DK959014 |
Clone id |
TST39A01NGRL0003_I15 |
Library |
TST39 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_I15. 5' end sequence. |
Accession |
DK959014 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2221Contig1 |
Sequence |
CTTTACTCTAGCGCACTACAATATCTATAAAGGATGTTATGTCCAGCTTATCCAAATCCC ATCAAGAAGTCAAGGTTTTGATGACAATGAAACTGAAATTGCATTATGGTGAGAGAAGTA TGCTCGTTGCTGGTCTGAAATCCAGACACACATGCACTTTTACGAATATTTTGACAAAGA AATTCTTTACGGATTCTTGAAAGATTTGGCACTTCCTCAAAACATGTCCTTTGACCAGCA TGTGCATGTGGCCTTGTCTGGACTAAAAGCGGTGATAAGCCTTGAAGCCCAAACTGTTAG CAACAAAAACTGTTGCCCTTCTTTTAATGAACTGGACAAAGGACTCAAATCTGCTATTAG ATCAGATGAAGAAGCGATTAACAGAGGAAACCCTTTTCTCATCCATTCTGATGTCTCGTA TCTCACATTCGAGGGCTGGCATAAGACCCAAGAGAGCCACTGGAGAATAGCATTCAAGTT TCTGGATTCAGAAAGTGGAGTTGTGCTTTTATATGGTGATTCATCATATCTACACGAGAG CATTGCAGGGTGGTTTACAGGAGTTTTAGTTGAGCAAACAGCTCTGCTCATTCAAGCTCC TATTACACCATTGATTGATCTCAGTGGTGCGAGCGGGATAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7X2N3 |
Definition |
sp|Q7X2N3|SYV_SPHEL Valyl-tRNA synthetase OS=Sphingomonas elodea |
Align length |
46 |
Score (bit) |
31.6 |
E-value |
3.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3IRI1 |
Definition |
tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) |
Align length |
70 |
Score (bit) |
35.8 |
E-value |
2.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959014|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_I15, 5' (643 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein OS=Natro... 36 2.3 tr|A6REP5|A6REP5_AJECN Predicted protein OS=Ajellomyces capsulat... 35 3.0 tr|A7GWW5|A7GWW5_CAMC5 General glycosylation pathway protein OS=... 35 3.9 tr|A2FGJ9|A2FGJ9_TRIVA Putative uncharacterized protein OS=Trich... 35 5.1 tr|B0DKF7|B0DKF7_LACBS Protein disulfide isomerase OS=Laccaria b... 35 5.1 tr|A5DN45|A5DN45_PICGU Putative uncharacterized protein OS=Pichi... 34 6.7 tr|Q23RG1|Q23RG1_TETTH Putative uncharacterized protein OS=Tetra... 34 8.7 tr|B1RAJ9|B1RAJ9_CLOPE CapA domain protein OS=Clostridium perfri... 34 8.8 tr|B1BWV1|B1BWV1_CLOPE CapA domain protein OS=Clostridium perfri... 34 8.8 tr|A8TDA7|A8TDA7_METVO Fibrillarin-like protein OS=Methanococcus... 34 8.8
>tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP2342A PE=4 SV=1 Length = 601
Score = 35.8 bits (81), Expect = 2.3 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2
Query: 407 SDVSYLTFEGWHKTQESHWRIAFKFLDSESGVVLLYGDSSYLHESIAGWFTGVLVEQTAL 586 +D +Y+T E W + QE H + ++ D++SG + G + GWF+G V QTA Sbjct: 532 TDDNYITEEEWKEQQERHEELIEQYEDAQSGGGIDLG-------GLGGWFSG--VGQTAA 582
Query: 587 LIQAPITPLI 616 A + LI Sbjct: 583 AAGAGVLALI 592
>tr|A6REP5|A6REP5_AJECN Predicted protein OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=HCAG_08110 PE=4 SV=1 Length = 533
Score = 35.4 bits (80), Expect = 3.0 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 15/145 (10%) Frame = +2
Query: 248 VALSGLKAVISLEAQTVSNKNCCPSFNELDKGLKSAIRS-------------DEEAINRG 388 V +S L+A++S + + P+FN D+G+K A+R+ D+E +NR Sbjct: 231 VRVSQLEAILSKFKEEYN-----PNFN--DEGVKRAVRAWEDYAARGDTDSDDDETLNRD 283
Query: 389 NPFLIHSDV--SYLTFEGWHKTQESHWRIAFKFLDSESGVVLLYGDSSYLHESIAGWFTG 562 + D S + ++ W Q D ES + LLY ++YL +S+ +F Sbjct: 284 LDEICKPDSENSGIDWDHWENEQ-----------DVESDIGLLYKVAAYLPDSLINYFED 332
Query: 563 VLVEQTALLIQAPITPLIDLSGASG 637 +++ + LI I L D SG G Sbjct: 333 KVLQLRSFLISNGI--LADNSGDLG 355
>tr|A7GWW5|A7GWW5_CAMC5 General glycosylation pathway protein OS=Campylobacter curvus (strain 525.92) GN=Ccur92_04030 PE=4 SV=1 Length = 708
Score = 35.0 bits (79), Expect = 3.9 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +2
Query: 344 LKSAIRSDEEAINRGNPFLIHSDVSYLTFEG 436 + SAI DE IN GN F++ SDVS L++ G Sbjct: 593 IASAIAQDERGINLGNGFVLSSDVSTLSYNG 623
>tr|A2FGJ9|A2FGJ9_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3 GN=TVAG_114760 PE=4 SV=1 Length = 2035
Score = 34.7 bits (78), Expect = 5.1 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Frame = +2
Query: 158 FYEYFDKEILYGFLKDLALP---QNMSFDQHVHVALSGLKAVISLEAQTVSNKNCCPSFN 328 +Y+YFD LYGF+K+ P QN S +Q ++ L+ L ++ +N P+ N Sbjct: 248 YYDYFDVNGLYGFMKEKKFPIRIQNESQEQ-TNIFLAVLNRLL---------ENFAPTLN 297
Query: 329 ELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFEGWHKTQESHWRIAFK 478 + +S + S NP H+++ F+ + + ++++I K Sbjct: 298 QAISTFESQMAS--------NPSASHNEIISQIFDSFPRQANTYFQIMEK 339
>tr|B0DKF7|B0DKF7_LACBS Protein disulfide isomerase OS=Laccaria bicolor (strain S238N-H82) GN=LBPDI1 PE=4 SV=1 Length = 592
Score = 34.7 bits (78), Expect = 5.1 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 9/106 (8%) Frame = +2
Query: 326 NELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFEGWHKTQESHWR-IAFKFLDSESGV 502 +ELD G+ IR D A+ G P I+S S G++ W +A K DS++ Sbjct: 297 SELDTGILDKIRKDA-AVLLGTP-TIYSSSSPDLLLGYNIPSSVSWSLVALKDHDSQTPS 354
Query: 503 VLLYGDSSYLHESIAGWFTGVLVEQTALLIQ--------APITPLI 616 + +G S+ HE I W + T L Q AP PL+ Sbjct: 355 SIFHGSSTSTHEKINVWLLSHRLPTTLELTQDTFQAVMNAPHAPLV 400
>tr|A5DN45|A5DN45_PICGU Putative uncharacterized protein OS=Pichia guilliermondii GN=PGUG_04696 PE=4 SV=2 Length = 217
Score = 34.3 bits (77), Expect = 6.7 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Frame = +2
Query: 212 LPQNMSFDQHVHVALSGLKAVISLEAQ---TVSNKNCCPSFNELDKGLKSAIRSDEEAIN 382 LP N FD+HV LS K VI+ T P E GL + + DE N Sbjct: 25 LPTNYKFDKHVLQELS--KQVIANHPDGNATAIMNELAPRIKEAYPGLINDLNYDEWVYN 82
Query: 383 R-----GNPFLIHSDVS-YLTFEGWHKTQESHWRIAF 475 G F++H+ +S YL F G E H + F Sbjct: 83 NAGGAMGTMFILHASISEYLIFFGTAVGTEGHTGVHF 119
>tr|Q23RG1|Q23RG1_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00388280 PE=4 SV=1 Length = 1957
Score = 33.9 bits (76), Expect = 8.7 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = -3
Query: 287 LQGLSPLLVQTRPHAHAGQRTCFEEVPNLSR 195 LQG+SP +Q +P +++GQ+ C E N+S+ Sbjct: 1819 LQGISPSQIQCKPSSNSGQKRCINENNNISQ 1849
>tr|B1RAJ9|B1RAJ9_CLOPE CapA domain protein OS=Clostridium perfringens B str. ATCC 3626 GN=AC1_2064 PE=4 SV=1 Length = 404
Score = 33.9 bits (76), Expect = 8.8 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +2
Query: 320 SFNELDKGLKSAIRSDEEAINRGNPFLI---HSDVSYLTFEGWHKTQESHWRIAFKFLDS 490 S+N+LDKGL+ EE N G F++ H V Y KT+ S +++ + Sbjct: 221 SYNKLDKGLEEMKALVEEMKNEGAEFIVFGMHWGVEY-------KTEPSKYQVKIAEALN 273
Query: 491 ESGVVLLYGDSSYLHESI 544 E GV L+ G + ++ + I Sbjct: 274 EYGVDLILGSNPHVVQPI 291
>tr|B1BWV1|B1BWV1_CLOPE CapA domain protein OS=Clostridium perfringens E str. JGS1987 GN=AC3_2141 PE=4 SV=1 Length = 404
Score = 33.9 bits (76), Expect = 8.8 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +2
Query: 320 SFNELDKGLKSAIRSDEEAINRGNPFLI---HSDVSYLTFEGWHKTQESHWRIAFKFLDS 490 S+N+LDKGL+ EE N G F++ H V Y KT+ S +++ + Sbjct: 221 SYNKLDKGLEEMKALVEEMKNEGAEFIVFGMHWGVEY-------KTEPSKYQVKIAEALN 273
Query: 491 ESGVVLLYGDSSYLHESI 544 E GV L+ G + ++ + I Sbjct: 274 EYGVDLILGSNPHVVQPI 291
>tr|A8TDA7|A8TDA7_METVO Fibrillarin-like protein OS=Methanococcus voltae A3 GN=MvolDRAFT_0061 PE=4 SV=1 Length = 511
Score = 33.9 bits (76), Expect = 8.8 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +2
Query: 260 GLKAVISLEAQTVSNKNCCPSFNELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFE-- 433 GL V+S+ + +SN N C A ++ EAI +GN FL ++D +Y+ E Sbjct: 337 GLPRVLSIVKEELSNLNIC-----------LATKTQLEAIAKGNKFLTYNDKTYIYPETV 385
Query: 434 GWHKTQESHW 463 G + ++HW Sbjct: 386 GNYFMGDAHW 395
|