DK958742
Clone id TST39A01NGRL0002_M24
Library
Length 703
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_M24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCCCGTGCATGCCTAGCTTGGATGAGATCTATGCTTTGAGACAACTTAGATCTGCCCATA
CAGCGAACAGGAAGGGAGGGCGAGCATGGCGTGTTTGGCTGTATCGCTCCAGCCCGTAAA
CGGGCCAGACTTGCTACTGCAGACCAGAGAATGGTTCCCTCCTGCAAGAGGCTTGTTAGC
ATCTTCCAAGTTTAGAGAAACCCGCGAGACGTACGCAGCAGGAAAGCGCGCAGGAACATC
CCCATCGGCAACAACAGCGACAGCAGAAAACTCAGCTATGGTGGAGGGCCTTGGCGATGA
AGCCCTCGCAGCCTCTGGTGGGCATGTAATCGTTGGTAAGGAAACCAAATTTAGAGTTTT
CTATCGCCTTGTTAACAATATCTATGTGCTTGCCATTACTAGTGCGGAAAATGATCGTGA
TGATCTGCCTGCCAATGCATTTGAGTGTGCGGGTATTGTGAATCAAGCAGTTAGCGTGCT
TGTCGCAGCCTGCAAGGGCATTGATGTTACCTCTGAGAAGGTTATACGCAAATATACGGA
GATCTACATGGCTCTTGATGTAGTATTGAGAGGTGTAAGCGCAGCCCGCTTGTCCACCAT
TCTAGCTAGCATTCATGGTGAGGGTATCCCGCAAATGGTTCTTTCTGCTACAGATGCAGA
AAATCGCGCAAGGGGAGCTGAGAGTTGGTATATTGCTAAATCA
■■Homology search results ■■ -
sp_hit_id Q9FKS4
Definition sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana
Align length 60
Score (bit) 32.0
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958742|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_M24, 5'
(703 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR OS=Arabi... 32 3.3
sp|Q970U9|ARLY_SULTO Argininosuccinate lyase OS=Sulfolobus tokod... 32 4.4
sp|Q9CDP0|YWFF_LACLA Uncharacterized RNA methyltransferase ywfF ... 30 9.7
sp|Q73IW9|RPOBC_WOLPM Bifunctional DNA-directed RNA polymerase s... 30 9.7
sp|Q9SKX0|MRP11_ARATH Multidrug resistance-associated protein 11... 30 9.7

>sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR
OS=Arabidopsis thaliana GN=ATR PE=2 SV=2
Length = 2702

Score = 32.0 bits (71), Expect = 3.3
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +2

Query: 479 LVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEGIPQMVLSATDA 658
+ AAC+GI V + Y Y+ LDVV G AARLS I + +LS DA
Sbjct: 1505 IFAACRGI-VRHDMQTATYLLPYLVLDVVCHGTEAARLS----------ISEEILSVLDA 1553


>sp|Q970U9|ARLY_SULTO Argininosuccinate lyase OS=Sulfolobus tokodaii
GN=argH PE=3 SV=1
Length = 446

Score = 31.6 bits (70), Expect = 4.4
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2

Query: 377 NIYVLAITSAENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMAL 556
NIY + D ++ + ++C IVN ++ V+ + +GI+V + ++ K T +A
Sbjct: 297 NIYKGLPSGYNLDLQEMNKHYWDCVKIVNSSIEVINSILEGIEVLNFQLDDKTTATDVAE 356

Query: 557 DVVLRGV 577
D+ + G+
Sbjct: 357 DLAITGI 363


>sp|Q9CDP0|YWFF_LACLA Uncharacterized RNA methyltransferase ywfF
OS=Lactococcus lactis subsp. lactis GN=ywfF PE=3 SV=1
Length = 513

Score = 30.4 bits (67), Expect = 9.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2

Query: 353 RVFYRL----VNNIYVLAITSAENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEK 520
R FY+L N +Y A+ + +DD +A+ G + AV+ V + G+D+T E
Sbjct: 305 RAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPES 364

Query: 521 V 523
+
Sbjct: 365 I 365


>sp|Q73IW9|RPOBC_WOLPM Bifunctional DNA-directed RNA polymerase
subunit beta-beta' OS=Wolbachia pipientis wMel GN=rpoBC
PE=3 SV=1
Length = 2837

Score = 30.4 bits (67), Expect = 9.7
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +2

Query: 359 FYRLVNNIYVLAITSAENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEKVIRKYT 538
F R + + +A E +D+ A FE AG+ N +VL C G EK RK T
Sbjct: 1262 FARKLRDGVPVAAPVFEGPKDEQIAKLFELAGLDNSGQAVLYDGCSG-----EKFDRKVT 1316

Query: 539 EIYM 550
YM
Sbjct: 1317 VGYM 1320


>sp|Q9SKX0|MRP11_ARATH Multidrug resistance-associated protein 11
OS=Arabidopsis thaliana GN=MRP11 PE=2 SV=2
Length = 1194

Score = 30.4 bits (67), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1

Query: 493 AGCDKHANCLIHNTRTLKCIGRQIITIIFRTSNGKHIDIV 374
A D H L+HNT + +C G +ITI R S +D +
Sbjct: 1122 ANIDVHTASLLHNTISSECKGVTVITIAHRISTVVDLDSI 1161


tr_hit_id A9U164
Definition tr|A9U164|A9U164_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 206
Score (bit) 251.0
E-value 4.0e-65
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958742|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_M24, 5'
(703 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U164|A9U164_PHYPA Predicted protein OS=Physcomitrella paten... 251 4e-65
tr|A7Q6E7|A7Q6E7_VITVI Chromosome chr11 scaffold_56, whole genom... 226 1e-57
tr|A5AR42|A5AR42_VITVI Putative uncharacterized protein OS=Vitis... 224 5e-57
tr|Q9FKM4|Q9FKM4_ARATH Arabidopsis thaliana genomic DNA, chromos... 213 1e-53
tr|Q6Z0T9|Q6Z0T9_ORYSJ Os08g0243900 protein OS=Oryza sativa subs... 204 6e-51
tr|A2YSV1|A2YSV1_ORYSI Putative uncharacterized protein OS=Oryza... 204 6e-51
tr|A3BR28|A3BR28_ORYSJ Putative uncharacterized protein OS=Oryza... 170 9e-41
tr|Q54E64|Q54E64_DICDI Putative uncharacterized protein OS=Dicty... 46 0.002
tr|A8HQB9|A8HQB9_CHLRE Predicted protein OS=Chlamydomonas reinha... 37 0.95
tr|B7GT46|B7GT46_BIFLO Alkaline phosphatase OS=Bifidobacterium l... 37 1.6

>tr|A9U164|A9U164_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_227387 PE=4 SV=1
Length = 631

Score = 251 bits (640), Expect = 4e-65
Identities = 133/206 (64%), Positives = 153/206 (74%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
MACLA+SLQPVNG D+LLQTREWFPPAR LA+ FR TR YA K
Sbjct: 1 MACLALSLQPVNGADVLLQTREWFPPARAALATYSFRVTRLAYANNKHDPLDG------- 53

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
+ GLGDEALAAS G V+VGKE+KFRV YRLVN +YVL ITSA+ D D N FE
Sbjct: 54 ----LGPGLGDEALAASSGQVVVGKESKFRVVYRLVNTVYVLGITSADLDDD---TNIFE 106

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
CAG VNQAVSVLVAACKG+DVT++K+ RKYTE+YMALDVVL GVSAARLSTILA+ HGE
Sbjct: 107 CAGTVNQAVSVLVAACKGVDVTADKISRKYTEVYMALDVVLHGVSAARLSTILATFHGES 166

Query: 626 IPQMVLSATDAENRARGAESWYIAKS 703
+ M+ SAT+ EN+ARGA+SW K+
Sbjct: 167 VNNMITSATEIENKARGADSWNQVKT 192


>tr|A7Q6E7|A7Q6E7_VITVI Chromosome chr11 scaffold_56, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00031365001
PE=4 SV=1
Length = 597

Score = 226 bits (575), Expect = 1e-57
Identities = 117/201 (58%), Positives = 146/201 (72%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
M+CLA+SLQP NGPD+LLQTREWFPPAR L+A S FR+TR+ +AAGK
Sbjct: 1 MSCLALSLQPANGPDILLQTREWFPPARALVALSAFRQTRQAFAAGKHQSAEDGD----- 55

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
LGD+ LAAS G +IVG E+++RV YRLVN IYVL IT+ + D N FE
Sbjct: 56 ------SSLGDDPLAASSGQLIVGVESRYRVVYRLVNGIYVLGITTVDYDLG--VNNVFE 107

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
C GIVNQAVSV+VAAC+G+DVT +K+ RKY EIYMALD+VLRGVS+ RL+ +LAS+H +
Sbjct: 108 CIGIVNQAVSVVVAACRGVDVTPDKLNRKYAEIYMALDIVLRGVSSIRLAAMLASMHSDS 167

Query: 626 IPQMVLSATDAENRARGAESW 688
I +MV SA D E++ RGAE+W
Sbjct: 168 IAKMVHSAIDTESKIRGAENW 188


>tr|A5AR42|A5AR42_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027870 PE=4 SV=1
Length = 617

Score = 224 bits (570), Expect = 5e-57
Identities = 116/201 (57%), Positives = 145/201 (72%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
M+CLA+SLQP NGPD+LLQTREWFPPAR L+A S FR+TR+ +AAGK
Sbjct: 1 MSCLALSLQPANGPDILLQTREWFPPARALVALSAFRQTRQAFAAGKHQSAEDGD----- 55

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
LGD+ LAAS G +IVG E+++RV YRLVN IYVL IT+ + D N FE
Sbjct: 56 ------SSLGDDPLAASSGQLIVGVESRYRVVYRLVNGIYVLGITTVDYDLG--VNNVFE 107

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
C GIVNQAV V+VAAC+G+DVT +K+ RKY EIYMALD+VLRGVS+ RL+ +LAS+H +
Sbjct: 108 CIGIVNQAVXVVVAACRGVDVTPDKLNRKYAEIYMALDIVLRGVSSIRLAAMLASMHSDS 167

Query: 626 IPQMVLSATDAENRARGAESW 688
I +MV SA D E++ RGAE+W
Sbjct: 168 IAKMVHSAIDTESKIRGAENW 188


>tr|Q9FKM4|Q9FKM4_ARATH Arabidopsis thaliana genomic DNA, chromosome
5, P1 clone:MUA2 (Putative uncharacterized protein
At5g57460) (At5g57460) OS=Arabidopsis thaliana
GN=At5g57460 PE=2 SV=1
Length = 646

Score = 213 bits (542), Expect = 1e-53
Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 14/220 (6%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
M+CLA++LQP NG D+LLQTREWFPPAR L+A S FR+ R+ A+ K+
Sbjct: 1 MSCLALALQPANGSDILLQTREWFPPARALIALSYFRQMRQALASSKQQHQQQSNQKQNQ 60

Query: 266 XXXXM--------------VEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITS 403
E +GD+ LAAS G VIVG E+K+RV YRLVN+IY+L +T
Sbjct: 61 ASSSSSSSSSVADPDDATAAEFVGDDPLAASNGQVIVGVESKYRVVYRLVNSIYILGVTV 120

Query: 404 AENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSA 583
A++D N FEC IVNQAVSV+V AC+G++VT EK+ RKY E+YMALD+VLRGVS
Sbjct: 121 ADHDNS---INVFECIHIVNQAVSVIVTACRGVEVTPEKLGRKYAEVYMALDIVLRGVSN 177

Query: 584 ARLSTILASIHGEGIPQMVLSATDAENRARGAESWYIAKS 703
RL+ +L ++HG+GI +MV SA D EN+ RGA+SW +S
Sbjct: 178 IRLAAMLGAMHGDGIAKMVHSALDTENKIRGADSWMAVES 217


>tr|Q6Z0T9|Q6Z0T9_ORYSJ Os08g0243900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0070J06.32 PE=2 SV=1
Length = 641

Score = 204 bits (518), Expect = 6e-51
Identities = 108/201 (53%), Positives = 140/201 (69%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
MACLA+SLQPVNGPD+LLQTR WFP +R L A S FR R A GK+
Sbjct: 1 MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLSSSSSAAAA 60

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
+E +GD+ LAA G ++VG E+++RV YRLVN+IYVL +T++ +D +AF
Sbjct: 61 AAT--LEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTS-SDHASPAVHAFA 117

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
A VNQAVSV+VAAC+G+DVT EKV RKY E+Y+ALD+VL GV + RLS ILA+IHG+
Sbjct: 118 VADAVNQAVSVVVAACRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDN 177

Query: 626 IPQMVLSATDAENRARGAESW 688
+ +MV S+ DAE +ARGA+ W
Sbjct: 178 LARMVNSSPDAEAKARGADPW 198


>tr|A2YSV1|A2YSV1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28397 PE=4 SV=1
Length = 640

Score = 204 bits (518), Expect = 6e-51
Identities = 108/201 (53%), Positives = 140/201 (69%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
MACLA+SLQPVNGPD+LLQTR WFP +R L A S FR R A GK+
Sbjct: 1 MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLSSSSAAAAA 60

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
+E +GD+ LAA G ++VG E+++RV YRLVN+IYVL +T++ +D +AF
Sbjct: 61 AT---LEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTS-SDHASPAVHAFA 116

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
A VNQAVSV+VAAC+G+DVT EKV RKY E+Y+ALD+VL GV + RLS ILA+IHG+
Sbjct: 117 VADAVNQAVSVVVAACRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDN 176

Query: 626 IPQMVLSATDAENRARGAESW 688
+ +MV S+ DAE +ARGA+ W
Sbjct: 177 LARMVNSSPDAEAKARGADPW 197


>tr|A3BR28|A3BR28_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_025500 PE=4 SV=1
Length = 622

Score = 170 bits (430), Expect = 9e-41
Identities = 97/201 (48%), Positives = 125/201 (62%)
Frame = +2

Query: 86 MACLAVSLQPVNGPDLLLQTREWFPPARGLLASSKFRETRETYAAGKRXXXXXXXXXXXX 265
MACLA+SLQPVNGPD+LLQTR WFP +R L A S FR R A GK+
Sbjct: 1 MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQ--QQLSSSSSAA 58

Query: 266 XXXXMVEGLGDEALAASGGHVIVGKETKFRVFYRLVNNIYVLAITSAENDRDDLPANAFE 445
+E +GD+ LAA G ++VG E+++RV YRLVN+IYVL +T++ +D +AF
Sbjct: 59 AAAATLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTS-SDHASPAVHAFA 117

Query: 446 CAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMALDVVLRGVSAARLSTILASIHGEG 625
A VNQAVSV+VAAC+G+DVT EKV RKY E ILA+IHG+
Sbjct: 118 VADAVNQAVSVVVAACRGVDVTPEKVHRKYPE-------------------ILATIHGDN 158

Query: 626 IPQMVLSATDAENRARGAESW 688
+ +MV S+ DAE +ARGA+ W
Sbjct: 159 LARMVNSSPDAEAKARGADPW 179


>tr|Q54E64|Q54E64_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191600 PE=4 SV=1
Length = 563

Score = 46.2 bits (108), Expect = 0.002
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +2

Query: 350 FRVFYRLVNNIYVLAITSAENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEKVIR 529
+RV+Y ++N +++LAI+ A + N FE + + +A VL + K D T+ ++ +
Sbjct: 66 YRVYYMILNELFILAISQAND-------NPFEGSIYLARAKRVLWSVSK--DFTTTQINK 116

Query: 530 KYTEIYMALDVVLRG 574
KYTE+Y AL+ VL G
Sbjct: 117 KYTEVYFALERVLFG 131


>tr|A8HQB9|A8HQB9_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_146504 PE=4 SV=1
Length = 583

Score = 37.4 bits (85), Expect = 0.95
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Frame = +2

Query: 446 CAGIVNQAVSVLVAACKG---IDVTSEKVIRKYTEIYMALDVVL-------RGVSAARLS 595
C ++ Q V V++ +G ++T+E++ RK+ E+Y+A+D +L G + AR +
Sbjct: 75 CVQLLGQVVRVVMGPAEGKAAAELTAERLQRKFGEVYLAVDALLGSGGILEAGAALARAN 134

Query: 596 TILASIH------GEGIPQMVLSATDAENR 667
L +H E P+ V A+ R
Sbjct: 135 ATLEQLHDKSKVAAEAAPKQVPKQQQAKRR 164


>tr|B7GT46|B7GT46_BIFLO Alkaline phosphatase OS=Bifidobacterium
longum subsp. infantis ATCC 15697 GN=Blon_0140 PE=3 SV=1
Length = 692

Score = 36.6 bits (83), Expect = 1.6
Identities = 32/105 (30%), Positives = 46/105 (43%)
Frame = +2

Query: 377 NIYVLAITSAENDRDDLPANAFECAGIVNQAVSVLVAACKGIDVTSEKVIRKYTEIYMAL 556
N ++L + A D+ D ANA G + + A K +D+T+ VI T +
Sbjct: 381 NGFLLQVEGASIDKQDHAANACGQIGETDDFDQAIAYAIKNVDLTNTLVI--VTADHAHT 438

Query: 557 DVVLRGVSAARLSTILASIHGEGIPQMVLSATDAENRARGAESWY 691
VL A LST+L S G MV+S A+ + AE Y
Sbjct: 439 SQVLNAQPAYALSTVLKSADGN---NMVVSYGTAQAASTDAEGGY 480