DK959026
Clone id TST39A01NGRL0003_J03
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_J03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCGAGCTTCTAATCGGCTGGGAAGCCCCACTGCGCGTGCACTTACTCTAATCTCGACTCC
TCAGAACAGCTCGATCAGCCTTGATTACTATTGGGCTCTTTCAGTCCACAGAAATTCCAT
GTATGAGGTCTTTCAGCTCAATTGGGTTCGGTAATTGATCGGTGAAGCTGCCCCTTCAAG
CTTAATTATGGTACTCTCAGCATGAGTACGGTAAGGTGTGATTAGCAGGACCTTATTACC
CACATGAAGTAGTAGGTTCAGGCTAAATACATAAAACCAGAGAGGTCAACAATTTGGCAT
CATGGGATCAACCTGTGCTGGCGTGCAATCCACCATGCCTAGAAGCCGCTTTGTGAAGCC
GTACGTGGAAGCCCCCCGCCAAGTGATCGGCTTCGACTTGTCGCCCAAAGGAGGAAAATC
GGAGGCAGTACTTATACCTGCCGATACTGATGATGATGATGTATGTAGGATCGATCCAAG
TGCAGTGATACACTCTAATTGCATGAATTCATGTTCAATTAGCTCCAAAACAGCTACCCA
CAAGGGTAAAAGCACCACTGTCACCTCCCCAAGATCTGCGCTACAGCAGCTGCTGCTTCC
TCCCCTCCTTCAATCAGAGCCAGCAGCCAAAGCTTGTGGCCTCTCACACGGACCCTTGCT
TCCAGCACCTATCTGCAAATCCCAATT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959026|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_J03, 5'
(687 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A7I9G8
Definition tr|A7I9G8|A7I9G8_METB6 ABC transporter related OS=Methanoregula boonei (strain 6A8)
Align length 67
Score (bit) 34.3
E-value 7.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959026|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_J03, 5'
(687 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7I9G8|A7I9G8_METB6 ABC transporter related OS=Methanoregula ... 34 7.7

>tr|A7I9G8|A7I9G8_METB6 ABC transporter related OS=Methanoregula
boonei (strain 6A8) GN=Mboo_1864 PE=3 SV=1
Length = 303

Score = 34.3 bits (77), Expect = 7.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2

Query: 278 QRGQQFGIMGSTCAGVQSTMPRSRFVKPYVEAPRQVIGFD--LSPKGGKSEAVLIPADT- 448
++G+ FG +G AG +TM V P +V G D ++P G K ++P +T
Sbjct: 28 KKGEIFGFLGPNGAGKTTTMRMIECVSPRTSGTLRVFGMDPEVNPAGIKQRIGVVPQETN 87

Query: 449 -DDDDVC 466
D D C
Sbjct: 88 LDPDFTC 94