DK958774 |
Clone id |
TST39A01NGRL0002_O08 |
Library |
TST39 |
Length |
669 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_O08. 5' end sequence. |
Accession |
DK958774 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL725Contig1 |
Sequence |
GCCGAGAGGGATTCTCTAGCCACAACCAAGTAGCTTGATCGGTTCTTGGACTGGACAGTT GCAATTCGAATTGAGAGAGAGAGAAGAAGAGCGCAGAATGCCAGGTCTTCATGCCTTGCG GTCTGTTTCTTCGACGTCTTCCTCCTCATCTGCATCTTCCACTCATGCCAGGGCTGCCGC TTCTCAGAGGCCGGCCACAGTCCCTTCCGCGCCCACTCCAGTTCCTGTTACCGCTCGTGC ATTGCCTGCATTTCACAGTGCGCTCGCAAACCGTGCTGCGCCATCTTTGACTGCGCAGCC CATTTGCTTCAAGCACATCACAGATCCATTGACAAACGCTGCACAGAATCCTCGGCTCCA ACCTACCTCTACTACCACAAATTACAGCAGCAGCGGAAGTCCGCATGATGATCCCAGTAC TGTCTGCTTGGCAGCCATGGTGCATGAGTTTTTGGAGGAGGAAATGAGCGCAGCAAGTTG TGGACGCATCCGCTGCAACTGCGTGGATGCTGTATGCAGTGGTGATGATGAAGAGACTTT CCCAATGCATGATGAGCTGAAGCATGCCCAACTGCCTGATGACCATCTCTGTGAGATTCT TGAGGGGGTAACTTCTTGCTCAAGCAACCCAGAGTTGCTGCTGCTGGTGGATGTTGCCCG TGCTGTTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q68LP1 |
Definition |
sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus |
Align length |
35 |
Score (bit) |
33.9 |
E-value |
0.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TD04 |
Definition |
tr|A9TD04|A9TD04_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
81 |
Score (bit) |
61.2 |
E-value |
6.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958774|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_O08, 5' (669 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TD04|A9TD04_PHYPA Predicted protein (Fragment) OS=Physcomit... 61 6e-08 tr|A7PUJ1|A7PUJ1_VITVI Chromosome chr7 scaffold_31, whole genome... 58 5e-07 tr|B8LNR3|B8LNR3_PICSI Putative uncharacterized protein OS=Picea... 54 9e-06 tr|A7NWY1|A7NWY1_VITVI Chromosome chr5 scaffold_2, whole genome ... 50 1e-04 tr|A9PG39|A9PG39_POPTR Putative uncharacterized protein OS=Popul... 48 5e-04 tr|Q9LIJ8|Q9LIJ8_ARATH Arabidopsis thaliana genomic DNA, chromos... 48 6e-04 tr|Q84WI2|Q84WI2_ARATH Putative uncharacterized protein At3g2297... 48 6e-04 tr|Q9SIH9|Q9SIH9_ARATH Expressed protein (Putative uncharacteriz... 46 0.002 tr|Q3EBK3|Q3EBK3_ARATH Uncharacterized protein At2g38820.2 OS=Ar... 46 0.002 tr|A9S9X9|A9S9X9_PHYPA Predicted protein (Fragment) OS=Physcomit... 46 0.002 tr|A9TR24|A9TR24_PHYPA Predicted protein (Fragment) OS=Physcomit... 45 0.005 tr|A5AL14|A5AL14_VITVI Putative uncharacterized protein OS=Vitis... 42 0.026 tr|Q8S860|Q8S860_ORYSA Putative uncharacterized protein OSJNBa00... 42 0.035 tr|Q7XEK8|Q7XEK8_ORYSJ Os10g0417800 protein OS=Oryza sativa subs... 42 0.035 tr|Q8H7Y9|Q8H7Y9_ORYSJ Os03g0162500 protein OS=Oryza sativa subs... 42 0.045 tr|A2XCU3|A2XCU3_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.045 tr|A2Z7B4|A2Z7B4_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.059 tr|B6TU09|B6TU09_MAIZE Plant-specific domain TIGR01615 family pr... 41 0.077 tr|B6TMA8|B6TMA8_MAIZE Plant-specific domain TIGR01615 family pr... 41 0.077 tr|A9RV01|A9RV01_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.38 tr|A9SZ03|A9SZ03_PHYPA Predicted protein (Fragment) OS=Physcomit... 35 3.2 tr|A3C4S6|A3C4S6_ORYSJ Putative uncharacterized protein OS=Oryza... 35 5.5 tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein OS=Neiss... 35 5.6 tr|B4RPD0|B4RPD0_NEIG2 Putative uncharacterized protein OS=Neiss... 35 5.6 tr|Q4DBN4|Q4DBN4_TRYCR Putative uncharacterized protein OS=Trypa... 34 7.2 tr|B6P459|B6P459_BRAFL Putative uncharacterized protein OS=Branc... 34 7.2 tr|Q23JG0|Q23JG0_TETTH Putative uncharacterized protein OS=Tetra... 28 7.7 tr|Q08AY2|Q08AY2_XENLA LOC100158387 protein OS=Xenopus laevis GN... 34 9.4 tr|B1WBC4|B1WBC4_XENLA LOC100158426 protein OS=Xenopus laevis GN... 34 9.4 tr|B1H2P9|B1H2P9_XENTR Mib2 protein OS=Xenopus tropicalis GN=mib... 34 9.4
>tr|A9TD04|A9TD04_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_6078 PE=4 SV=1 Length = 234
Score = 61.2 bits (147), Expect = 6e-08 Identities = 34/81 (41%), Positives = 47/81 (58%) Frame = +2
Query: 413 PSTVCLAAMVHEFLEEEMSAASCGRIRCNCVDAVCSGDDEETFPMHDELKHAQLPDDHLC 592 PS+ CLAAMV+EF+E+E CGR RCNC C+GD + DE+ A L ++ L Sbjct: 1 PSSNCLAAMVYEFMEKE-EIGKCGRARCNCESGCCNGDGHAC--LEDEIAKASLGNE-LS 56
Query: 593 EILEGVTSCSSNPELLLLVDV 655 E L+ + C + E LL +V Sbjct: 57 EALQNLVPCDNEQERSLLGEV 77
>tr|A7PUJ1|A7PUJ1_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023819001 PE=4 SV=1 Length = 345
Score = 58.2 bits (139), Expect = 5e-07 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEE----EMSAASCGRIRCNCVDAVCSGDDEETFPMHDELKHAQLP 577 +PS+VCLA MV F+EE ++ CGR RCNC + C+ E+ F + Sbjct: 29 EPSSVCLAKMVQNFIEESNEKQLPPVRCGRNRCNCFNGNCTDISEDEFDFY--------- 79
Query: 578 DDHLCEILEGVTSCSSNPELLLLVDVARAV 667 CEIL+ + C+S E LL D A+ V Sbjct: 80 -GGACEILKSLVPCASIRERNLLADTAKIV 108
>tr|B8LNR3|B8LNR3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 486
Score = 53.9 bits (128), Expect = 9e-06 Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 20/139 (14%) Frame = +2
Query: 311 KHITDPLTNAAQNPRLQPXXXXXXXXXXXXPHDDPSTVCLAAMVHEFLEEE-------MS 469 K +TDPL + DP +VCLA MV+ F+EEE Sbjct: 88 KQVTDPLNEMVRARLCGDNYLETTNYGSSGSEHDPDSVCLADMVYGFMEEEDEGGMENNE 147
Query: 470 AASCGRIRCNCVDAV---CSGDDEETFPMHDELKHAQLPDD--------HLCEILEGVTS 616 +CGR RCNC++ CS ++ E + D ++ +P+D L EILEG+ S Sbjct: 148 VGNCGRSRCNCLNGTGEPCSDNNAEVESV-DGDSNSGIPEDDFNEFFSADLKEILEGLFS 206
Query: 617 CS-SNP-ELLLLVDVARAV 667 S +NP E LL + RA+ Sbjct: 207 SSINNPVEFLLHKEAVRAL 225
>tr|A7NWY1|A7NWY1_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020103001 PE=4 SV=1 Length = 272
Score = 50.1 bits (118), Expect = 1e-04 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLE---EEMSAASCGRIRCNCVDAVCSGDDEETFPMHDELKH--AQL 574 +PS+VCLA MV F+E E+ + CGR RCNC + + ++ F + Sbjct: 67 EPSSVCLAKMVQNFIEESNEKQTTVKCGRNRCNCFNGNGNDSSDDEFDGYGGFGEPIVTA 126
Query: 575 PDDHLCEILEGVTSCSSNPELLLLVDVARAV 667 ++L+G+ C+S E LL D A+ V Sbjct: 127 SSGDASDLLKGLIPCASVAERNLLADTAKIV 157
>tr|A9PG39|A9PG39_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 388
Score = 48.1 bits (113), Expect = 5e-04 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEEEMSAASCGRIRCNCVDA---VCSGDDEETFPMHDELKHAQLPD 580 +PS+VCLA MV ++EE GR RCNC + S D+ + F P Sbjct: 69 EPSSVCLAKMVQSYMEESNDKPFRGRHRCNCFNGNGNDSSDDEFDVFGNGFGESMGTAPS 128
Query: 581 DHLCEILEGVTSCSSNPELLLLVDVA 658 C+ L+ + C+S E LL D A Sbjct: 129 GDACDFLKSLIPCASVAERNLLADTA 154
>tr|Q9LIJ8|Q9LIJ8_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5 (At3g22970) OS=Arabidopsis thaliana GN=At3g22970 PE=2 SV=1 Length = 370
Score = 47.8 bits (112), Expect = 6e-04 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEE-EMSAASCGRIRCNCVDAVCSGDDEETFPMHDELKHAQLPDDH 586 +PS+VCLA MV F+EE A CGR RCNC + G ++ +L + Sbjct: 74 EPSSVCLAKMVQNFIEENNEKQAKCGRNRCNCFNGNNDGSSDD----ESDLFGGSIDGCD 129
Query: 587 LCEILEGVTSCSSNPELLLLVDVARAV 667 + L+ + C++ E LL D A+ V Sbjct: 130 ASDHLKSLIPCTTVGERNLLADAAKIV 156
>tr|Q84WI2|Q84WI2_ARATH Putative uncharacterized protein At3g22970 OS=Arabidopsis thaliana GN=At3g22970 PE=2 SV=1 Length = 370
Score = 47.8 bits (112), Expect = 6e-04 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEE-EMSAASCGRIRCNCVDAVCSGDDEETFPMHDELKHAQLPDDH 586 +PS+VCLA MV F+EE A CGR RCNC + G ++ +L + Sbjct: 74 EPSSVCLAKMVQNFIEENNEKQAKCGRNRCNCFNGNNDGSSDD----ESDLFGGSIDGCD 129
Query: 587 LCEILEGVTSCSSNPELLLLVDVARAV 667 + L+ + C++ E LL D A+ V Sbjct: 130 ASDHLKSLIPCTTVGERNLLADAAKIV 156
>tr|Q9SIH9|Q9SIH9_ARATH Expressed protein (Putative uncharacterized protein At2g38820) (Putative uncharacterized protein At2g38820; F13I13.5) OS=Arabidopsis thaliana GN=At2g38820/F13I13.5 PE=2 SV=2 Length = 288
Score = 46.2 bits (108), Expect = 0.002 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEEEMSAAS--CGRIRCNCV--DAVCSGDDEETFPMHDELKHAQLP 577 +PS+VCLA MV F+E+ CGR RCNC S DDE + Sbjct: 68 EPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGSGTESSDDE-----------TECS 116
Query: 578 DDHLCEILEGVTSCSSNPELLLLVDVAR 661 CEIL+ + C S LL DV + Sbjct: 117 SGEACEILKSLVLCKSIRVRNLLTDVTK 144
>tr|Q3EBK3|Q3EBK3_ARATH Uncharacterized protein At2g38820.2 OS=Arabidopsis thaliana GN=At2g38820 PE=4 SV=1 Length = 310
Score = 46.2 bits (108), Expect = 0.002 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Frame = +2
Query: 410 DPSTVCLAAMVHEFLEEEMSAAS--CGRIRCNCV--DAVCSGDDEETFPMHDELKHAQLP 577 +PS+VCLA MV F+E+ CGR RCNC S DDE + Sbjct: 68 EPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGSGTESSDDE-----------TECS 116
Query: 578 DDHLCEILEGVTSCSSNPELLLLVDVAR 661 CEIL+ + C S LL DV + Sbjct: 117 SGEACEILKSLVLCKSIRVRNLLTDVTK 144
>tr|A9S9X9|A9S9X9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46777 PE=4 SV=1 Length = 232
Score = 45.8 bits (107), Expect = 0.002 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Frame = +2
Query: 416 STVCLAAMVHEFLEEEMSAASCGRIRCNCVDA----VCSGDDEETFPMHDELKHAQLPDD 583 ++VCL AMV+ F+E E + CGR RCNC + CS D+ + EL Sbjct: 9 NSVCLGAMVNGFIENEADSGRCGRTRCNCESSGSLCDCSDFDDSRSSLGGELS------- 61
Query: 584 HLCEILEGVTSCSSNPELLLLVDVARAV 667 EIL + S S E L +V +A+ Sbjct: 62 ---EILLELVSNPSATERTLAAEVTKAI 86
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