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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959003
Clone id TST39A01NGRL0003_I04
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_I04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATGAACATCACTGTGCATCATGTCATGGTCTCACAGTACAGCCCATCAAGGCGAGAGGAT
TGTGTCGTCTGTATTGGGCTCCCCTCCCAATTCCCTTTTAGCCAGGTATTGGCTTATTGG
CAATTTGGCATTAAACACGCTGCCGTAGGACACCAACAATGAGCATGGTAAGACCTTGTT
CAAAACAAAGGTGTCTTTCCATGTCTGTCTCTCATCGAAATAGTGAATATTTCTGAGATG
CCATAGGGTGTCTTAAAATTCAGACTGACATATAGTCTCAAGACACGTAGGTAGGTGACA
TACTACTCAGGGATGTTGCACATACAGCTTCGTTTTGGTTCCACTCAAGGACAGGTGCGG
GGGTGGCTTGTTTTTGTGCTGACCTACTGAGATTTAGTACGGAAAAGTCGTCGGAACCAG
CTTGTTCCTGTGCTCAGTACTAATTCGCGGGGAGTGGTTTTGTATTTGCAGCTATTGTAC
CGAGGCTTGGATGAATGTGCAGGGAGGAGTGTGGAAAGCATGTGGATGGCTGCTTGGACA
GGTACAAGGGTACTGCATGACATAGTGAGGGCCGAGAGGTTTGACAGGGGCCGGATCTAG
GAAGGCAAGTAAATTTATAGTCGAGCTGGGGGATCTTTAGTATCAAGCATGAGTATCGGG
TAGTGGGAA
■■Homology search results ■■ -
sp_hit_id P38898
Definition sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS=Saccharomyces cerevisiae
Align length 108
Score (bit) 38.1
E-value 0.042
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959003|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I04, 5'
         (669 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS...    38   0.042
sp|Q1X8D7|LRC36_HUMAN Leucine-rich repeat-containing protein 36 ...    34   0.80 
sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sa...    33   1.8  
sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus no...    31   6.8  
sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus mus...    31   6.8  
sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|A7FHE3|KDUI_YERP3 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    31   6.8  
sp|A7MPJ5|KDUI_ENTS8 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    30   8.8  

>sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C
           OS=Saccharomyces cerevisiae GN=YHR217C PE=5 SV=1
          Length = 153

 Score = 38.1 bits (87), Expect = 0.042
 Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
 Frame = -1

Query: 570 PHYVMQYPCTCPSSHPHAFHTPPCTFIQASVQ*LQIQNHSPRISTEHRNKLVPTTFPY*I 391
           PH    +P T P+  PH  HTP  T    S+        SP ++  H    +PTT    I
Sbjct: 47  PHPHTPHPHTTPTPTPHHTHTPHTTLSNLSLNLPSHYPTSPLVTLPHSTIPLPTT----I 102

Query: 390 SVGQHKNKPPP--------HLSLSGTKTKLYVQHP*VVCHLPTCLETI 271
            +  +   PPP         +S S T T L   HP    H    L +I
Sbjct: 103 HLSTYYYHPPPIITVTLQLPISNSTTITLLLPYHPPCPTHCTVVLPSI 150


>sp|Q1X8D7|LRC36_HUMAN Leucine-rich repeat-containing protein 36
           OS=Homo sapiens GN=LRRC36 PE=2 SV=2
          Length = 754

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 518 LSTLLPAHSSKPRYNSCKYKTTP-RELVLSTGTSWFRRLFRTKS 390
           L  L PAH S P       +TTP R L+LS GTS  R++F  +S
Sbjct: 424 LDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRS 467


>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens
            GN=UBR4 PE=1 SV=1
          Length = 5183

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
 Frame = -1

Query: 354  LSLSGTKTKLYVQHP*VVCHLPTCLETICQSEF*DTLWHLRNIHYFDERQTWKDTFVLNK 175
            L++  ++ K     P +V +LP+ ++T+C+S      W+  N + F    +W++ F  N 
Sbjct: 1202 LAIGSSRCKANTLGPTLVQNLPSSVQTVCES------WNNINTNEFPNIGSWRNAFA-ND 1254

Query: 174  VLPCSLLVS------YGSVFNAKLPISQYLAKRELGGEPNTDDTIL 55
             +P    +S       G++ +  LP++  L    L     T D I+
Sbjct: 1255 TIPSESYISAVQAAHLGTLCSQSLPLAASLKHTLLSLVRLTGDLIV 1300


>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus
            norvegicus GN=Ubr4 PE=2 SV=2
          Length = 5194

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
 Frame = -1

Query: 354  LSLSGTKTKLYVQHP*VVCHLPTCLETICQSEF*DTLWHLRNIHYFDERQTWKDTFVLNK 175
            L++  ++ K     P +V +LP+ ++++C+S      W+  N + F    +W++ F  N 
Sbjct: 1203 LAIGSSRCKANTLGPTLVQNLPSSVQSVCES------WNNINTNEFPNIGSWRNAFA-ND 1255

Query: 174  VLPCSLLVS------YGSVFNAKLPISQYLAKRELGGEPNTDDTIL 55
             +P    +S       G++    LP++  L    L     T D I+
Sbjct: 1256 TIPSESYISAVQAAHLGTLCGQSLPLAASLKHALLSLVRLTGDLIV 1301


>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus
            GN=Ubr4 PE=1 SV=1
          Length = 5180

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
 Frame = -1

Query: 354  LSLSGTKTKLYVQHP*VVCHLPTCLETICQSEF*DTLWHLRNIHYFDERQTWKDTFVLNK 175
            L++  ++ K     P +V +LP+ ++++C+S      W+  N + F    +W++ F  N 
Sbjct: 1201 LAIGSSRCKANTLGPTLVQNLPSSVQSVCES------WNNINTNEFPNIGSWRNAFA-ND 1253

Query: 174  VLPCSLLVS------YGSVFNAKLPISQYLAKRELGGEPNTDDTIL 55
             +P    +S       G++    LP++  L    L     T D I+
Sbjct: 1254 TIPSESYISAVQAAHLGTLCGQSLPLAASLKHTLLSLVRLTGDLIV 1299


>sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pseudotuberculosis GN=kduI
           PE=3 SV=1
          Length = 278

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 195 DTFVLNKVLPCSLLVSYGSVFNAKLPISQYLAKRELG 85
           D  ++  +LP S  VS G+    +L +S +L +RELG
Sbjct: 43  DRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELG 79


>sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis (strain Pestoides F)
           GN=kduI PE=3 SV=1
          Length = 278

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 195 DTFVLNKVLPCSLLVSYGSVFNAKLPISQYLAKRELG 85
           D  ++  +LP S  VS G+    +L +S +L +RELG
Sbjct: 43  DRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELG 79


>sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Nepal516) GN=kduI PE=3 SV=1
          Length = 278

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 195 DTFVLNKVLPCSLLVSYGSVFNAKLPISQYLAKRELG 85
           D  ++  +LP S  VS G+    +L +S +L +RELG
Sbjct: 43  DRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELG 79


>sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis GN=kduI PE=3 SV=1
          Length = 278

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 195 DTFVLNKVLPCSLLVSYGSVFNAKLPISQYLAKRELG 85
           D  ++  +LP S  VS G+    +L +S +L +RELG
Sbjct: 43  DRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELG 79


>sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Antiqua) GN=kduI PE=3 SV=1
          Length = 278

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 195 DTFVLNKVLPCSLLVSYGSVFNAKLPISQYLAKRELG 85
           D  ++  +LP S  VS G+    +L +S +L +RELG
Sbjct: 43  DRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELG 79
tr_hit_id Q9NV11
Definition tr|Q9NV11|Q9NV11_HUMAN cDNA FLJ11004 fis, clone PLACE1002941 OS=Homo sapiens
Align length 44
Score (bit) 33.9
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959003|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I04, 5'
         (669 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9NV11|Q9NV11_HUMAN cDNA FLJ11004 fis, clone PLACE1002941 OS=...    34   9.4  
tr|B7Z7B3|B7Z7B3_HUMAN cDNA FLJ55796, highly similar to Homo sap...    34   9.4  

>tr|Q9NV11|Q9NV11_HUMAN cDNA FLJ11004 fis, clone PLACE1002941
           OS=Homo sapiens PE=2 SV=1
          Length = 326

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 518 LSTLLPAHSSKPRYNSCKYKTTP-RELVLSTGTSWFRRLFRTKS 390
           L  L PAH S P       +TTP R L+LS GTS  R++F  +S
Sbjct: 156 LDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRS 199


>tr|B7Z7B3|B7Z7B3_HUMAN cDNA FLJ55796, highly similar to Homo
           sapiens leucine rich repeat containing 36 (LRRC36), mRNA
           OS=Homo sapiens PE=2 SV=1
          Length = 529

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 518 LSTLLPAHSSKPRYNSCKYKTTP-RELVLSTGTSWFRRLFRTKS 390
           L  L PAH S P       +TTP R L+LS GTS  R++F  +S
Sbjct: 303 LDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRS 346