DK959027 |
Clone id |
TST39A01NGRL0003_J04 |
Library |
TST39 |
Length |
710 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_J04. 5' end sequence. |
Accession |
DK959027 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL128Contig1 |
Sequence |
AGTGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGC GTCGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCA GGGATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAA GATCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGC AGTGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGA TTTTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGA CAACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCA GAAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGA GGCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAGGGA GACGGCAGCAAAGCTTGATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGAGCT TGCAGAAGCTATTGCAAACCTAGAGGTGCAGAAGCAGGAGACTTTGAAGAGCCTTGACAA GGGAGTCCAAGATCTAAGTGAGGAGATTATTGCTAAGGTCATTCCCTTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
141 |
Score (bit) |
159.0 |
E-value |
2.0e-38 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959027|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_J04, 5' (710 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 159 2e-38 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 94 6e-19 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 94 6e-19 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 92 3e-18 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 91 6e-18 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 86 2e-16 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 84 1e-15 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 81 5e-15 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 81 6e-15 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 79 2e-14 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 79 2e-14 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 76 2e-13 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 72 4e-12 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 72 4e-12 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 63 1e-09 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 61 5e-09 sp|P26681|ATPF_ENTHR ATP synthase B chain OS=Enterococcus hirae ... 54 8e-07 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 46 2e-04 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 44 7e-04 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 44 9e-04 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 43 0.001 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 43 0.002 sp|P95785|ATPF_STRMU ATP synthase B chain OS=Streptococcus mutan... 42 0.003 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1 41 0.007
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 159 bits (401), Expect = 2e-38 Identities = 76/141 (53%), Positives = 108/141 (76%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L+EQA A+++AARAE +A LNKMK+ET +++AKL E R++IE EL EA+ +LE QK++T Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDT 199
Query: 644 LKSLDKGVQDLSEEIIAKVIP 706 +KSLD + LS++I+ KV+P Sbjct: 200 IKSLDSQISALSDDIVKKVLP 220
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 94.4 bits (233), Expect = 6e-19 Identities = 52/140 (37%), Positives = 84/140 (60%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L + E L AR ++ ++E + +++++ EK +AEA L VQK+E Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEEA 132
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 LK+L+ V LS++I K++ Sbjct: 133 LKTLENQVDTLSDQIKVKLL 152
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 94.4 bits (233), Expect = 6e-19 Identities = 48/140 (34%), Positives = 87/140 (62%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L + E L AR + A++ +++ + + +++++ EK + EA L +QK+E Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEEA 132
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 LK+L+ V LS++I K++ Sbjct: 133 LKTLEDQVDTLSDQIKTKLL 152
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 92.0 bits (227), Expect = 3e-18 Identities = 46/137 (33%), Positives = 84/137 (61%) Frame = +2
Query: 293 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 472 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 473 QAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKS 652 Q E L R E A + + + E A++ +++ ++ EL +A A ++ QKQ TL++ Sbjct: 82 QYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAEIDQQKQATLQA 141
Query: 653 LDKGVQDLSEEIIAKVI 703 L+ V LSE+++AK++ Sbjct: 142 LEGQVSSLSEQLLAKLL 158
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 90.9 bits (224), Expect = 6e-18 Identities = 47/140 (33%), Positives = 82/140 (58%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FDF+ TLP++ + L+LM+ L+ +++KP+ K++D+R E I+ + + Sbjct: 18 EGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAE 77
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L Q E + AR + N + E + KL+E++++ + ELA A LE+QK E Sbjct: 78 LTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASATNKLELQKDEA 137
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 LKSL+ VQ LS +I+ K++ Sbjct: 138 LKSLESEVQTLSTKILEKLL 157
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 86.3 bits (212), Expect = 2e-16 Identities = 46/140 (32%), Positives = 85/140 (60%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 + +Q E L R E ++ ++E + +++++++ E + EA + L QKQ+ Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIKQAQKDTELLVNEATSQLNSQKQKA 137
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 L +L+ V L+E+I +K++ Sbjct: 138 LSALEDQVNTLTEQIKSKLL 157
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 83.6 bits (205), Expect = 1e-15 Identities = 42/139 (30%), Positives = 89/139 (64%) Frame = +2
Query: 287 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 466 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 467 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETL 646 + E ++ ++ E+ ++ +K +T + +L +++ + ++++I L +K++TL Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKTEHDIVNELIQTQNSTREFISKSIKELYRKKEQTL 134
Query: 647 KSLDKGVQDLSEEIIAKVI 703 K L++ ++LS++I K+I Sbjct: 135 KVLEEDTENLSDKIYLKLI 153
>sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Galdieria sulphuraria GN=atpG PE=3 SV=1 Length = 157
Score = 81.3 bits (199), Expect = 5e-15 Identities = 44/139 (31%), Positives = 82/139 (58%) Frame = +2
Query: 287 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 466 G +FDF+ TL IA EFLLL L+ I+++P++KV+D R++ IR+ L D+ +L Sbjct: 15 GGLFDFDATLSFIALEFLLLTSVLNLIYYQPISKVIDSREDYIRENLNKASLYLDQANEL 74
Query: 467 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETL 646 ++ E L AR E + + E ++A++ ++++ ++ + ++ E +K + + Sbjct: 75 TKKYELELITARKEAIKMVTTSQTEAQEFVNAQISQAQKEAQQLIQSSMMQFEKEKNKAI 134
Query: 647 KSLDKGVQDLSEEIIAKVI 703 SL+K V+ LSE+I K+I Sbjct: 135 YSLEKQVEQLSEQIKNKLI 153
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 80.9 bits (198), Expect = 6e-15 Identities = 40/140 (28%), Positives = 83/140 (59%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L + + Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKAND 77
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L ++ E L +R + + +++ + +K++E+++ ++ ++ L +QK++ Sbjct: 78 LTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQA 137
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 L++L+K V LS +I K++ Sbjct: 138 LQNLEKQVDILSNQIQIKLL 157
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 79.3 bits (194), Expect = 2e-14 Identities = 42/140 (30%), Positives = 79/140 (56%) Frame = +2
Query: 284 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 463 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 464 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 643 L Q E L A R ++ A + + + E +L E++ + + +A ++ QK Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQKAVA 135
Query: 644 LKSLDKGVQDLSEEIIAKVI 703 L++LD+ V LS +I+ K++ Sbjct: 136 LQALDQQVDALSHQILDKLL 155
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
170 |
Score (bit) |
214.0 |
E-value |
4.0e-54 |
Report |
 |