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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958857
Clone id TST39A01NGRL0003_B23
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_B23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAAATTTGGAACAGCTTAGGAAACATTGAAGTCCAGAAGGTCAATGTATTCTTACCAGA
TTCGGAGACATTTGGGCCAGCATTCGCAGAGGTTTGTTTTAGCAAATTTATGGAACATTT
TACTCAACTCTTTTGAGTCTTTGAACTTTCCGTTCTGATTCTTCAGGTGGAAAGTGTCCA
TGGGCTGAGTAATTTTGTGCCCGTCCTAGTTGCAGATAAGTCTATTTGCTCGGAAATCAA
TACAGTCAGGTTAAACTATATATCCTCTGCGTCATCCAATATCTGTGTCAAGTCTCTTGG
TAAGGATGTGAAAGCCTTGAGATCACAATTTGGCATGGATATACTTACTGACTTGGGCTG
GGCCTTAAAATACATCACTCGGCCTCTTCCTGTTGACAAGTTTGAACTGAGGGAAGCTTT
GATCGATCGGCTTCAAACCTTGCACTTGTTTTCTTTGGAGCATCGCTGCCATGCGGTCGC
ACGTCTTGTTCAGACAGCCGTCGGTAATTTCATTCAAGGTGGTAATGTGCGGAACACTCC
CGAAATGCTGAAGGGCATGAAAGCCTTAAATATTTCTGGTAGGCTCCATTTTTCTAAGGG
GACAGCAGTAAAAGGCCAACTCACTCCGAGATCGGCCGCCG
■■Homology search results ■■ -
sp_hit_id Q6I576
Definition sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica
Align length 166
Score (bit) 53.5
E-value 9.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958857|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_B23, 5'
         (641 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS...    54   9e-07
sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7 OS...    45   3e-04
sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS...    40   0.013
sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS...    30   8.1  
sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1 OS=Mus...    30   8.1  
sp|P12748|LUXC_VIBFI Acyl-CoA reductase OS=Vibrio fischeri GN=lu...    30   8.1  

>sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9
           OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1
          Length = 842

 Score = 53.5 bits (127), Expect = 9e-07
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
 Frame = +2

Query: 29  EVQKVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVPVL 208
           E+ ++N+     +T GPAF EV                         E++ GLSNFVP+L
Sbjct: 543 EIFRINITTSKLDTHGPAFVEV-------------------------ENMFGLSNFVPIL 577

Query: 209 VADKSICSEINTVR--LNYISSASSNICVKSLGKDVKALRSQFGMDILTDLGWALKYITR 382
           V  K +CSE+  +   L   S  SS+ C      +++ LR    +  L D+GW    + R
Sbjct: 578 VGSKHLCSELEQIHDALCGSSDISSDPC------ELRGLRQTAMLGFLIDIGW----LIR 627

Query: 383 PLPVDKFE--LREALIDRLQTLHLFSLEHRCHAVARLVQTAVGNFI 514
              +D+F+  L  A I R   +  F +++    V  ++  ++ N I
Sbjct: 628 KPSIDEFQNLLSLANIQRWICMMKFLIQNDFINVLEIIVNSLDNII 673


>sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7
           OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2
          Length = 801

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
 Frame = +2

Query: 23  NIEVQKVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVP 202
           N +  K+N+   D   FGPAF EV                         E+  GLSNF+P
Sbjct: 492 NNKFYKINIVNSDPSLFGPAFVEV-------------------------ENESGLSNFIP 526

Query: 203 VLVADKSICSEINTVRLNY-----------ISSASSNICVKSLGKDVKALRSQFGMDILT 349
           +++ D ++CSE+  +   +            + +S   C +  G+     R      +L 
Sbjct: 527 LIIGDAAVCSEMKLIEQKFNATLFPEGQEVTACSSLTCCCRDFGE-----RQSTFSGLLL 581

Query: 350 DLGWALK 370
           D+ W++K
Sbjct: 582 DIAWSVK 588


>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6
           OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1
          Length = 969

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = +2

Query: 182 GLSN-FVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFGMDILTDLG 358
           G SN F P ++A++ ICSE+  +   + SS+           D    R+Q  ++ L +LG
Sbjct: 635 GFSNGFFPFIIAEQDICSEVCELESIFESSSHEQA-------DDDNARNQ-ALEFLNELG 686

Query: 359 WALKYITRPLPVDKFELREALIDRLQTLHLFSLEHRCHAVARLV 490
           W L         DK  L    I R + L +F++E    AV +L+
Sbjct: 687 WLLHRANIISKQDKVPLASFNIWRFRNLGIFAMEREWCAVTKLL 730


>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1
           OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1
          Length = 862

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
 Frame = +2

Query: 161 LQVESVHGLSNFVPVLVADKSICSEINTVR--LNYISSASSNICVKSLGKDVKALRSQFG 334
           ++VE +   S   P +VA++ +CSEI T+   LN +S   + +       D+ A R +  
Sbjct: 501 IEVEDLDQSSLSFPFVVAEEDVCSEIRTLEHLLNLVSFDDTLV----EKNDLLASRDR-A 555

Query: 335 MDILTDLGWALK----YITRPLPVDKFELREALIDRLQTLHLFSLEHR-CHAVARLVQTA 499
           ++ L + GW L+      T   P D  E   A   R + L  F+++   C  + +L+ T 
Sbjct: 556 LNFLHEFGWFLQRSHIRATSETPKDCTEGFPAA--RFRWLLSFAVDREFCAVIKKLLDT- 612

Query: 500 VGNFIQGG---NVRNTPEML 550
                QGG   +V++T E +
Sbjct: 613 ---LFQGGVDLDVQSTVEFV 629


>sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1 OS=Mus
           musculus GN=Smg1 PE=1 SV=2
          Length = 3658

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 38  KVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVP 202
           +V V +  SET+ P F+   F KF +       V ++++ +    S+H LS+ +P
Sbjct: 735 EVAVLMKKSETYAPLFSLPSFHKFSKGLLANTLVEDVNICLQACSSLHALSSSLP 789


>sp|P12748|LUXC_VIBFI Acyl-CoA reductase OS=Vibrio fischeri GN=luxC
           PE=3 SV=3
          Length = 479

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 372 YFKAQPKSVSISM--PNCDLKAFTSLPRDLTQ----ILDDAEDI*FNLTVLISEQIDLSA 211
           Y KAQPK VS+ +   N  L   TS+ R +      I+  +    F    L+S  ID++A
Sbjct: 137 YVKAQPKGVSVHLLAGNVPLSGVTSILRAILTKNECIIKTSSSDPFTANALVSSFIDVNA 196

Query: 210 TRTGTKLLS 184
               TK +S
Sbjct: 197 DHPITKSMS 205
tr_hit_id B8LQP1
Definition tr|B8LQP1|B8LQP1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 122
Score (bit) 53.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958857|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_B23, 5'
         (641 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQP1|B8LQP1_PICSI Putative uncharacterized protein OS=Picea...    54   1e-05
tr|B8AY86|B8AY86_ORYSI Putative uncharacterized protein OS=Oryza...    54   1e-05
tr|A3B3Y6|A3B3Y6_ORYSJ Putative uncharacterized protein OS=Oryza...    54   1e-05
tr|A7NWA8|A7NWA8_VITVI Chromosome chr5 scaffold_2, whole genome ...    48   4e-04
tr|Q1KUV0|Q1KUV0_9ROSI Putative uncharacterized protein OS=Cleom...    44   0.011
tr|B8AMS0|B8AMS0_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.16 
tr|A3APF3|A3APF3_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.16 
tr|A9S893|A9S893_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.0  
tr|B4F8U1|B4F8U1_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.3  
tr|A7TTX8|A7TTX8_PHYPA SBP-domain protein 5 OS=Physcomitrella pa...    37   1.3  
tr|B5XKX8|B5XKX8_STRPZ Putative transcriptional repressor OS=Str...    36   1.7  
tr|B1QSK9|B1QSK9_CLOBU Lactose phosphotransferase system repress...    35   3.9  
tr|B4FP14|B4FP14_MAIZE Putative uncharacterized protein OS=Zea m...    34   6.6  
tr|B3RL91|B3RL91_TRIAD Putative uncharacterized protein OS=Trich...    34   6.6  

>tr|B8LQP1|B8LQP1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 997

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
 Frame = +2

Query: 35  QKVNVFLP--DSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVPVL 208
           +   +F+P  D   FGPAF EV                         E+ +G+SNF+P+L
Sbjct: 645 ESFKIFIPSTDPRLFGPAFIEV-------------------------ENEYGISNFIPIL 679

Query: 209 VADKSICSEI-----NTVRLNYISSASSNICVKSLGKDV---KALRSQFGMDILTDLGWA 364
           + DK ICSE        V+  +   ++  + + S   D+     ++ Q  +++L D+GW 
Sbjct: 680 IGDKEICSEFQMLEQEVVKSGFCCRSNHGLAIGSSNSDICEQNVVKRQSILELLLDIGWV 739

Query: 365 LK 370
           LK
Sbjct: 740 LK 741


>tr|B8AY86|B8AY86_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_19936 PE=4 SV=1
          Length = 934

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
 Frame = +2

Query: 29   EVQKVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVPVL 208
            E+ ++N+     +T GPAF EV                         E++ GLSNFVP+L
Sbjct: 608  EIFRINITTSKLDTHGPAFVEV-------------------------ENMFGLSNFVPIL 642

Query: 209  VADKSICSEINTVR--LNYISSASSNICVKSLGKDVKALRSQFGMDILTDLGWALKYITR 382
            V  K +CSE+  +   L   S  SS+ C      +++ LR    +  L D+GW    + R
Sbjct: 643  VGSKHLCSELEQIHDALCGSSDISSDPC------ELRGLRQTAMLGFLIDIGW----LIR 692

Query: 383  PLPVDKFE--LREALIDRLQTLHLFSLEHRCHAVARLVQTAVGNFI 514
               +D+F+  L  A I R   +  F +++    V  ++  ++ N I
Sbjct: 693  KPSIDEFQNLLSLANIQRWICMMKFLIQNDFINVLEIIVNSLDNII 738


>tr|A3B3Y6|A3B3Y6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_017758 PE=4 SV=1
          Length = 898

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
 Frame = +2

Query: 29   EVQKVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVPVL 208
            E+ ++N+     +T GPAF EV                         E++ GLSNFVP+L
Sbjct: 618  EIFRINITTSKLDTHGPAFVEV-------------------------ENMFGLSNFVPIL 652

Query: 209  VADKSICSEINTVR--LNYISSASSNICVKSLGKDVKALRSQFGMDILTDLGWALKYITR 382
            V  K +CSE+  +   L   S  SS+ C      +++ LR    +  L D+GW    + R
Sbjct: 653  VGSKHLCSELEQIHDALCGSSDISSDPC------ELRGLRQTAMLGFLIDIGW----LIR 702

Query: 383  PLPVDKFE--LREALIDRLQTLHLFSLEHRCHAVARLVQTAVGNFI 514
               +D+F+  L  A I R   +  F +++    V  ++  ++ N I
Sbjct: 703  KPSIDEFQNLLSLANIQRWICMMKFLIQNDFINVLEIIVNSLDNII 748


>tr|A7NWA8|A7NWA8_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019851001
           PE=4 SV=1
          Length = 803

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
 Frame = +2

Query: 11  NSLGNIEVQKVNVFLPDSE--TFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHG 184
           ++ G+++ +   +++P +E   FGPAF EV                         E+ HG
Sbjct: 485 DTAGSLDHEFCKIYIPHTEPNAFGPAFIEV-------------------------ENDHG 519

Query: 185 LSNFVPVLVADKSICSEINTVRLNYISSASSNICVKS---LGKD------VKALRSQFGM 337
           LSNF+P+ + DK ICSE+  ++  +     +++C K      KD      V  L      
Sbjct: 520 LSNFIPIFIGDKEICSEMKILQHRF----DASLCSKGSQFFAKDPSDSCKVSVLGQTAFS 575

Query: 338 DILTDLGWALK 370
           + + D+ W LK
Sbjct: 576 EFILDIAWILK 586


>tr|Q1KUV0|Q1KUV0_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 753

 Score = 43.5 bits (101), Expect = 0.011
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
 Frame = +2

Query: 29  EVQKVNVFLPDSETFGPAFAEVCFSKFMEHFTQLF*VFELSVLILQVESVHGLSNFVPVL 208
           ++ K+NV   D   FGPAF EV                         E+  GLSNF+P++
Sbjct: 448 KLYKINVVNSDPNLFGPAFVEV-------------------------ENESGLSNFIPLI 482

Query: 209 VADKSICSEINTVRLNY---------ISSASSNICVKSLGKDVKALRSQFGMDILTDLGW 361
           + D++ICSE+  +   +         + +  S  C      D +  ++ F   +L D+ W
Sbjct: 483 IGDEAICSEMKLIEQKFNATLFPDGRVGACCSFTCCCG---DFEQRQTAFS-GLLLDIAW 538

Query: 362 ALK 370
           ++K
Sbjct: 539 SVK 541


>tr|B8AMS0|B8AMS0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14197 PE=4 SV=1
          Length = 794

 Score = 39.7 bits (91), Expect = 0.16
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = +2

Query: 182 GLSN-FVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFGMDILTDLG 358
           G SN F P ++A++ ICSE+  +   + SS+           D    R+Q  ++ L +LG
Sbjct: 460 GFSNGFFPFIIAEQDICSEVCELESIFESSSHEQA-------DDDNARNQ-ALEFLNELG 511

Query: 359 WALKYITRPLPVDKFELREALIDRLQTLHLFSLEHRCHAVARLV 490
           W L         DK  L    I R + L +F++E    AV +L+
Sbjct: 512 WLLHRANIISKQDKVPLASFNIWRFRNLGIFAMEREWCAVTKLL 555


>tr|A3APF3|A3APF3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012675 PE=4 SV=1
          Length = 997

 Score = 39.7 bits (91), Expect = 0.16
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = +2

Query: 182 GLSN-FVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFGMDILTDLG 358
           G SN F P ++A++ ICSE+  +   + SS+           D    R+Q  ++ L +LG
Sbjct: 663 GFSNGFFPFIIAEQDICSEVCELESIFESSSHEQA-------DDDNARNQ-ALEFLNELG 714

Query: 359 WALKYITRPLPVDKFELREALIDRLQTLHLFSLEHRCHAVARLV 490
           W L         DK  L    I R + L +F++E    AV +L+
Sbjct: 715 WLLHRANIISKQDKVPLASFNIWRFRNLGIFAMEREWCAVTKLL 758


>tr|A9S893|A9S893_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182261 PE=4 SV=1
          Length = 499

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 30/96 (31%), Positives = 43/96 (44%)
 Frame = +2

Query: 155 LILQVESVHGLSNFVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFG 334
           + ++VE+   LSN + VLV D   C+E+ ++ L Y SS  +                   
Sbjct: 271 VFIEVENEDRLSNIMVVLVGDAEFCNEVESMEL-YTSSCEA------------------- 310

Query: 335 MDILTDLGWALKYITRPLPVDKFELREALIDRLQTL 442
            D+L DLGW LK  T    V        LI RL++L
Sbjct: 311 QDLLFDLGWMLKESTLDSGV--------LIQRLRSL 338


>tr|B4F8U1|B4F8U1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 469

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
 Frame = +2

Query: 161 LQVESVHGLSNFVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFGMD 340
           ++VE     + F P ++A+K +C+E++ +   + SS++ +           A      ++
Sbjct: 130 IEVEDSGFSNGFFPFIIAEKDVCAEVSELESIFESSSNEH-----------ANARDQALE 178

Query: 341 ILTDLGWALKYITRPLPVDKFELREALID--RLQTLHLFSLEHRCHAVARLV 490
            L +LGW L    R    D+ +   A  +  R + L +F++E    AV +++
Sbjct: 179 FLNELGWLLHRANRMSKEDETDTSLAPFNMWRFRNLGVFAMEREWCAVIKML 230


>tr|A7TTX8|A7TTX8_PHYPA SBP-domain protein 5 OS=Physcomitrella
           patens PE=2 SV=1
          Length = 629

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = +2

Query: 155 LILQVESVHGLSNFVPVLVADKSICSEINTVRLNYISSASSNICVKSLGKDVKALRSQFG 334
           + ++VE+   LSN + VLV D   C+E+ ++ L Y SS  +                   
Sbjct: 574 VFIEVENEDRLSNIMVVLVGDAEFCNEVESMEL-YTSSCEA------------------- 613

Query: 335 MDILTDLGWALKYIT 379
            D+L DLGW LK  T
Sbjct: 614 QDLLFDLGWMLKEST 628