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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958990
Clone id TST39A01NGRL0003_H14
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_H14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCCTGTAGGGTTTGTTGGTATCATCAAGCTCACCGCCCTGATAATTCACAGGAACTCGA
AGCATTTTCTGTGCATTGCAGTCATACTAGCTCTCCCTGCTGCTCTGCAGGCACTTCTAC
TGGATACCTCGGGCTCGATCAGACAGTTTCTAGCCTCCATATCCTACCTGTACAAGCTTC
TGGACGGTAAACTGCCGCCGCCAGCTGTGATCGACCCCTCGGCCTTTGACAGGGGCTCGC
AACCCCATGCAGCTCATAAGGTCGCGCTGGAGGTGGCCCTGATCGCCTTCTCTCTTGTGG
TGGCTTTCACGTGCACGCCGCTGCTAACATTTAGTGCGTGCAGGGCGGTCCTGGGGAAGA
GCGTGGATATGAGAGGGTCTGCAAGGGGGATATGGCGGTCGGTGGGAAAGCTGGTGGTGA
CGATTCTGTGCCTGGTGGCGGCGATGATGGTGGGCCTGGTAGCGGCGATGGTGGCGGTGG
CAGTGGGGACTGCGGTGGTTGGAGGCACTCTAGGAGCGGTTATAAGCGTAGCTGGAGTAT
CAGTGGTTGGCGCTGGGCTCGTCTATTTAGGGGTGATGCTAAATTTGGCCGGAACGGTGG
CTATTGTGGAGGAG
■■Homology search results ■■ -
sp_hit_id Q0DVX2
Definition sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica
Align length 31
Score (bit) 30.8
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958990|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_H14, 5'
         (614 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=O...    31   5.8  
sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thali...    30   6.8  
sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage p...    30   7.5  
sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated ...    30   7.5  
sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activate...    30   7.5  
sp|Q214R1|ISPDF_RHOPB Bifunctional enzyme ispD/ispF OS=Rhodopseu...    30   9.8  
sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattu...    30   9.8  

>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50
           OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2
           SV=2
          Length = 641

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 290 LSCGGFHVHAAANI*CVQGGPGEE-RGYERV 379
           LSCGG     AA     +GG GEE RGYERV
Sbjct: 27  LSCGGARRSWAAAAATAEGGGGEEGRGYERV 57


>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana
            GN=FH20 PE=2 SV=2
          Length = 1615

 Score = 28.1 bits (61), Expect(2) = 6.8
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -3

Query: 357  SPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRP 220
            +P PP    M   A    PP       PPP  P  +HG A P   P
Sbjct: 1022 APPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1067



 Score = 21.2 bits (43), Expect(2) = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 398  PPYPPCRPSHIHALPQDRP 342
            PP PP   SH+ ++P   P
Sbjct: 996  PPPPPPPFSHVSSIPPPPP 1014



 Score = 30.4 bits (67), Expect = 7.5
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = -3

Query: 387  PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRP 220
            P    S+  S P PP    M   A    PP       PPP  P  +HG A P   P
Sbjct: 999  PPPPFSHVSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1054


>sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage
           protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2
          Length = 568

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 291 SLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWRSVGKLVVTILC 431
           SL + F   P+LTF++ R V+    +  G     WR  G ++V I+C
Sbjct: 447 SLQLPFALIPILTFTSLRPVMSDFANGLG-----WRIAGGILVLIIC 488


>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Rattus norvegicus
            GN=Hcn4 PE=2 SV=1
          Length = 1198

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -3

Query: 396  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPY 256
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1016 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1075

Query: 255  EL 250
             L
Sbjct: 1076 RL 1077


>sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4
            PE=1 SV=2
          Length = 1186

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -3

Query: 396  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPY 256
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1003 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1062

Query: 255  EL 250
             L
Sbjct: 1063 RL 1064


>sp|Q214R1|ISPDF_RHOPB Bifunctional enzyme ispD/ispF
           OS=Rhodopseudomonas palustris (strain BisB18) GN=ispDF
           PE=3 SV=1
          Length = 398

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 388 PLADPLISTLFPRTALHALNVSSGVHVKATT--------REKAIRATSSATL*AAWGCEP 233
           PL +P+   +   T L    ++    VKATT        RE+ I AT+SATL   WG   
Sbjct: 340 PLREPMRQRIAEITGLPVARIA----VKATTSERLGFTGREEGIAATASATLRLPWGTNG 395

Query: 232 LS 227
           L+
Sbjct: 396 LA 397


>sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattus
           norvegicus GN=Nfkbil1 PE=2 SV=2
          Length = 381

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 323 QRRARESHHKREGDQGHLQRDLMSCMGLRAPVKGRGVDHSWRRQFTVQKL 174
           +R ARE   K+       +R  +   G R P +  G  HSWR+Q   Q+L
Sbjct: 203 ERLAREHAQKQ-------RRQQLEAEGSRRPPRAEGSSHSWRQQEEEQRL 245
tr_hit_id Q6Z8B3
Definition tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 37.0
E-value 0.91
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958990|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_H14, 5'
         (614 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa sub...    37   0.91 
tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein OS=Caeno...    37   1.2  
tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family OS...    36   2.0  
tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2 GN...    35   4.5  
tr|A8J6J7|A8J6J7_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   4.5  
tr|Q8BSC6|Q8BSC6_MOUSE Putative uncharacterized protein (Fragmen...    34   5.9  
tr|A8CWM6|A8CWM6_9CHLR Elongation factor G, domain IV OS=Dehaloc...    34   5.9  
tr|Q69PS1|Q69PS1_ORYSJ Putative uncharacterized protein OSJNBb00...    34   5.9  
tr|Q0E424|Q0E424_ORYSJ Os02g0140100 protein OS=Oryza sativa subs...    34   5.9  
tr|A7LK18|A7LK18_HHV2 VP11/12 OS=Human herpesvirus 2 GN=UL46 PE=...    34   7.7  
tr|B4WBZ0|B4WBZ0_9CAUL Cytochrome C biogenesis protein transmemb...    34   7.7  

>tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp.
           japonica GN=P0470A03.23 PE=4 SV=1
          Length = 272

 Score = 37.0 bits (84), Expect = 0.91
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 390 SPLQTLSYPRS-SPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPR 217
           +P+QT   P   +P PPC      AAC   PP   R S PPP  P  L   A+ C+R R
Sbjct: 178 APMQTPPPPPGPAPLPPC------AACWPPPPSPLRASTPPPPGPAPLPPFAACCRRRR 230


>tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG14923 PE=4 SV=1
          Length = 1423

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -3

Query: 390 SPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPRGR 211
           SP+Q     R SP PP      +A    + P  RRRS P P R  + H ++     PR R
Sbjct: 427 SPIQKRKPSRRSPSPPRRRRSPSAT---RSPARRRRSSPSPIRGKKNHHMSPSASPPRRR 483

Query: 210 SQLAAAVYRPEACTGRIW 157
                +  R  + + ++W
Sbjct: 484 RDQTKSPVRDRSESPKMW 501


>tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family
           OS=Sorangium cellulosum (strain So ce56) GN=sce4453 PE=4
           SV=1
          Length = 281

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -3

Query: 399 TAISPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYEL--HGVASP-- 232
           TA   L T + P S+P  P +   + AAC+   P     SG P ARP  L  HGVA+P  
Sbjct: 85  TAGEVLVTTALPISTPIAPSSSHSMPAACSLSVP-----SGAPAARPASLPAHGVAAPSH 139

Query: 231 -CQRPRGRSQLAAA 193
             Q PR R+    A
Sbjct: 140 GAQLPRERAVATGA 153


>tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2
           GN=UL46 PE=4 SV=1
          Length = 722

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -3

Query: 360 SSPGPPCTH*MLAAACT*KPPQERRRSGPPP---ARPYELHGVASPCQRPR----GRSQL 202
           ++ GPP     +  +C  K  + RR + PPP   ARP+        C+R R        +
Sbjct: 425 AASGPPGGRGAVGGSCRDKIQRTRRDNAPPPLPRARPHSTPAAPRRCRRHREDLPEPPHV 484

Query: 201 AAAVYRPEACTGR--IWRLETV*SSPRYPVEVPA 106
            AA   PE C GR   +      + PR P   PA
Sbjct: 485 DAADRGPEPCAGRPATYYTHMAGAPPRLPPRNPA 518


>tr|A8J6J7|A8J6J7_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_192466 PE=4 SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -3

Query: 387 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPRG 214
           P Q   YP S+PG P    +  A     PPQ++    PP  +PY     A P Q+P G
Sbjct: 325 PQQPYGYPYSAPGYPAAQPLYGA-----PPQQQPYCAPPQQQPYG----APPQQQPYG 373


>tr|Q8BSC6|Q8BSC6_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=1700084E18Rik PE=2 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = -3

Query: 384 LQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPY---ELHGVASPCQRPRG 214
           L   S P  SPGPP             PP    R   PPA P+    LH  ASP      
Sbjct: 142 LSARSRPAGSPGPP-------------PPSPAARRRAPPAPPFVCPSLHHSASPAPEVTS 188

Query: 213 RSQLAAAVYRPEAC 172
           R   A A  RP  C
Sbjct: 189 RPD-APAASRPSPC 201


>tr|A8CWM6|A8CWM6_9CHLR Elongation factor G, domain IV
           OS=Dehalococcoides sp. VS GN=DeVSDRAFT_0325 PE=4 SV=1
          Length = 652

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 28/91 (30%), Positives = 36/91 (39%)
 Frame = -1

Query: 401 RPPYPPCRPSHIHALPQDRPARTKC*QRRARESHHKREGDQGHLQRDLMSCMGLRAPVKG 222
           RP   P  P H H   +   A     +RRA    H+  G   H  RD    +  RA  +G
Sbjct: 22  RPDRTP--PRHHHRRGRRAGALDAARRRRASPDRHRHPGP--HRLRDRSRTLAARARRRG 77

Query: 221 RGVDHSWRRQFTVQKLVQVGYGG*KLSDRAR 129
           RGV    RR   +   V  G    + +DR R
Sbjct: 78  RGVQRRRRRAAAIGNRVAPGAPPRRAADRVR 108


>tr|Q69PS1|Q69PS1_ORYSJ Putative uncharacterized protein
           OSJNBb0039F24.31 (Putative uncharacterized protein
           P0019A05.18) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0039F24.31 PE=4 SV=1
          Length = 160

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = -3

Query: 387 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPRGRS 208
           P+   S PR+S   P +    A  C   PP+  R++ PPP     L G ASP  +P  R 
Sbjct: 16  PVPYKSLPRTSS--PISLTRRALPCLLPPPRRARQAPPPP----PLSGRASPLLQPPLRR 69

Query: 207 QLAAAVYRPEACTGRIWRLETV*SSPRYP 121
            +AAA       T    RL    + P  P
Sbjct: 70  TIAAASIAAARATSAAVRLPCAVAIPLSP 98


>tr|Q0E424|Q0E424_ORYSJ Os02g0140100 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0140100 PE=4 SV=1
          Length = 130

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -3

Query: 387 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARP 259
           P  TL  P  +  PP T    AAA     P  RR   PPPARP
Sbjct: 53  PPSTLISPSHAAPPPSTPPSTAAAPPSSQPSSRRHLSPPPARP 95


>tr|A7LK18|A7LK18_HHV2 VP11/12 OS=Human herpesvirus 2 GN=UL46 PE=4
           SV=1
          Length = 722

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -3

Query: 360 SSPGPPCTH*MLAAACT*KPPQERRRSGPPP---ARPYELHGVASPCQRPR----GRSQL 202
           ++ GPP     +  +C  K  + RR + PPP   ARP+         +RPR        +
Sbjct: 425 AASGPPGGRGAVGGSCRDKIQRTRRDNAPPPLPRARPHSTPAAPRRFRRPREDLPEPPHV 484

Query: 201 AAAVYRPEACTGR--IWRLETV*SSPRYPVEVPA 106
            AA   PE C GR   +      + PR P   PA
Sbjct: 485 DAADRGPEPCAGRPATYYTHMAGAPPRLPPRNPA 518