DK959008 |
Clone id |
TST39A01NGRL0003_I09 |
Library |
TST39 |
Length |
437 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_I09. 5' end sequence. |
Accession |
DK959008 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL335Contig1 |
Sequence |
CTTAATTTTGATAGAGTGAGTGTCGACACTGCTGTGGCCATGGCGCTTACGCTCTCTTCC TGCTCTTCGTCCGTGTTGGCTGCCAACACGTCCTCACGACGCTCGGTTCCCACGTACAAC CAGGCGGGTGGCAGCATTGTGAGCTTTGATGGTTTGCGAATGAATGATTCACCAAAGGGA ATCAGGCTGTAGAGTTTAATTCAGGCGCTGTCACTTGTGTCTTTTCATCCACATGAAAAT TCTGCTGCTGTGCTTCCCATAAGAGCAACAACGGCAGAGGCGCCTCCACTGGCTCTGCCG AAGCAGAAGATTCGAATCAAGCTGAAGTCCTATTGGGTTGATCGTATCGAGGAAGCCATA AAGTTGATCCTAGATGCTGCTCGCAGGACTGAGACGAAGATTATGGGTCCAGTGCCTCTA CCCACTAGGAGGCGCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LK61 |
Definition |
sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana |
Align length |
45 |
Score (bit) |
68.6 |
E-value |
1.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959008|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_I09, 5' (437 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS... 69 1e-11 sp|Q9M4Y3|RR10_MESCR 30S ribosomal protein S10, chloroplastic OS... 67 2e-11 sp|A5IM82|RS10_THEP1 30S ribosomal protein S10 OS=Thermotoga pet... 50 3e-06 sp|P38518|RS10_THEMA 30S ribosomal protein S10 OS=Thermotoga mar... 50 3e-06 sp|A8F4R0|RS10_THELT 30S ribosomal protein S10 OS=Thermotoga let... 50 4e-06 sp|Q2JUX3|RS10_SYNJA 30S ribosomal protein S10 OS=Synechococcus ... 50 5e-06 sp|Q2JMX6|RS10_SYNJB 30S ribosomal protein S10 OS=Synechococcus ... 49 1e-05 sp|A6LLL2|RS10_THEM4 30S ribosomal protein S10 OS=Thermosipho me... 47 3e-05 sp|A3DJH1|RS10_CLOTH 30S ribosomal protein S10 OS=Clostridium th... 47 3e-05 sp|Q6MJ14|RS10_BDEBA 30S ribosomal protein S10 OS=Bdellovibrio b... 47 3e-05 sp|Q04C16|RS10_LACDB 30S ribosomal protein S10 OS=Lactobacillus ... 47 3e-05 sp|Q1GBL9|RS10_LACDA 30S ribosomal protein S10 OS=Lactobacillus ... 47 3e-05 sp|A7HM53|RS10_FERNB 30S ribosomal protein S10 OS=Fervidobacteri... 47 3e-05 sp|P19460|RR10_GUITH 30S ribosomal protein S10, chloroplastic OS... 47 3e-05 sp|A1WHC4|RS10_VEREI 30S ribosomal protein S10 OS=Verminephrobac... 47 5e-05 sp|Q73PN2|RS10_TREDE 30S ribosomal protein S10 OS=Treponema dent... 47 5e-05 sp|Q2LQA2|RS10_SYNAS 30S ribosomal protein S10 OS=Syntrophus aci... 47 5e-05 sp|Q12GX2|RS10_POLSJ 30S ribosomal protein S10 OS=Polaromonas sp... 47 5e-05 sp|A1VIP9|RS10_POLNA 30S ribosomal protein S10 OS=Polaromonas na... 47 5e-05 sp|A1TYJ6|RS10_MARAV 30S ribosomal protein S10 OS=Marinobacter a... 47 5e-05 sp|O66430|RS10_AQUAE 30S ribosomal protein S10 OS=Aquifex aeolic... 47 5e-05 sp|A1W2Q6|RS10_ACISJ 30S ribosomal protein S10 OS=Acidovorax sp.... 47 5e-05 sp|A1TJ06|RS10_ACIAC 30S ribosomal protein S10 OS=Acidovorax ave... 47 5e-05 sp|P51286|RR10_PORPU 30S ribosomal protein S10, chloroplastic OS... 47 5e-05 sp|Q21RV7|RS10_RHOFD 30S ribosomal protein S10 OS=Rhodoferax fer... 46 6e-05 sp|A5VLK6|RS10_LACRD 30S ribosomal protein S10 OS=Lactobacillus ... 46 6e-05 sp|P0A4A1|RS10_CHLTR 30S ribosomal protein S10 OS=Chlamydia trac... 46 6e-05 sp|Q3KLR4|RS10_CHLTA 30S ribosomal protein S10 OS=Chlamydia trac... 46 6e-05 sp|Q9Z803|RS10_CHLPN 30S ribosomal protein S10 OS=Chlamydia pneu... 46 6e-05 sp|P0A4A2|RS10_CHLMU 30S ribosomal protein S10 OS=Chlamydia muri... 46 6e-05
>sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=1 SV=1 Length = 191
Score = 68.6 bits (166), Expect = 1e-11 Identities = 32/45 (71%), Positives = 37/45 (82%) Frame = +1
Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435 KQKIRIKL+SYWV IE++ K ILDAAR T K MGPVPLPT++R Sbjct: 92 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKR 136
>sp|Q9M4Y3|RR10_MESCR 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=1 SV=1 Length = 197
Score = 67.4 bits (163), Expect = 2e-11 Identities = 31/45 (68%), Positives = 37/45 (82%) Frame = +1
Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435 KQKIRIKL+SYWV IE++ K I+DAAR T K MGPVPLPT++R Sbjct: 98 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKR 142
>sp|A5IM82|RS10_THEP1 30S ribosomal protein S10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsJ PE=3 SV=1 Length = 102
Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 33/43 (76%) Frame = +1
Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432 QKIRIKLK+Y + ++E+ K I++ A+ T +K+ GP+PLPT R Sbjct: 4 QKIRIKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTER 46
>sp|P38518|RS10_THEMA 30S ribosomal protein S10 OS=Thermotoga maritima GN=rpsJ PE=3 SV=1 Length = 102
Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 33/43 (76%) Frame = +1
Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432 QKIRIKLK+Y + ++E+ K I++ A+ T +K+ GP+PLPT R Sbjct: 4 QKIRIKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTER 46
>sp|A8F4R0|RS10_THELT 30S ribosomal protein S10 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsJ PE=3 SV=1 Length = 102
Score = 50.1 bits (118), Expect = 4e-06 Identities = 23/43 (53%), Positives = 32/43 (74%) Frame = +1
Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432 QKIRIKLK+Y + ++E+ K I++ A+ T KI GP+PLPT R Sbjct: 4 QKIRIKLKAYDHEVLDESAKKIVEVAKSTNAKISGPIPLPTER 46
>sp|Q2JUX3|RS10_SYNJA 30S ribosomal protein S10 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpsJ PE=3 SV=1 Length = 105
Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/45 (53%), Positives = 33/45 (73%) Frame = +1
Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435 +QKIRI+LK+Y ++ + I+D ARRTE +GP+PLPTRRR Sbjct: 6 QQKIRIRLKAYDHRLLDTSCDKIVDTARRTEAVPVGPIPLPTRRR 50
>sp|Q2JMX6|RS10_SYNJB 30S ribosomal protein S10 OS=Synechococcus sp. GN=rpsJ PE=3 SV=1 Length = 105
Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/45 (51%), Positives = 33/45 (73%) Frame = +1
Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRRR 435 +QKIRI+LK+Y ++ + I+D ARRT+ +GP+PLPTRRR Sbjct: 6 QQKIRIRLKAYDHRLLDTSCDKIVDTARRTDAVPVGPIPLPTRRR 50
>sp|A6LLL2|RS10_THEM4 30S ribosomal protein S10 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsJ PE=3 SV=1 Length = 102
Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/43 (48%), Positives = 31/43 (72%) Frame = +1
Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432 QKIRI+LK+Y ++E+ K I++ ++T K+ GPVPLPT R Sbjct: 4 QKIRIRLKAYDHKLLDESAKKIVEVVKQTNAKVSGPVPLPTER 46
>sp|A3DJH1|RS10_CLOTH 30S ribosomal protein S10 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rpsJ PE=3 SV=1 Length = 103
Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/44 (47%), Positives = 33/44 (75%) Frame = +1
Query: 301 KQKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTRR 432 KQKIRI+LK++ ++++ + I++ A+RT K+ GPVPLPT R Sbjct: 4 KQKIRIRLKAFDHQVLDQSAEKIVETAKRTGAKVSGPVPLPTER 47
>sp|Q6MJ14|RS10_BDEBA 30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus GN=rpsJ PE=3 SV=1 Length = 105
Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/42 (50%), Positives = 32/42 (76%) Frame = +1
Query: 304 QKIRIKLKSYWVDRIEEAIKLILDAARRTETKIMGPVPLPTR 429 QKIRI+LK++ ++++ K I++ ARRT K+ GP+PLPTR Sbjct: 4 QKIRIRLKAFDHKLLDQSTKEIVETARRTGAKVAGPIPLPTR 45
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LMY6 |
Definition |
tr|B8LMY6|B8LMY6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
45 |
Score (bit) |
71.6 |
E-value |
2.0e-11 |
Report |
|