE=1 SV=2
          Length = 275

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
 Frame = +2

Query: 320 QAFYESPVTLYDTISGSVHXXXXXXXXXXNATNGNGT---VAFVVVP---DAATVGGIAG 481
           +AFY SP+ +YD  +G+V            A N + +   +AF +VP   +  +  G  G
Sbjct: 69  RAFYSSPIQIYDKSTGAVASWATSFTANIFAPNKSSSADGIAFALVPVGSEPKSNSGFLG 128

Query: 482 ---------ARSTFTIEFNTSCGTGEYNNSDW 550
                    +  T  +EF+T      ++N+DW
Sbjct: 129 VFDSDVYDNSAQTVAVEFDT------FSNTDW 154


>sp|P16270|LECN_PEA Non-seed lectin OS=Pisum sativum PE=2 SV=2
          Length = 265

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = +2

Query: 200 AQDFNFPT---GRNLTT--GSLTSLKNGVVDSTGTLILDAST---GEAQAFYESPVTLYD 355
           A  FNFP    G    T  G+   L NGV+  T +  +  +T      +A Y +PV L+D
Sbjct: 26  ALSFNFPKITPGNTAITLQGNAKILANGVLALTNSTQIPPTTTFPSTGRALYSTPVPLWD 85

Query: 356 TISGSVHXXXXXXXXXXNATNG----NGTVAFVVVPD 454
           + +G+V              +G    +G V F+  PD
Sbjct: 86  SATGNVASFVTSFSFVILNPSGRVPTDGLVFFIAPPD 122


>sp|Q8N0Z3|CCD52_HUMAN Coiled-coil domain-containing protein 52
           OS=Homo sapiens GN=CCDC52 PE=1 SV=1
          Length = 855

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 561 PP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTV 460
           PP  +S L +SP+ QDVL   V    AP +PPTV
Sbjct: 538 PPRQKSNLKFSPL-QDVLRRTVQTRPAPRLPPTV 570
tr_hit_id B8AXJ4
Definition tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 120
Score (bit) 38.5
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958709|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L13, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.37 
tr|Q6L4L2|Q6L4L2_ORYSJ Os05g0125200 protein OS=Oryza sativa subs...    38   0.49 
tr|A3AZI1|A3AZI1_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.49 
tr|B4MR63|B4MR63_DROWI GK22008 OS=Drosophila willistoni GN=GK220...    37   1.1  
tr|B0XA36|B0XA36_CULQU Putative uncharacterized protein OS=Culex...    35   3.2  
tr|Q9AQG4|Q9AQG4_9FIRM CelE OS=Caldicellulosiruptor sp. Tok7B.1 ...    34   7.1  
tr|Q82GM0|Q82GM0_STRAW Putative sensor-like histidine kinase OS=...    34   9.2  
tr|Q4Q2X5|Q4Q2X5_LEIMA Putative uncharacterized protein OS=Leish...    34   9.2  
tr|B6YTA6|B6YTA6_THEON Stetterlysin OS=Thermococcus onnurineus (...    34   9.2  

>tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18274 PE=4 SV=1
          Length = 745

 Score = 38.5 bits (88), Expect = 0.37
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +2

Query: 188 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 352
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 5   DVSTALRFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 59

Query: 353 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 514
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 60  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 116


>tr|Q6L4L2|Q6L4L2_ORYSJ Os05g0125200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0079L11.5 PE=4 SV=1
          Length = 771

 Score = 38.1 bits (87), Expect = 0.49
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +2

Query: 188 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 352
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 31  DVSTALCFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 85

Query: 353 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 514
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 86  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 142


>tr|A3AZI1|A3AZI1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016203 PE=4 SV=1
          Length = 584

 Score = 38.1 bits (87), Expect = 0.49
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +2

Query: 188 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 352
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 27  DVSTALCFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 81

Query: 353 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 514
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 82  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 138


>tr|B4MR63|B4MR63_DROWI GK22008 OS=Drosophila willistoni GN=GK22008
           PE=4 SV=1
          Length = 692

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -2

Query: 549 QSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVPFPFVAFEEKVKNVEKECT 370
           +SLL  +PVP+   N    V+  P MPP V   G++  + V  P     E V N  +EC 
Sbjct: 363 RSLLRLAPVPEKP-NRKAQVIFNPLMPPPVPILGSSQYSNVESPLELQAEAVLNTAEECF 421

Query: 369 E 367
           E
Sbjct: 422 E 422


>tr|B0XA36|B0XA36_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ016327 PE=4 SV=1
          Length = 402

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 504 SMVNVLLAPAMPPTVAASGTTTNATVPFPF 415
           SM N  L P  PPT  A+ TTT +T P PF
Sbjct: 99  SMKNYKLGPTAPPTTTAATTTTTSTTPQPF 128


>tr|Q9AQG4|Q9AQG4_9FIRM CelE OS=Caldicellulosiruptor sp. Tok7B.1 PE=4
            SV=1
          Length = 1751

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = +2

Query: 230  NLTTGSLTSLKNGVV--DSTGTLILDASTGEAQAFY--ESPVTLYDTISGSVHXXXXXXX 397
            N   GS+T++ N  +  ++ GT  +D S  + + +Y  +   T   +++ S++       
Sbjct: 1044 NGNLGSMTNVLNPKIKIENVGTTAVDLSRVKVRYWYTIDGEATQSVSVTSSINPAYIDVK 1103

Query: 398  XXXNATNGNGTVAFVVVPDAATVGGIAGARSTFTIEFNTSCGTGEYNNSD 547
                  N  G   +V +   +  G +A  +ST  I  +   G+G YN S+
Sbjct: 1104 FVKLGANAGGADYYVEIGFKSGAGVLAAGQSTKEIRLSIQKGSGSYNQSN 1153


>tr|Q82GM0|Q82GM0_STRAW Putative sensor-like histidine kinase
           OS=Streptomyces avermitilis GN=cvnA9 PE=4 SV=1
          Length = 746

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = -2

Query: 525 VPQDVLNSMVNV--LLAPAMPPTVAASGTTTNATVPFPFVAFEEKVKNVEKECTEPLIVS 352
           +PQD+L+++  V    APA P T AA+ TTT AT   P         + +   T+     
Sbjct: 439 IPQDILSTVPAVPPAPAPAQPVTAAAAATTTAATAVEPAATDPAVATSTDATSTD----- 493

Query: 351 YKVTGDS*NACASPVLASRMRVPVESTTPFFREVRDP 241
              T D+  A A P  A     P     P +   R P
Sbjct: 494 -ATTPDASPATAPPAAAPPAAAP-SRPLPSYAAARSP 528


>tr|Q4Q2X5|Q4Q2X5_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF34.2250 PE=4 SV=1
          Length = 1931

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -2

Query: 480  PAMP-PTVAASGTTTNATVPFPFVAFEEKVKNVEKECTEPLIVSYKVTGDS*NACASPVL 304
            P +P P V +S TTT A +P P +AF+          +     S   +G S  A A+ + 
Sbjct: 1228 PQLPVPAVMSSHTTTAAAIPGPTLAFQSSPSGASSSSSSGSSRSSSSSGSSGPAAATVMR 1287

Query: 303  ASRMRVPVESTTPF 262
               +++P   + PF
Sbjct: 1288 GPSLQLPPGGSLPF 1301


>tr|B6YTA6|B6YTA6_THEON Stetterlysin OS=Thermococcus onnurineus
           (strain NA1) GN=TON_0308 PE=4 SV=1
          Length = 1414

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +2

Query: 254 SLKNGVVDSTGTLILDASTGEAQAFYESPVTLYDTISGSVHXXXXXXXXXXNATNGNGTV 433
           ++ N   D TG + L   TGE   F  S V +      + +          + T+ +GTV
Sbjct: 316 NMNNNFTDDTG-VGLYTETGEYFTFNTSLVNVAFAEFMAPYYAMFMWDAHGHGTHVSGTV 374

Query: 434 AFVVVPDAATVGGIAG-ARSTFTIEFNTSCGTGEYNNSDWFYGGHAY 571
           A V +PD    GG+ G A +   +E     G   +  + W  GG  Y
Sbjct: 375 AGVGLPDDPLFGGVYGVAPNAQLMEVKVLPGEFGFGRTSWIIGGMIY 421