DK959008
Clone id TST39A01NGRL0003_I09
Library
Length 437
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_I09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTTAATTTTGATAGAGTGAGTGTCGACACTGCTGTGGCCATGGCGCTTACGCTCTCTTCC
TGCTCTTCGTCCGTGTTGGCTGCCAACACGTCCTCACGACGCTCGGTTCCCACGTACAAC
CAGGCGGGTGGCAGCATTGTGAGCTTTGATGGTTTGCGAATGAATGATTCACCAAAGGGA
ATCAGGCTGTAGAGTTTAATTCAGGCGCTGTCACTTGTGTCTTTTCATCCACATGAAAAT
TCTGCTGCTGTGCTTCCCATAAGAGCAACAACGGCAGAGGCGCCTCCACTGGCTCTGCCG
AAGCAGAAGATTCGAATCAAGCTGAAGTCCTATTGGGTTGATCGTATCGAGGAAGCCATA
AAGTTGATCCTAGATGCTGCTCGCAGGACTGAGACGAAGATTATGGGTCCAGTGCCTCTA
CCCACTAGGAGGCGCTT
■■Homology search results ■■ -
sp_hit_id Q9LK61
Definition sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana
Align length 45
Score (bit) 68.6
E-value 1.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959008|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I09, 5'
(437 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS... 69 1e-11
sp|Q9M4Y3|RR10_MESCR 30S ribosomal protein S10, chloroplastic OS... 67 2e-11
sp|A5IM82|RS10_THEP1 30S ribosomal protein S10 OS=Thermotoga pet... 50 3e-06
sp|P38518|RS10_THEMA 30S ribosomal protein S10 OS=Thermotoga mar... 50 3e-06
sp|A8F4R0|RS10_THELT 30S ribosomal protein S10 OS=Thermotoga let... 50 4e-06
sp|Q2JUX3|RS10_SYNJA 30S ribosomal protein S10 OS=Synechococcus ... 50 5e-06
sp|Q2JMX6|RS10_SYNJB 30S ribosomal protein S10 OS=Synechococcus ... 49 1e-05
sp|A6LLL2|RS10_THEM4 30S ribosomal protein S10 OS=Thermosipho me... 47 3e-05
sp|A3DJH1|RS10_CLOTH 30S ribosomal protein S10 OS=Clostridium th... 47 3e-05
sp|Q6MJ14|RS10_BDEBA 30S ribosomal protein S10 OS=Bdellovibrio b... 47 3e-05
sp|Q04C16|RS10_LACDB 30S ribosomal protein S10 OS=Lactobacillus ... 47 3e-05
sp|Q1GBL9|RS10_LACDA 30S ribosomal protein S10 OS=Lactobacillus ... 47 3e-05
sp|A7HM53|RS10_FERNB 30S ribosomal protein S10 OS=Fervidobacteri... 47 3e-05
sp|P19460|RR10_GUITH 30S ribosomal protein S10, chloroplastic OS... 47 3e-05
sp|A1WHC4|RS10_VEREI 30S ribosomal protein S10 OS=Verminephrobac... 47 5e-05
sp|Q73PN2|RS10_TREDE 30S ribosomal protein S10 OS=Treponema dent... 47 5e-05
sp|Q2LQA2|RS10_SYNAS 30S ribosomal protein S10 OS=Syntrophus aci... 47 5e-05
sp|Q12GX2|RS10_POLSJ 30S ribosomal protein S10 OS=Polaromonas sp... 47 5e-05
sp|A1VIP9|RS10_POLNA 30S ribosomal protein S10 OS=Polaromonas na... 47 5e-05
sp|A1TYJ6|RS10_MARAV 30S ribosomal protein S10 OS=Marinobacter a... 47 5e-05
sp|O66430|RS10_AQUAE 30S ribosomal protein S10 OS=Aquifex aeolic... 47 5e-05
sp|A1W2Q6|RS10_ACISJ 30S ribosomal protein S10 OS=Acidovorax sp.... 47 5e-05
sp|A1TJ06|RS10_ACIAC 30S ribosomal protein S10 OS=Acidovorax ave... 47 5e-05
sp|P51286|RR10_PORPU 30S ribosomal protein S10, chloroplastic OS... 47 5e-05
sp|Q21RV7|RS10_RHOFD 30S ribosomal protein S10 OS=Rhodoferax fer... 46 6e-05
sp|A5VLK6|RS10_LACRD 30S ribosomal protein S10 OS=Lactobacillus ... 46 6e-05
sp|P0A4A1|RS10_CHLTR 30S ribosomal protein S10 OS=Chlamydia trac... 46 6e-05
sp|Q3KLR4|RS10_CHLTA 30S ribosomal protein S10 OS=Chlamydia trac... 46 6e-05
sp|Q9Z803|RS10_CHLPN 30S ribosomal protein S10 OS=Chlamydia pneu... 46 6e-05
sp|P0A4A2|RS10_CHLMU 30S ribosomal protein S10 OS=Chlamydia muri... 46 6e-05

>sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic
OS=Arabidopsis thaliana GN=RPS10 PE=1 SV=1
Length = 191

Score = 68.6 bits (166), Expect = 1e-11
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K ILDAAR T K MGPVPLPT++R
Sbjct: 92 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKR 136


>sp|Q9M4Y3|RR10_MESCR 30S ribosomal protein S10, chloroplastic
OS=Mesembryanthemum crystallinum GN=RPS10 PE=1 SV=1
Length = 197

Score = 67.4 bits (163), Expect = 2e-11
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K I+DAAR T K MGPVPLPT++R
Sbjct: 98 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKR 142


>sp|A5IM82|RS10_THEP1 30S ribosomal protein S10 OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=rpsJ PE=3 SV=1
Length = 102

Score = 50.4 bits (119), Expect = 3e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1

Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432
QKIRIKLK+Y + ++E+ K I++ A+ T +K+ GP+PLPT R
Sbjct: 4 QKIRIKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTER 46


>sp|P38518|RS10_THEMA 30S ribosomal protein S10 OS=Thermotoga
maritima GN=rpsJ PE=3 SV=1
Length = 102

Score = 50.4 bits (119), Expect = 3e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1

Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432
QKIRIKLK+Y + ++E+ K I++ A+ T +K+ GP+PLPT R
Sbjct: 4 QKIRIKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTER 46


>sp|A8F4R0|RS10_THELT 30S ribosomal protein S10 OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=rpsJ PE=3 SV=1
Length = 102

Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +1

Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432
QKIRIKLK+Y + ++E+ K I++ A+ T KI GP+PLPT R
Sbjct: 4 QKIRIKLKAYDHEVLDESAKKIVEVAKSTNAKISGPIPLPTER 46


>sp|Q2JUX3|RS10_SYNJA 30S ribosomal protein S10 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=rpsJ PE=3 SV=1
Length = 105

Score = 49.7 bits (117), Expect = 5e-06
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
+QKIRI+LK+Y ++ + I+D ARRTE +GP+PLPTRRR
Sbjct: 6 QQKIRIRLKAYDHRLLDTSCDKIVDTARRTEAVPVGPIPLPTRRR 50


>sp|Q2JMX6|RS10_SYNJB 30S ribosomal protein S10 OS=Synechococcus sp.
GN=rpsJ PE=3 SV=1
Length = 105

Score = 48.5 bits (114), Expect = 1e-05
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
+QKIRI+LK+Y ++ + I+D ARRT+ +GP+PLPTRRR
Sbjct: 6 QQKIRIRLKAYDHRLLDTSCDKIVDTARRTDAVPVGPIPLPTRRR 50


>sp|A6LLL2|RS10_THEM4 30S ribosomal protein S10 OS=Thermosipho
melanesiensis (strain BI429 / DSM 12029) GN=rpsJ PE=3
SV=1
Length = 102

Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +1

Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432
QKIRI+LK+Y ++E+ K I++ ++T K+ GPVPLPT R
Sbjct: 4 QKIRIRLKAYDHKLLDESAKKIVEVVKQTNAKVSGPVPLPTER 46


>sp|A3DJH1|RS10_CLOTH 30S ribosomal protein S10 OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=rpsJ PE=3
SV=1
Length = 103

Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432
KQKIRI+LK++ ++++ + I++ A+RT K+ GPVPLPT R
Sbjct: 4 KQKIRIRLKAFDHQVLDQSAEKIVETAKRTGAKVSGPVPLPTER 47


>sp|Q6MJ14|RS10_BDEBA 30S ribosomal protein S10 OS=Bdellovibrio
bacteriovorus GN=rpsJ PE=3 SV=1
Length = 105

Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +1

Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTR 429
QKIRI+LK++ ++++ K I++ ARRT K+ GP+PLPTR
Sbjct: 4 QKIRIRLKAFDHKLLDQSTKEIVETARRTGAKVAGPIPLPTR 45


tr_hit_id B8LMY6
Definition tr|B8LMY6|B8LMY6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 45
Score (bit) 71.6
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959008|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I09, 5'
(437 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LMY6|B8LMY6_PICSI Putative uncharacterized protein OS=Picea... 72 2e-11
tr|A9NNH5|A9NNH5_PICSI Putative uncharacterized protein OS=Picea... 72 2e-11
tr|Q5MD13|Q5MD13_BRANA 30S ribosomal protein S10-like OS=Brassic... 69 2e-10
tr|Q2V615|Q2V615_BRACM Putative uncharacterized protein OS=Brass... 69 2e-10
tr|A1YMX4|A1YMX4_BRACM 30S ribosomal protein S10-like OS=Brassic... 69 2e-10
tr|Q10QH0|Q10QH0_ORYSJ Os03g0196800 protein OS=Oryza sativa subs... 68 3e-10
tr|B8AQ33|B8AQ33_ORYSI Putative uncharacterized protein OS=Oryza... 68 3e-10
tr|A9YUX9|A9YUX9_DAUCA Chloroplast 30S ribosomal protein S10 (Fr... 67 3e-10
tr|B6TFQ9|B6TFQ9_MAIZE Chloroplast 30S ribosomal protein S10 OS=... 67 4e-10
tr|A9SPM1|A9SPM1_PHYPA Predicted protein OS=Physcomitrella paten... 67 6e-10
tr|A9PJ23|A9PJ23_POPJC Putative uncharacterized protein OS=Popul... 66 1e-09
tr|A9P907|A9P907_POPTR Putative uncharacterized protein OS=Popul... 66 1e-09
tr|A3AF38|A3AF38_ORYSJ Putative uncharacterized protein OS=Oryza... 66 1e-09
tr|A7Q956|A7Q956_VITVI Chromosome chr19 scaffold_66, whole genom... 65 2e-09
tr|A5BC08|A5BC08_VITVI Putative uncharacterized protein OS=Vitis... 65 2e-09
tr|A9SV12|A9SV12_PHYPA Predicted protein (Fragment) OS=Physcomit... 64 5e-09
tr|A6MZG9|A6MZG9_ORYSI Chloroplast 30S ribosomal protein S10 (Fr... 62 1e-08
tr|A6MW29|A6MW29_RHDSA Ribosomal protein S10 OS=Rhodomonas salin... 52 1e-05
tr|B1LBP1|B1LBP1_THESQ Ribosomal protein S10 OS=Thermotoga sp. (... 50 4e-05
tr|B7RFG1|B7RFG1_9THEM Ribosomal protein S10 OS=Marinitoga piezo... 50 4e-05
tr|A4RTZ9|A4RTZ9_OSTLU Plastid ribosomal protein S10 small ribos... 50 4e-05
tr|B6G641|B6G641_9ACTN Putative uncharacterized protein OS=Colli... 50 6e-05
tr|B4U743|B4U743_HYDS0 Ribosomal protein S10 OS=Hydrogenobaculum... 50 7e-05
tr|B0RZJ9|B0RZJ9_FINM2 30S ribosomal protein S10 OS=Finegoldia m... 49 1e-04
tr|B5Y988|B5Y988_COPPD Ribosomal protein S10 OS=Coprothermobacte... 49 1e-04
tr|B6G965|B6G965_9ACTN Putative uncharacterized protein OS=Colli... 49 2e-04
tr|B8HV47|B8HV47_9CHRO Ribosomal protein S10 OS=Cyanothece sp. P... 47 4e-04
tr|B4BGR6|B4BGR6_CLOTM Ribosomal protein S10 OS=Clostridium ther... 47 4e-04
tr|A8S713|A8S713_9FIRM Putative uncharacterized protein OS=Faeca... 47 4e-04
tr|B7JUP4|B7JUP4_SYNP8 Ribosomal protein S10 OS=Synechococcus sp... 47 5e-04

>tr|B8LMY6|B8LMY6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 199

Score = 71.6 bits (174), Expect = 2e-11
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IEEA K ILDAAR T K MGPVPLPT+RR
Sbjct: 99 KQKIRIKLRSYWVPLIEEACKQILDAARSTNAKTMGPVPLPTKRR 143


>tr|A9NNH5|A9NNH5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 195

Score = 71.6 bits (174), Expect = 2e-11
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IEEA K ILDAAR T K MGPVPLPT+RR
Sbjct: 95 KQKIRIKLRSYWVPLIEEACKQILDAARSTNAKTMGPVPLPTKRR 139


>tr|Q5MD13|Q5MD13_BRANA 30S ribosomal protein S10-like OS=Brassica
napus PE=2 SV=1
Length = 196

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K ILDAAR T K MGPVPLPT++R
Sbjct: 97 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKR 141


>tr|Q2V615|Q2V615_BRACM Putative uncharacterized protein OS=Brassica
campestris PE=2 SV=1
Length = 190

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K ILDAAR T K MGPVPLPT++R
Sbjct: 91 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKR 135


>tr|A1YMX4|A1YMX4_BRACM 30S ribosomal protein S10-like OS=Brassica
campestris PE=2 SV=1
Length = 193

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K ILDAAR T K MGPVPLPT++R
Sbjct: 94 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKR 138


>tr|Q10QH0|Q10QH0_ORYSJ Os03g0196800 protein OS=Oryza sativa subsp.
japonica GN=Os03g0196800 PE=2 SV=1
Length = 185

Score = 67.8 bits (164), Expect = 3e-10
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1

Query: 229 PHENSAAVLPIRXXXXXXXXXXXXKQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMG 408
P E +P+ KQKIRIKL+SYWV IE++ K I++AA+ T K MG
Sbjct: 62 PEETEGTGIPMPSSIGDDGEQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMG 121

Query: 409 PVPLPTRRR 435
PVPLPT+RR
Sbjct: 122 PVPLPTKRR 130


>tr|B8AQ33|B8AQ33_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_10381 PE=4 SV=1
Length = 185

Score = 67.8 bits (164), Expect = 3e-10
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1

Query: 229 PHENSAAVLPIRXXXXXXXXXXXXKQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMG 408
P E +P+ KQKIRIKL+SYWV IE++ K I++AA+ T K MG
Sbjct: 62 PEETEGTGIPMPSSIGDDGEQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMG 121

Query: 409 PVPLPTRRR 435
PVPLPT+RR
Sbjct: 122 PVPLPTKRR 130


>tr|A9YUX9|A9YUX9_DAUCA Chloroplast 30S ribosomal protein S10
(Fragment) OS=Daucus carota PE=2 SV=1
Length = 101

Score = 67.4 bits (163), Expect = 3e-10
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV IE++ K I+DAAR T K MGPVPLPT++R
Sbjct: 2 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKR 46


>tr|B6TFQ9|B6TFQ9_MAIZE Chloroplast 30S ribosomal protein S10 OS=Zea
mays PE=2 SV=1
Length = 190

Score = 67.0 bits (162), Expect = 4e-10
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1

Query: 229 PHENSAAVLPIRXXXXXXXXXXXXKQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMG 408
P E +P+ KQKIRIKL+SYWV IE++ K I++AA+ T K MG
Sbjct: 67 PPEGEGTGIPLPSSIGDDGEQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAQTTNAKTMG 126

Query: 409 PVPLPTRRR 435
PVPLPT+RR
Sbjct: 127 PVPLPTKRR 135


>tr|A9SPM1|A9SPM1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_133234 PE=4 SV=1
Length = 109

Score = 66.6 bits (161), Expect = 6e-10
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +1

Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435
KQKIRIKL+SYWV+ IE+A + IL+AAR ++ K MGPVPLPT++R
Sbjct: 9 KQKIRIKLRSYWVNLIEQACQQILEAARNSDAKTMGPVPLPTKKR 53