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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958854
Clone id TST39A01NGRL0003_B20
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_B20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGTGTCTAAGACGAATGCGGGGAAAGACGACGCGTCAAGAATGGTAATAAACTACAAGAA
GGCCCTTCTAGAAGGCATACAAGGGAAGGTTATTGTATTGGACCAAACTATTGGGGTCTG
ATCTGCGTGCAGGTTTTCCATGTATGCTGGAGGATGAGAGGTAGTGATGGAAAAGTGAAT
GCAGATCTTTATATATGTAAAGTTGTAAATTACAGCAGTGAAATCCTGTTTGGTCTACTT
GATGCATCAATCAATGCGTGTTGCAAATCCTGTAAGCCCATGATGGATTAACCTTCCTTC
AGCTGAAAACCTGCGAGAATCCTAGCATTGCCACTTGCACATATCTTGCTTCTTGTTGTC
CAGGCATCTGCCAGCAGTGTCCGGAATGTTGTGGTGAGGGCTCTTTTGACGCCTACTAGG
CCTCTTTTTCAGCTTGGTAGCAAGTCTCAAAGCTTTTGTAGTTTAGGTGTCCAGTCCTGA
TCAATAAGTTTTTGATCCAAGATAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P55945
Definition sp|P55945|MT_PSEAM Metallothionein OS=Pseudopleuronectes americanus
Align length 27
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958854|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_B20, 5'
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55945|MT_PSEAM Metallothionein OS=Pseudopleuronectes america...    32   1.3  
sp|A5A6P5|KRA92_PANTR Keratin-associated protein 9-2 OS=Pan trog...    31   2.9  
sp|P07216|MT_PLEPL Metallothionein OS=Pleuronectes platessa GN=m...    30   4.9  
sp|Q05749|PIT1_MELGA Pituitary-specific positive transcription f...    30   8.3  
sp|Q9IB50|MT_PAGMA Metallothionein OS=Pagrus major GN=mt PE=3 SV=1     30   8.3  
sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo sa...    30   8.3  

>sp|P55945|MT_PSEAM Metallothionein OS=Pseudopleuronectes americanus
           GN=mt PE=1 SV=2
          Length = 60

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 TCENPSIATCTYLASCCPGICQQCPEC 389
           TC+N S  TCT   SCCP     CP+C
Sbjct: 19  TCKNCSCTTCT--KSCCPCCPSGCPKC 43


>sp|A5A6P5|KRA92_PANTR Keratin-associated protein 9-2 OS=Pan
           troglodytes GN=KRTAP9-2 PE=2 SV=1
          Length = 170

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 309 TCENPSIATCTYLASCCPGICQQCPECCG 395
           TC  P+  T  Y  SCC   C Q P CCG
Sbjct: 65  TCCQPTCVTSCYQPSCCSTPCCQ-PTCCG 92


>sp|P07216|MT_PLEPL Metallothionein OS=Pleuronectes platessa GN=mt
           PE=1 SV=2
          Length = 60

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 309 TCENPSIATCTYLASCCPGICQQCPEC 389
           TC+N S  TC    SCCP     CP+C
Sbjct: 19  TCKNCSCTTCN--KSCCPCCPSGCPKC 43


>sp|Q05749|PIT1_MELGA Pituitary-specific positive transcription
           factor 1 OS=Meleagris gallopavo GN=POU1F1 PE=2 SV=2
          Length = 370

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 170 PSLPLILQHTWKTCTQIRPQ*FGPIQ-*PSLVCLLEGPSCSLLPF 39
           PSLPLI+ H+   C  +       +   PS++ L++ P CS L F
Sbjct: 21  PSLPLIMHHSAAECLPVSNHATSVVSTVPSVLSLIQTPKCSHLHF 65


>sp|Q9IB50|MT_PAGMA Metallothionein OS=Pagrus major GN=mt PE=3 SV=1
          Length = 60

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 309 TCENPSIATCTY-LASCCPGICQQCPECC 392
           TC N S  TC     SCCP  C +C   C
Sbjct: 19  TCTNCSCTTCKKSCCSCCPSGCTKCASGC 47


>sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo
           sapiens GN=KRTAP17-1 PE=2 SV=1
          Length = 105

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
 Frame = +3

Query: 312 CENPSIATCTYLASCC------PGICQQCPECCGEG 401
           C       CT   +CC      PG C  C  CCG G
Sbjct: 4   CPGDCFTCCTQEQNCCEECCCQPGCCGCCGSCCGCG 39
tr_hit_id A8PEG0
Definition tr|A8PEG0|A8PEG0_BRUMA Putative uncharacterized protein OS=Brugia malayi
Align length 33
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958854|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_B20, 5'
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PEG0|A8PEG0_BRUMA Putative uncharacterized protein OS=Brugi...    35   1.5  
tr|A8NR37|A8NR37_BRUMA Putative uncharacterized protein OS=Brugi...    35   1.5  
tr|B1MZ46|B1MZ46_LEUCK Galactose mutarotase OS=Leuconostoc citre...    33   7.6  
tr|B6S319|B6S319_9BILA Ankyrin repeat containing protein OS=Phil...    33   9.9  

>tr|A8PEG0|A8PEG0_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_23395 PE=4 SV=1
          Length = 186

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 306 KTCENPSIATCTYLASCCPGICQQCPE-CCGEG 401
           ++C N S  TCT + +CC   CQQC + CCG G
Sbjct: 63  RSCCN-SCTTCTTVTTCCKTCCQQCNQSCCGCG 94


>tr|A8NR37|A8NR37_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_08005 PE=4 SV=1
          Length = 215

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 306 KTCENPSIATCTYLASCCPGICQQCPE-CCGEG 401
           ++C N S  TCT + +CC   CQQC + CCG G
Sbjct: 120 RSCCN-SCTTCTTVTTCCKTCCQQCNQSCCGCG 151


>tr|B1MZ46|B1MZ46_LEUCK Galactose mutarotase OS=Leuconostoc citreum
           (strain KM20) GN=LCK_00971 PE=4 SV=1
          Length = 292

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 103 PNYWGLICVQVFHVCWRMRGSDGKVNADLYICKVVNYSSEILFGLLDASIN 255
           P YWG     +F +  R+RG   KV  + Y      ++    F ++D S N
Sbjct: 38  PKYWGRHASNLFPIVGRLRGDQFKVAGETYFMNQHGFARNTTFDVIDQSDN 88


>tr|B6S319|B6S319_9BILA Ankyrin repeat containing protein
           OS=Philodina roseola PE=4 SV=1
          Length = 507

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 23/56 (41%), Positives = 27/56 (48%)
 Frame = -1

Query: 287 SIMGLQDLQHALIDASSRPNRISLL*FTTLHI*RSAFTFPSLPLILQHTWKTCTQI 120
           SI  L   QHA +D     N+I L  FT LH     F  P   L+L HT + C QI
Sbjct: 228 SIEYLLTHQHACLDT----NKIDLNHFTALHHTCRHFNLPLSQLLLPHTNRKCLQI 279