DK958755 |
Clone id |
TST39A01NGRL0002_N13 |
Library |
TST39 |
Length |
697 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_N13. 5' end sequence. |
Accession |
DK958755 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL491Contig1 |
Sequence |
GGCGTTTGTGGATCACTATTACTCCATCTTTGACACCAACCGGCCGGGCCTGGTGTCTCT CTACCAGGATGGGTCCATGCTTACGTTCGAGGGCCAGAAGCTCGCGGGCGCGCAGGCCAT CGTGAGCAAGCTCACAAGCCTCGCCTTCCAGCAGTGTAAGCACAATGTTTCAACAGTAGA CTGCCAGCTTTCTGGCCCAGGTGGTGGTATGCTCGTCTTTGTCAACGGCAACATGCAGCT TCCTGGCGAGGAGCACGCTCTCAAGTTCAGTCAGATGTTTCATTTGCTACCGAATGGAGC AGGAAGCTTTTATGTTCACAATGATATCTTCCGATTGAACTATTCGTAGAACAGGGTTTC ACATTGAGCCTTAGTTCTGAACCTGTATGGCTTGTGGTGGTGGTGGTTTTGATGATGATA GCCTTTTTTGTTGGCGCATCCTGCAGTCACTGCATTGTAGAAAAAATTCCCATTTGAGGC CTTTTCCGTGTCTCAGTTGTGTTCTGTTGTGAACATTAGCAAGATGTGATTTTGAATATT ATGTTGATTATACAATCAACGTACCTAAAAATCTTGTTAGATGAAAGTTTAGCTATATCT GAATCTGGAACTCTTGAGTCTTATTGTATGGAACGAGGTTGCTCTTTTTGTTTTGAATGT TGTAATTTCCTGATCTCTAACAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C7F5 |
Definition |
sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana |
Align length |
115 |
Score (bit) |
187.0 |
E-value |
3.0e-47 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A1YN06 |
Definition |
tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Brassica campestris |
Align length |
115 |
Score (bit) |
189.0 |
E-value |
1.0e-46 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958755|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_N13, 5' (678 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Br... 189 1e-46 tr|Q8LC75|Q8LC75_ARATH Nuclear transport factor 2, putative OS=A... 187 4e-46 tr|Q9FZK4|Q9FZK4_ARATH F17L21.10 (Similar to nuclear transport f... 187 5e-46 tr|B8LN19|B8LN19_PICSI Putative uncharacterized protein OS=Picea... 187 7e-46 tr|A9PBT2|A9PBT2_POPTR Putative uncharacterized protein OS=Popul... 183 8e-45 tr|A9PDH2|A9PDH2_POPTR Putative uncharacterized protein OS=Popul... 183 1e-44 tr|B3TLR5|B3TLR5_ELAGV Nuclear transport factor 2 OS=Elaeis guin... 181 4e-44 tr|A9SU69|A9SU69_PHYPA Predicted protein OS=Physcomitrella paten... 179 1e-43 tr|A8MS55|A8MS55_ARATH Uncharacterized protein At1g27970.2 OS=Ar... 179 2e-43 tr|A5BM29|A5BM29_VITVI Putative uncharacterized protein (Chromos... 179 2e-43 tr|B7FLL8|B7FLL8_MEDTR Putative uncharacterized protein OS=Medic... 175 3e-42 tr|A5YU15|A5YU15_PANGI Nuclear transport factor 2 OS=Panax ginse... 174 6e-42 tr|A9RIC1|A9RIC1_PHYPA Predicted protein OS=Physcomitrella paten... 170 9e-41 tr|A9SG98|A9SG98_PHYPA Predicted protein OS=Physcomitrella paten... 169 1e-40 tr|A9NQ74|A9NQ74_PICSI Putative uncharacterized protein OS=Picea... 166 1e-39 tr|Q0J463|Q0J463_ORYSJ Os08g0532300 protein OS=Oryza sativa subs... 164 4e-39 tr|A2YXF8|A2YXF8_ORYSI Putative uncharacterized protein OS=Oryza... 164 4e-39 tr|A9PE14|A9PE14_POPTR Putative uncharacterized protein OS=Popul... 164 5e-39 tr|B8LRR1|B8LRR1_PICSI Putative uncharacterized protein OS=Picea... 163 1e-38 tr|B4FC92|B4FC92_MAIZE Nuclear transport factor 2 OS=Zea mays PE... 155 3e-36 tr|A7QUM6|A7QUM6_VITVI Chromosome chr10 scaffold_179, whole geno... 147 8e-34 tr|Q8RU32|Q8RU32_ORYSJ Putative nuclear transport factor Ntf2p (... 143 9e-33 tr|B8AAH3|B8AAH3_ORYSI Putative uncharacterized protein OS=Oryza... 143 9e-33 tr|Q9LPY0|Q9LPY0_ARATH T23J18.22 OS=Arabidopsis thaliana PE=4 SV=1 131 4e-29 tr|A7TP32|A7TP32_VANPO Putative uncharacterized protein OS=Vande... 121 5e-26 tr|B6T7R2|B6T7R2_MAIZE Nuclear transport factor 2 OS=Zea mays PE... 120 1e-25 tr|A8I6D1|A8I6D1_CHLRE Predicted protein OS=Chlamydomonas reinha... 119 1e-25 tr|B8M4I2|B8M4I2_9EURO Nuclear transport factor NTF-2, putative ... 117 5e-25 tr|B6Q1C8|B6Q1C8_PENMA Nuclear transport factor NTF-2, putative ... 117 5e-25 tr|A3LPL5|A3LPL5_PICST Predicted protein OS=Pichia stipitis GN=P... 117 5e-25
>tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Brassica campestris PE=2 SV=1 Length = 123
Score = 189 bits (481), Expect = 1e-46 Identities = 89/115 (77%), Positives = 98/115 (85%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FDTNR GL YQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQCKHN+STVD Sbjct: 9 AFVEHYYSTFDTNRAGLAGFYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHNISTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIFRLNYS Sbjct: 69 CQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNYS 123
>tr|Q8LC75|Q8LC75_ARATH Nuclear transport factor 2, putative OS=Arabidopsis thaliana PE=2 SV=1 Length = 123
Score = 187 bits (476), Expect = 4e-46 Identities = 88/115 (76%), Positives = 99/115 (86%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FDTNR GL LYQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQCKH++STVD Sbjct: 9 AFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIFRLNY+ Sbjct: 69 CQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 123
>tr|Q9FZK4|Q9FZK4_ARATH F17L21.10 (Similar to nuclear transport factor 2) OS=Arabidopsis thaliana GN=At1g27310/F17L21.10 PE=2 SV=1 Length = 122
Score = 187 bits (475), Expect = 5e-46 Identities = 88/115 (76%), Positives = 102/115 (88%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FD NRPGLVSLYQ+GSMLTFEGQK+ G+Q IV+KLT L FQQCKHN++TVD Sbjct: 9 AFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHNITTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+ N G++YV NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISN-QGNYYVFNDIFRLNYA 122
>tr|B8LN19|B8LN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 123
Score = 187 bits (474), Expect = 7e-46 Identities = 85/115 (73%), Positives = 100/115 (86%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV HYY++FD+NR L LYQ+GSMLTFEG+K+ G Q+IV KLTSL FQQCKHN+STVD Sbjct: 9 AFVGHYYNLFDSNRANLAGLYQEGSMLTFEGEKIQGVQSIVGKLTSLPFQQCKHNISTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+G++QLPGE+H LKFSQMFHL+P AGS+YV NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGSLQLPGEQHQLKFSQMFHLMPTPAGSYYVFNDIFRLNYA 123
>tr|A9PBT2|A9PBT2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 183 bits (465), Expect = 8e-45 Identities = 86/115 (74%), Positives = 98/115 (85%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FD NR GL +LYQDGSMLTFEGQK G+Q IV+KL +L FQQCKH ++TVD Sbjct: 9 AFVEHYYSTFDANRAGLANLYQDGSMLTFEGQKTQGSQNIVAKLIALPFQQCKHLITTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GSFYV NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 123
>tr|A9PDH2|A9PDH2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 183 bits (464), Expect = 1e-44 Identities = 83/115 (72%), Positives = 101/115 (87%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYY++FD+NR GL +LYQD SMLTFEGQK G+Q IV+KLT+L F QCKH+++TVD Sbjct: 9 AFVEHYYNMFDSNRAGLANLYQDASMLTFEGQKTQGSQNIVAKLTALPFHQCKHHITTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GS+YV+NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSYYVYNDIFRLNYA 123
>tr|B3TLR5|B3TLR5_ELAGV Nuclear transport factor 2 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 123
Score = 181 bits (459), Expect = 4e-44 Identities = 86/115 (74%), Positives = 98/115 (85%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYY FDTNR GL SLYQ+GSMLTFEG K GAQAIV+KL SL FQQC+H +STVD Sbjct: 9 AFVEHYYRTFDTNRAGLGSLYQEGSMLTFEGAKTQGAQAIVAKLISLPFQQCQHQISTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+G++QL GE+H+LKFSQMFHL+P GSFYV NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGSLQLAGEQHSLKFSQMFHLMPTPQGSFYVLNDIFRLNYA 123
>tr|A9SU69|A9SU69_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235062 PE=4 SV=1 Length = 123
Score = 179 bits (454), Expect = 1e-43 Identities = 83/114 (72%), Positives = 97/114 (85%) Frame = +2
Query: 5 FVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVDC 184 FV+HYY+ FDTNR L++LYQ+GSMLTFEG+K+ GAQ+I +KL SL FQQCKHN+STVDC Sbjct: 10 FVEHYYTTFDTNRLALINLYQEGSMLTFEGEKIQGAQSISNKLNSLPFQQCKHNISTVDC 69
Query: 185 QLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 Q SG GG +VFV+GN+QLPGEEH LKFSQMFHL P GSFYV NDIFRLNY+ Sbjct: 70 QPSGLSGGWVVFVSGNLQLPGEEHLLKFSQMFHLAPTPQGSFYVFNDIFRLNYA 123
>tr|A8MS55|A8MS55_ARATH Uncharacterized protein At1g27970.2 OS=Arabidopsis thaliana GN=At1g27970 PE=4 SV=1 Length = 134
Score = 179 bits (453), Expect = 2e-43 Identities = 84/110 (76%), Positives = 94/110 (85%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FDTNR GL LYQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQCKH++STVD Sbjct: 12 AFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVD 71
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIF 331 CQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIF Sbjct: 72 CQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121
>tr|A5BM29|A5BM29_VITVI Putative uncharacterized protein (Chromosome chr1 scaffold_136, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00002791001 PE=4 SV=1 Length = 123
Score = 179 bits (453), Expect = 2e-43 Identities = 83/115 (72%), Positives = 98/115 (85%) Frame = +2
Query: 2 AFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQCKHNVSTVD 181 AFV+HYYS FD NR L +LYQ+ SMLTFEGQK+ G+ IV+KLTSL FQQC+H+++TVD Sbjct: 9 AFVEHYYSTFDANRANLANLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSITTVD 68
Query: 182 CQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRLNYS 346 CQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GSFYV NDIFRLNY+ Sbjct: 69 CQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 123
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