DK958878 |
Clone id |
TST39A01NGRL0003_C20 |
Library |
TST39 |
Length |
667 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_C20. 5' end sequence. |
Accession |
DK958878 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2566Contig1 |
Sequence |
CTTTATCCCATCTTTAGAAAGGCTTCATCAGCCTGTTGCTTGCCTATATTGTCATAGTAT TTCTATAGCTCATCTAAGCTCCAAGAACACCAGCCATGGACTAGACAGAAGGCCAATATC TAGGTGAGATTGTTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCACACAACATGGCTTT GTCGACCGGTTCACCGTGCGCCGCATGCAAGTTTCTCAGACGAAAATGCACTGCAGAGTG CATATTTGCACCCTACTTCCCCCCAGAGGACCCCCAAAAGTTTGCCAATGTCCACAAGCT CTTTGGGGCCAGCAACGTGGGCAAGCTACTCATCGAGCTGCCTCTGTGCGCGCGTGAGGA TGCAGTAAATTCTCTGGCATACGAGGCCGATGCACGCATGAAGGACCCGGTCTACGGCTG TGCGGGTGCCATCTCCATCCTCCAATGCAGGGTAGCGCAATTGCAAGAGGAGCTTATGGC GGCGAGATCTGAGCTTTGCAGATTGAAGGCACAGGCTGGCAGTGATCCTCTTGAACCTCA AAAATGCAGACTACCATCCGAGCATCTTCTTCCATCATATCATAGTCAGCTTTATCAATT GAGCTCTCCCTACATTACCAGCTTGATCCAACCAAAACAAGAAGCTGTTACACACGCCTC CTCTCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O04479 |
Definition |
sp|O04479|LBD6_ARATH LOB domain-containing protein 6 OS=Arabidopsis thaliana |
Align length |
110 |
Score (bit) |
161.0 |
E-value |
3.0e-39 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T5Z1 |
Definition |
tr|A9T5Z1|A9T5Z1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
110 |
Score (bit) |
177.0 |
E-value |
5.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958878|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_C20, 5' (667 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T5Z1|A9T5Z1_PHYPA Predicted protein (Fragment) OS=Physcomit... 177 5e-43 tr|A9T5Y2|A9T5Y2_PHYPA Predicted protein (Fragment) OS=Physcomit... 176 1e-42 tr|A9SEN7|A9SEN7_PHYPA Predicted protein (Fragment) OS=Physcomit... 176 1e-42 tr|A9RJC3|A9RJC3_PHYPA Predicted protein (Fragment) OS=Physcomit... 171 3e-41 tr|A7QYE7|A7QYE7_VITVI Chromosome undetermined scaffold_245, who... 167 7e-40 tr|Q27YF2|Q27YF2_HORVU Ramosa 2 (Fragment) OS=Hordeum vulgare PE... 164 5e-39 tr|A1E0V1|A1E0V1_WHEAT Ramosa 2 OS=Triticum aestivum PE=2 SV=1 164 6e-39 tr|A7L4B2|A7L4B2_CARPA Asymmetric leaves 2 OS=Carica papaya PE=4... 162 1e-38 tr|A7QXR5|A7QXR5_VITVI Chromosome undetermined scaffold_229, who... 162 2e-38 tr|B7XG54|B7XG54_ARATH ASYMMETRIC LEAVES2 OS=Arabidopsis thalian... 161 3e-38 tr|B7XG57|B7XG57_ARATH ASYMMETRIC LEAVES2-like 3 protein OS=Arab... 161 4e-38 tr|Q27YF3|Q27YF3_MAIZE Ramosa 2 (Putative uncharacterized protei... 160 9e-38 tr|Q27YF1|Q27YF1_SORBI Ramosa 2 (Fragment) OS=Sorghum bicolor PE... 160 9e-38 tr|B6TX58|B6TX58_MAIZE Ramosa 2 OS=Zea mays PE=2 SV=1 160 9e-38 tr|Q9AS62|Q9AS62_ORYSJ cDNA clone:001-127-G05, full insert seque... 159 1e-37 tr|B5RID4|B5RID4_ARATH ASYMMETRIC LEAVES2-like 1 protein OS=Arab... 159 1e-37 tr|B2KKZ3|B2KKZ3_ORYSJ LOB domain protein 1 OS=Oryza sativa subs... 159 1e-37 tr|A7PCU2|A7PCU2_VITVI Oleosin OS=Vitis vinifera GN=GSVIVT000160... 159 1e-37 tr|A2ZPQ2|A2ZPQ2_ORYSJ Putative uncharacterized protein OS=Oryza... 159 1e-37 tr|A7QYE8|A7QYE8_VITVI Chromosome undetermined scaffold_245, who... 159 2e-37 tr|A3B429|A3B429_ORYSJ Putative uncharacterized protein OS=Oryza... 159 2e-37 tr|Q6AT73|Q6AT73_ORYSJ Os05g0417000 protein OS=Oryza sativa subs... 158 3e-37 tr|B7XG58|B7XG58_ARATH ASYMMETRIC LEAVES2-like 4 protein OS=Arab... 158 3e-37 tr|A2Y4Q2|A2Y4Q2_ORYSI Putative uncharacterized protein OS=Oryza... 158 3e-37 tr|Q49KJ2|Q49KJ2_WHEAT AS2 OS=Triticum aestivum PE=2 SV=1 157 6e-37 tr|A7PM43|A7PM43_VITVI Chromosome chr14 scaffold_21, whole genom... 157 6e-37 tr|A7QGV4|A7QGV4_VITVI Chromosome chr16 scaffold_94, whole genom... 157 7e-37 tr|Q75H63|Q75H63_ORYSJ Putative uncharacterized protein OSJNBb00... 155 2e-36 tr|B6TCC6|B6TCC6_MAIZE ASYMMETRIC LEAVES2 OS=Zea mays PE=2 SV=1 155 2e-36 tr|A3AKD4|A3AKD4_ORYSJ Putative uncharacterized protein OS=Oryza... 155 2e-36
>tr|A9T5Z1|A9T5Z1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_19038 PE=4 SV=1 Length = 112
Score = 177 bits (449), Expect = 5e-43 Identities = 84/110 (76%), Positives = 95/110 (86%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ SPCAACKFLRRKCT+EC+FAPYFPP+ P KFANVHK+FGASN+ KLL ELP+ Sbjct: 1 MASSSSSPCAACKFLRRKCTSECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPMHQ 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYEADAR+KDPVYGC GAIS+LQ +VAQLQ EL A S+L R Sbjct: 61 REDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQNELAIAHSDLAR 110
>tr|A9T5Y2|A9T5Y2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_19474 PE=4 SV=1 Length = 112
Score = 176 bits (446), Expect = 1e-42 Identities = 84/110 (76%), Positives = 95/110 (86%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ SPCAACKFLRRKCT+EC+FAPYFPP+ P KFANVHK+FGASNV KLL ELP Sbjct: 1 MASSSSSPCAACKFLRRKCTSECVFAPYFPPDQPHKFANVHKIFGASNVTKLLNELPTHQ 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYEADAR+KDPVYGC GAIS+LQ +VAQLQ +L +A S+L R Sbjct: 61 REDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQNDLASAHSDLAR 110
>tr|A9SEN7|A9SEN7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_19037 PE=4 SV=1 Length = 113
Score = 176 bits (446), Expect = 1e-42 Identities = 84/110 (76%), Positives = 94/110 (85%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ SPCAACKFLRRKCTAEC+FAPYFPP+ P KFANVHK+FGASN+ KLL ELP Sbjct: 1 MASSSSSPCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHQ 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYEADAR+KDPVYGC GAIS+LQ +VAQLQ +L A S+L R Sbjct: 61 REDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQNDLAIAHSDLAR 110
>tr|A9RJC3|A9RJC3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_27856 PE=4 SV=1 Length = 113
Score = 171 bits (434), Expect = 3e-41 Identities = 82/110 (74%), Positives = 92/110 (83%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ PCAACKFLRRKCT EC+FAPYFPP+ P KFANVHK+FGASN+ KLL ELP Sbjct: 1 MASSSSFPCAACKFLRRKCTEECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHR 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYE+DAR+KDPVYGC GAIS+LQ +VAQLQ EL A S+L R Sbjct: 61 REDAVNSLAYESDARVKDPVYGCVGAISVLQRQVAQLQTELSIAHSDLAR 110
>tr|A7QYE7|A7QYE7_VITVI Chromosome undetermined scaffold_245, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009702001 PE=4 SV=1 Length = 359
Score = 167 bits (422), Expect = 7e-40 Identities = 86/147 (58%), Positives = 105/147 (71%), Gaps = 2/147 (1%) Frame = +2
Query: 182 STGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCARED 361 S+ SPCAACK LRRKCT EC+FAPYFPP+ PQKFANVHK+FGASNV KLL EL RED Sbjct: 3 SSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHRED 62
Query: 362 AVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCRLKAQAGSDPL-EP 538 AVNSLAYEA+AR++DPVYGC G ISILQ R+ Q+Q +L A+ EL + P+ +P Sbjct: 63 AVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIPQP 122
Query: 539 QKCRLPSEHLL-PSYHSQLYQLSSPYI 616 C LP +H+ P SQ+ + P + Sbjct: 123 AGC-LPQQHMSNPCSSSQIPYNTPPML 148
>tr|Q27YF2|Q27YF2_HORVU Ramosa 2 (Fragment) OS=Hordeum vulgare PE=4 SV=1 Length = 257
Score = 164 bits (415), Expect = 5e-39 Identities = 82/115 (71%), Positives = 95/115 (82%), Gaps = 1/115 (0%) Frame = +2
Query: 188 GSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCAREDAV 367 G+PCAACKFLRRKC C+FAPYFPPE+PQKFANVHK+FGASNV KLL ELP REDAV Sbjct: 25 GAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELPPHQREDAV 84
Query: 368 NSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCRLK-AQAGSDP 529 +SLAYEA+AR+KDPVYGC GAIS+LQ +V +LQ+EL AA +EL R + GS P Sbjct: 85 SSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHTELLRYACGELGSIP 139
>tr|A1E0V1|A1E0V1_WHEAT Ramosa 2 OS=Triticum aestivum PE=2 SV=1 Length = 257
Score = 164 bits (414), Expect = 6e-39 Identities = 79/105 (75%), Positives = 91/105 (86%) Frame = +2
Query: 188 GSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCAREDAV 367 G+PCAACKFLRRKC C+FAPYFPPE+PQKFANVHK+FGASNV KLL ELP REDAV Sbjct: 25 GAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELPPHQREDAV 84
Query: 368 NSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 +SLAYEA+AR+KDPVYGC GAIS+LQ +V +LQ+EL AA +EL R Sbjct: 85 SSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHTELLR 129
>tr|A7L4B2|A7L4B2_CARPA Asymmetric leaves 2 OS=Carica papaya PE=4 SV=1 Length = 205
Score = 162 bits (411), Expect = 1e-38 Identities = 78/110 (70%), Positives = 90/110 (81%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ SPCAACKFLRRKC EC+FAPYFPP+ PQKFANVHK+FGASNV KLL EL Sbjct: 1 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYEAD R++DPVYGC G IS+LQ ++ QLQ +L A+SEL + Sbjct: 61 REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSELSK 110
>tr|A7QXR5|A7QXR5_VITVI Chromosome undetermined scaffold_229, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009328001 PE=4 SV=1 Length = 208
Score = 162 bits (410), Expect = 2e-38 Identities = 78/110 (70%), Positives = 90/110 (81%) Frame = +2
Query: 173 MALSTGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCA 352 MA S+ SPCAACKFLRRKC EC+FAPYFPP+ PQKFANVHK+FGASNV KLL EL Sbjct: 1 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQ 60
Query: 353 REDAVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCR 502 REDAVNSLAYEAD R++DPVYGC G IS+LQ ++ QLQ +L A+SEL + Sbjct: 61 REDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQMDLSCAKSELSK 110
>tr|B7XG54|B7XG54_ARATH ASYMMETRIC LEAVES2 OS=Arabidopsis thaliana GN=AS2 PE=2 SV=1 Length = 199
Score = 161 bits (408), Expect = 3e-38 Identities = 77/110 (70%), Positives = 90/110 (81%) Frame = +2
Query: 182 STGSPCAACKFLRRKCTAECIFAPYFPPEDPQKFANVHKLFGASNVGKLLIELPLCARED 361 ST SPCAACKFLRRKC EC+FAPYFPP+ PQKFANVHK+FGASNV KLL EL RED Sbjct: 5 STNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRED 64
Query: 362 AVNSLAYEADARMKDPVYGCAGAISILQCRVAQLQEELMAARSELCRLKA 511 AVNSLAYEAD R++DPVYGC G IS+LQ ++ QLQ +L A+SEL + ++ Sbjct: 65 AVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQS 114
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