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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958717
Clone id TST39A01NGRL0002_L21
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_L21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGGTTTAAAAGAAGTCTTAAGAGAGCAAAGACAACTGCAAGGTTTCTAGAAGACAGCCCT
CTTGTCACTTGGAATGAAGAGTTTGAGCACACTTGCATCCTCACTCTCACCAAGGATGGC
CAGTTCTTACCTTGGGACATATGCTTTGTGGTTAATCAGGTGAACACAAAATCAAAGTCT
ATAGTTTTGGGTACAGCCTGGATGAATGTTGCCAAGTTTGTTCCAATGATTGGGAACATG
AAGCAAACAGCTAAAATACACGTTTTGACATCGAGCGGAATGAGAAGTCCAGCCAGCCTT
GTTGTAACTGCAGATTTTGTAGAGCTAAGGACATCAGAAAGCGCTGGATTTGATCATCCT
GTGTTATCATGCATAGGTGGCCCACTGTTGTGTACTGTTGATGCGCAGCTTGTGGAGGCG
GCAGCAGATGAGAAGCAGAAGGTAGCAAAGAGCTCCCCATCAAGCGAGGGGAATGACAGT
GTGTCATTTCCGAAACTGGAATCGACGTCTGATAGCTCTAGAGATTCTGTAGATTCTGAC
TCAACTGTTGAGTGGGACGGTGAGGAAGGCATCGATCCCCAAGAGCTCTATGTAAATGGC
TATGGGCCTCTCATGGGCGTAAACCTTGTTGTCGAAGGTGCTCTTTCACACTGCAAGGAG
AGCTTCC
■■Homology search results ■■ -
sp_hit_id Q9JI70
Definition sp|Q9JI70|MKKS_MOUSE McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin OS=Mus musculus
Align length 58
Score (bit) 32.7
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958717|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L21, 5'
         (667 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI70|MKKS_MOUSE McKusick-Kaufman/Bardet-Biedl syndromes put...    33   1.8  
sp|O74309|SLM9_SCHPO Histone transcription regulator slm9 OS=Sch...    32   2.3  
sp|Q99ML0|ZMY10_MOUSE Zinc finger MYND domain-containing protein...    32   4.0  
sp|Q4R6K2|ZNT1_MACFA Zinc transporter 1 OS=Macaca fascicularis G...    31   5.2  
sp|Q9Y6M5|ZNT1_HUMAN Zinc transporter 1 OS=Homo sapiens GN=SLC30...    31   5.2  
sp|Q60738|ZNT1_MOUSE Zinc transporter 1 OS=Mus musculus GN=Slc30...    30   8.8  

>sp|Q9JI70|MKKS_MOUSE McKusick-Kaufman/Bardet-Biedl syndromes
           putative chaperonin OS=Mus musculus GN=Mkks PE=2 SV=1
          Length = 570

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 315 ICSYNKAGWTSHSARCQNVYFSCLLHVPNHWNKLGNIHPGCTQNYRL*FCVHLINHKA 142
           +CS N   W      CQ       L +   W  LG    GCT+ +   +  H ++H+A
Sbjct: 375 LCSRNDTAWEELKLTCQTAMHVLQLTIKEPWVLLGG---GCTETHLAAYVRHKVHHEA 429


>sp|O74309|SLM9_SCHPO Histone transcription regulator slm9
           OS=Schizosaccharomyces pombe GN=slm9 PE=1 SV=1
          Length = 807

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
 Frame = +1

Query: 1   RFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFL----PWDICFVV----- 153
           R  +SL   KTT     DSP+      ++ +C+   T+ G FL     WD  F V     
Sbjct: 48  RIIQSLNGHKTT-HLSFDSPISCIRFTYDGSCLAVATEAGTFLYHSEKWDKAFQVLSGPA 106

Query: 154 NQVNTKSKSIVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVELRT 333
            +V    +  +L T+W  ++ +V   G   +T       +     PA  +  +      T
Sbjct: 107 YEVCWSQQGHILATSWKQISIYVKDEGLRTETIVKKTEHADSNHQPAVSIEESKEAVEST 166

Query: 334 SESAGFDHPVLSCIGG 381
           S+S+     ++  I G
Sbjct: 167 SQSSEISFKLIKVIEG 182


>sp|Q99ML0|ZMY10_MOUSE Zinc finger MYND domain-containing protein 10
           OS=Mus musculus GN=Zmynd10 PE=2 SV=1
          Length = 440

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 312 CSYNKAGWTSHSARCQNVYFSCLLHVPNHWNKLG 211
           C Y  A  +   +RCQNV++ C      HW K G
Sbjct: 394 CGYCNAEASKRCSRCQNVWYCCRECQVKHWEKHG 427


>sp|Q4R6K2|ZNT1_MACFA Zinc transporter 1 OS=Macaca fascicularis
           GN=SLC30A1 PE=2 SV=1
          Length = 505

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 344 ALSDVLSSTKSAVTTRLAGLLIPLDVKTCILAVCFM----FPIIGTNLATFIQAVPKTID 177
           A  ++++ST ++V       ++ LD   C++ VC +    +P++  +    +Q VPK ID
Sbjct: 291 AFVEIINSTHASVYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQTVPKQID 350


>sp|Q9Y6M5|ZNT1_HUMAN Zinc transporter 1 OS=Homo sapiens GN=SLC30A1
           PE=1 SV=2
          Length = 507

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 344 ALSDVLSSTKSAVTTRLAGLLIPLDVKTCILAVCFM----FPIIGTNLATFIQAVPKTID 177
           A  ++++ST ++V       ++ LD   C++ VC +    +P++  +    +Q VPK ID
Sbjct: 293 AFVEIINSTHASVYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQTVPKQID 352


>sp|Q60738|ZNT1_MOUSE Zinc transporter 1 OS=Mus musculus GN=Slc30a1
           PE=2 SV=1
          Length = 503

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -3

Query: 335 DVLSSTKSAVTTRLAGLLIPLDVKTCILAVCFM----FPIIGTNLATFIQAVPKTID 177
           ++++ST++ +       ++ LD   CI+ VC +    +P++  +    +Q VPK ID
Sbjct: 291 EIINSTQAPMRDAGPCWVLYLDPTLCIIMVCILLYTTYPLLKESALILLQTVPKQID 347
tr_hit_id A9T1E1
Definition tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 254
Score (bit) 84.7
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958717|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L21, 5'
         (667 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella paten...    85   5e-15
tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome...    60   1e-07
tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana ...    59   4e-07
tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g1176...    59   4e-07
tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11...    50   1e-04
tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subs...    44   0.007
tr|A3CJJ1|A3CJJ1_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.007
tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.007
tr|A5C4E3|A5C4E3_VITVI Putative uncharacterized protein OS=Vitis...    44   0.012
tr|Q0PHY4|Q0PHY4_SPIAU SpaV OS=Spirochaeta aurantia PE=4 SV=1          34   7.2  
tr|B7JYS3|B7JYS3_SYNP8 Cobalamin synthesis protein P47K OS=Synec...    34   9.4  
tr|B4BUY5|B4BUY5_9CHRO Cobalamin synthesis protein P47K OS=Cyano...    34   9.4  
tr|Q9SKK3|Q9SKK3_ARATH Expressed protein OS=Arabidopsis thaliana...    34   9.4  
tr|Q8W4Q2|Q8W4Q2_ARATH SYNC1 protein OS=Arabidopsis thaliana GN=...    34   9.4  

>tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_138790 PE=4 SV=1
          Length = 706

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 73/254 (28%), Positives = 104/254 (40%), Gaps = 40/254 (15%)
 Frame = +1

Query: 10  RSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFLPWDICFVVNQV---NTKSKS 180
           RS+KR KT A  +E+S  V+W+++FEH C+LT  KDG F PW +  V+ +    N+K K 
Sbjct: 58  RSMKREKTNALPVENSGSVSWDKKFEHVCVLTNDKDGVFQPWHVHLVLCEALPENSKGKV 117

Query: 181 IVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVELRTSESAGFDH- 357
            VLGT  +++        +      + V           L +T  F ELRT    GF+  
Sbjct: 118 SVLGTVILDLGALASSATSSHNPISLPVTCK---HCACELQITFSFSELRTVYETGFESV 174

Query: 358 -----PVLSCIGGPLLCTVDAQLVEAAADEKQKV-----------------------AKS 453
                P ++C+GG      +A   E   D+  KV                       AK 
Sbjct: 175 HRLVAPAMACMGG------NAHTWEPEGDDVVKVHPDPEKKKKSSKELSREHVLGLKAKR 228

Query: 454 SPSSEGNDSVSFPKLEXXXXXXXXXXXXXXXXEWDGEEGIDP--QELYV------NGYGP 609
           +   E  D     K                  +W  +  ++   +E+ V       GYG 
Sbjct: 229 NLQVEDVDPTDTGKFSPRSVGSIQDGLDLFDSDWVDDSDVEEYGEEVEVVNIGQFVGYGT 288

Query: 610 LMGVNLVVEGALSH 651
           L GVNLVVEGAL H
Sbjct: 289 LAGVNLVVEGALPH 302


>tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027182001
           PE=4 SV=1
          Length = 715

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
 Frame = +1

Query: 7   KRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFLPWDICFVV---NQVNTKSK 177
           +R++KR  T    +    +V W+EEF+  C L+  KD  F PW+I F V   +    K+K
Sbjct: 61  RRTVKRNFTKEEDVGQDGVVLWDEEFQSVCNLSAYKDNVFHPWEIAFTVLNGSHQGPKNK 120

Query: 178 SIVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPASLV-VTADFVELRTSE 339
             V+GTA +N+A+F       +    I +    G   P  L+ ++   +ELRT++
Sbjct: 121 VPVVGTASLNIAEFASAAEEKEFELNIPLTLPGGAAEPHPLLCISLSLLELRTAQ 175


>tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
           GN=At3g11760 PE=4 SV=1
          Length = 702

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
 Frame = +1

Query: 7   KRSLKRAKTTARFLEDSPLVTW-NEEFEHTCILTLTKDGQFLPWDICFVV----NQVNTK 171
           +RS+KR   T   + +S +V+W +EEF+  C LT  KD  F PW+I F V     +   K
Sbjct: 61  RRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYKDSLFYPWEITFSVFTNGMKQGQK 119

Query: 172 SKSIVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPAS--LVVTADFVELRTSESA 345
           +K+ V+GTA++N+A++  +    +    I +  S+ + S     L V+   +ELRT+   
Sbjct: 120 NKAPVVGTAFLNLAEYACVTDKKEFDINIPLTLSACVASETHPLLFVSLSLLELRTTPET 179

Query: 346 GFDHPVLSCIGGPLLCTVDAQLVEAAADEKQKVA 447
                  + +  PL      Q  E  + EK+ V+
Sbjct: 180 SDSAAQTAVVPLPLPSPSPQQPTETHSVEKEDVS 213


>tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g11760
           OS=Arabidopsis thaliana GN=At3g11760 PE=2 SV=1
          Length = 394

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
 Frame = +1

Query: 7   KRSLKRAKTTARFLEDSPLVTW-NEEFEHTCILTLTKDGQFLPWDICFVV----NQVNTK 171
           +RS+KR   T   + +S +V+W +EEF+  C LT  KD  F PW+I F V     +   K
Sbjct: 61  RRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYKDSLFYPWEITFSVFTNGMKQGQK 119

Query: 172 SKSIVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPAS--LVVTADFVELRTSESA 345
           +K+ V+GTA++N+A++  +    +    I +  S+ + S     L V+   +ELRT+   
Sbjct: 120 NKAPVVGTAFLNLAEYACVTDKKEFDINIPLTLSACVASETHPLLFVSLSLLELRTTPET 179

Query: 346 GFDHPVLSCIGGPLLCTVDAQLVEAAADEKQKVA 447
                  + +  PL      Q  E  + EK+ V+
Sbjct: 180 SDSAAQTAVVPLPLPSPSPQQPTETHSVEKEDVS 213


>tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11
           OS=Arabidopsis thaliana GN=At5g04860 PE=4 SV=1
          Length = 782

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
 Frame = +1

Query: 7   KRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFLPWDICFVV----NQVNTKS 174
           KRS+ R  T         +V WNEEF+  C  ++ K+G FLPW +   V    NQ  +K 
Sbjct: 75  KRSVVRNLTEEGGFRGDGVVEWNEEFKRVCEFSVYKEGSFLPWFVSLTVFSGLNQ-GSKE 133

Query: 175 KSIVLGTAWMNVAKFVPMIGNMKQTAKIHV--LTSSGMRSP 291
           K    G A +N+A++  ++       K+ +    SS +RSP
Sbjct: 134 KVRSFGKASLNIAEYFSLMKEDDVQVKVPLKDCDSSSVRSP 174


>tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0620600 PE=2 SV=1
          Length = 753

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
 Frame = +1

Query: 64  VTWNEEFEHTCILTLT---KDGQ-FLPWDICF--VVNQVNTKSKS-IVLGTAWMNVAKFV 222
           V W EEFE     T T   K G  F PWD+ F   VN  N   K  ++LGTA +N+A++ 
Sbjct: 81  VAWEEEFERVETFTATSHRKSGAAFHPWDLAFSVFVNDSNKGPKGELILGTASLNLAEYT 140

Query: 223 PMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVELRTSESAGFDHPVLSCIGGPLLCTVD 402
                ++    + V   S   SP SL +T   VEL     +  D    S +  P L    
Sbjct: 141 SASEEVEIILPLSVPNGSSESSP-SLHLTLSLVELGPPHQSP-DASQRSAVTAP-LSPSS 197

Query: 403 AQLVEAAADEKQKVAKS 453
              V ++ DE   V K+
Sbjct: 198 GDSVPSSKDEVSSVIKA 214


>tr|A3CJJ1|A3CJJ1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035463 PE=4 SV=1
          Length = 751

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
 Frame = +1

Query: 64  VTWNEEFEHTCILTLT---KDGQ-FLPWDICF--VVNQVNTKSKS-IVLGTAWMNVAKFV 222
           V W EEFE     T T   K G  F PWD+ F   VN  N   K  ++LGTA +N+A++ 
Sbjct: 79  VAWEEEFERVETFTATSHRKSGAAFHPWDLAFSVFVNDSNKGPKGELILGTASLNLAEYT 138

Query: 223 PMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVELRTSESAGFDHPVLSCIGGPLLCTVD 402
                ++    + V   S   SP SL +T   VEL     +  D    S +  P L    
Sbjct: 139 SASEEVEIILPLSVPNGSSESSP-SLHLTLSLVELGPPHQSP-DASQRSAVTAP-LSPSS 195

Query: 403 AQLVEAAADEKQKVAKS 453
              V ++ DE   V K+
Sbjct: 196 GDSVPSSKDEVSSVIKA 212


>tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39155 PE=4 SV=1
          Length = 749

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
 Frame = +1

Query: 64  VTWNEEFEHTCILTLT---KDGQ-FLPWDICF--VVNQVNTKSKS-IVLGTAWMNVAKFV 222
           V W EEFE     T T   K G  F PWD+ F   VN  N   K  ++LGTA +N+A++ 
Sbjct: 77  VAWEEEFERVETFTATSHRKSGAAFHPWDLAFSVFVNDSNKGPKGELILGTASLNLAEYT 136

Query: 223 PMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVELRTSESAGFDHPVLSCIGGPLLCTVD 402
                ++    + V   S   SP SL +T   VEL     +  D    S +  P L    
Sbjct: 137 SASEEVEIILPLSVPNGSSESSP-SLHLTLSLVELGPPHQSP-DASQRSAVTAP-LSPSS 193

Query: 403 AQLVEAAADEKQKVAKS 453
              V ++ DE   V K+
Sbjct: 194 GDSVPSSKDEVSSVIKA 210


>tr|A5C4E3|A5C4E3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010683 PE=4 SV=1
          Length = 597

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
 Frame = +1

Query: 64  VTWNEEFEHTCILTLT-KDGQFLPWDICFVV---NQVNTKSKSIVLGTAWMNVAKFVPMI 231
           + W++EF+  C L+++ KD    P  + F +        K+KS+VLG   +N+A+    +
Sbjct: 76  IEWHQEFDAVCSLSVSQKDHSLRPRHVSFSILHGEGRELKAKSVVLGKVSLNLAELASKM 135

Query: 232 GNMKQTAKIHVLTSSGMRSPASLVVTADFVELRTSESA 345
               QT     L  +G    A+L V+  F+ELR ++ +
Sbjct: 136 ETDIQTKLPISLQVAGXAMEATLSVSVSFMELRNAQDS 173


>tr|Q0PHY4|Q0PHY4_SPIAU SpaV OS=Spirochaeta aurantia PE=4 SV=1
          Length = 216

 Score = 34.3 bits (77), Expect = 7.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 145 FVVNQVNTKSKSIVLGTAWMNVAKFVPMIGNMKQTAKIHVLTSSGMRSPASLVVTADFVE 324
           FV+ + +  +  IVL      VA +VP + + +Q   IH+    G R P  L+   +F  
Sbjct: 81  FVIGEESVSAGPIVLLAGGTGVAPYVPFLVSQRQAGNIHLY--YGARQPEHLLFVPEFTR 138

Query: 325 LR 330
           LR
Sbjct: 139 LR 140