NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959039
Clone id TST39A01NGRL0003_J17
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_J17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCTCATGGCTCACTCATTGCGGCGCGTGTGCAAAACATTGCACCTCGCCCATGGCGAGG
AAACGAAGAAGCTCTTTGAGCTGGGACCCGTATCAGTGCAGACGGCTCTCTACGCGAAGG
CCTCGCAGGACGAGGTCGTGAAGAAGAAGAAGAAGAAGAAGAAAGAGAAGAAAAAGGAGA
AGAAGGGAGCTGCTGGCGCTGACGAATACGAGAAAGACAGGGCCCGCTTTAGTGATCTTG
TAGCAAAAGCCCTCAATGCACCTTCAGCTGTCAGACATGTCAGCCAGAAAGAGAGACTTA
GAGAGCAGGAGATGGCGAAGTATGGGCTCATGACAAAAGAGAGACAGATTGAGCTCGAGC
AAATCAAGGCTAGAGAGAAAGCCAAGGAGAAAGCCAAAAAGCAAAATCAAGAAGGAGAGG
AGGCTACCTTTGTCGAAGAGGACGAGGAGAAACGACGTCTTAAAAAAGAGGAGGGTATGA
GGCTTGCTAAGGAGTACAGCAGGTTTCTGATGCGTGAAGACCGAAAGCTTCATGCAGGTG
AAACCATCCGACTCAGATTGAAGAATGAGGCCATCGCTGCTTTGCCTCCTGGCCTTCAAG
AAGCTGCACGTGTACCCGACATGACCCCTTTCCCAGGCATCTCTCCGGCAACACTCACAC
CTCCTATACCTG
■■Homology search results ■■ -
sp_hit_id Q9H3S7
Definition sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor type 23 OS=Homo sapiens
Align length 31
Score (bit) 32.0
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959039|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_J17, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor ...    32   3.0  
sp|Q91Z80|LIPA4_RAT Liprin-alpha-4 (Fragment) OS=Rattus norvegic...    32   3.0  
sp|Q86UU5|GGN_HUMAN Gametogenetin OS=Homo sapiens GN=GGN PE=2 SV=2     32   4.0  
sp|Q6PB44|PTN23_MOUSE Tyrosine-protein phosphatase non-receptor ...    31   5.2  
sp|Q9KG45|GLMS_BACHD Glucosamine--fructose-6-phosphate aminotran...    30   8.8  

>sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor type
            23 OS=Homo sapiens GN=PTPN23 PE=1 SV=1
          Length = 1636

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 579  ALPPGLQEAARVPDMTPFPGISPATLTPPIP 671
            A PPGL  A+ +P+ TP P  SP  L+ P+P
Sbjct: 1524 AEPPGLPPAS-LPESTPIPSSSPPPLSSPLP 1553


>sp|Q91Z80|LIPA4_RAT Liprin-alpha-4 (Fragment) OS=Rattus norvegicus
           GN=Ppfia4 PE=1 SV=1
          Length = 1043

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = +3

Query: 531 HAGETIRLRLKNEAIAALPPGL--------QEAARVPDMTPFPGISPATLTPPI 668
           H G T  +R      A +PPGL        +E+A+     P PG+  AT TP +
Sbjct: 343 HVGSTTDVRFSLSTAAHVPPGLHRRYTALREESAKDWKPAPLPGVLAATTTPAL 396


>sp|Q86UU5|GGN_HUMAN Gametogenetin OS=Homo sapiens GN=GGN PE=2 SV=2
          Length = 652

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 585 PPGLQEAARVPDMTPFPGISPATLTP-PIP 671
           PPGLQE   +P  TP P + P  L P P+P
Sbjct: 431 PPGLQELPPLPPPTPPPTLQPPALQPTPLP 460


>sp|Q6PB44|PTN23_MOUSE Tyrosine-protein phosphatase non-receptor type
            23 OS=Mus musculus GN=Ptpn23 PE=1 SV=2
          Length = 1692

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 585  PPGLQEAARVPDMTPFPGISPATLTPPIP 671
            PPGL  A+ +P+ TP P  SP  L+ P+P
Sbjct: 1582 PPGLPPAS-LPESTPVPSSSPPPLSSPLP 1609


>sp|Q9KG45|GLMS_BACHD Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Bacillus halodurans
           GN=glmS PE=3 SV=3
          Length = 600

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 623 HVGYTCSFLKARRQSSDGLILQSESDGFTCMKL-SVFTHQKPAVLLSKPHTLLFFKTSFL 447
           H G   ++ + +R     + LQS++D    ++L   F H+  +V  +  HTL   K S+ 
Sbjct: 98  HNGVIENYEQLKRDYLQAVTLQSDTDTEVVVQLVERFVHEGQSVEAAFRHTLSLLKGSYA 157

Query: 446 LVLFDK 429
           + L DK
Sbjct: 158 IALLDK 163
tr_hit_id A9NRU0
Definition tr|A9NRU0|A9NRU0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 159
Score (bit) 102.0
E-value 3.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959039|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_J17, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRU0|A9NRU0_PICSI Putative uncharacterized protein OS=Picea...   102   3e-20
tr|B7FL59|B7FL59_MEDTR Putative uncharacterized protein OS=Medic...    95   5e-18
tr|Q5QMU6|Q5QMU6_ORYSJ cDNA clone:001-016-F02, full insert seque...    86   2e-15
tr|A7PZR0|A7PZR0_VITVI Chromosome chr15 scaffold_40, whole genom...    86   2e-15
tr|A2WQL5|A2WQL5_ORYSI Putative uncharacterized protein OS=Oryza...    86   2e-15
tr|Q9M0V5|Q9M0V5_ARATH Putative uncharacterized protein AT4g0540...    86   3e-15
tr|O49555|O49555_ARATH Putative uncharacterized protein F7J7.80 ...    84   8e-15
tr|B4F7S5|B4F7S5_MAIZE Putative uncharacterized protein OS=Zea m...    83   2e-14
tr|A4S3B2|A4S3B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.23 
tr|Q010P7|Q010P7_OSTTA Chromosome 10 contig 1, DNA sequence OS=O...    35   5.6  

>tr|A9NRU0|A9NRU0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 257

 Score =  102 bits (253), Expect = 3e-20
 Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
 Frame = +3

Query: 213 KDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXXXXXXXXXXX 392
           K+  +  DL+ K ++AP+ VR++ +K+R+RE E  K GL++K+RQ EL            
Sbjct: 79  KESQQLKDLIKKCIDAPTPVRYLKEKDRIREMEREKLGLISKDRQRELDMEKQMKKKSKE 138

Query: 393 XXXXXXXXXXXTFVXXXXXXXXXXXXX------GMRLAKEYSRFLMREDRKLHAGETIRL 554
                        V                   G  LAKEYSR L R+ R   A E++RL
Sbjct: 139 GETVTESKEQLDPVALGIVDKDEIPSFEFTVEEGRHLAKEYSRVLARDSRARQAEESMRL 198

Query: 555 RLKNEAIAALPPGLQEAARVPDMTPFP-GISPATLTPPI 668
           +LKN+AIAALPP L+EAA VPD+TPFP     A LTPPI
Sbjct: 199 KLKNDAIAALPPRLREAALVPDLTPFPANRHRAYLTPPI 237


>tr|B7FL59|B7FL59_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 243

 Score = 94.7 bits (234), Expect = 5e-18
 Identities = 65/166 (39%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
 Frame = +3

Query: 195 GADEYEKDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXXXXX 374
           GA    +++     L  + LNAP+ +R +  K+R RE E  K GL++K+RQIEL      
Sbjct: 57  GAPTGSREKQERERLYEQCLNAPTPLRFLKPKQRAREAERGKLGLISKDRQIELDMMKKT 116

Query: 375 XXXXXXXXXXXXXXXXXTFVXXXXXXXXXXXXX-------GMRLAKEYSRFLMREDRKLH 533
                                                   GM+LAKEYSR LMR+ R   
Sbjct: 117 NAKFRVSEKPTIMGTPGLGYITLGLVDAEKLPKYELTKEDGMKLAKEYSRVLMRKHRARQ 176

Query: 534 AGETIRLRLKNEAIAALPPGLQEAARVPDMTPFP-GISPATLTPPI 668
           A ET  L +K EAI ALP GL+EAA VPD+TPFP     ATLTPPI
Sbjct: 177 AAETNLLMMKKEAIEALPGGLKEAALVPDLTPFPVNRFMATLTPPI 222


>tr|Q5QMU6|Q5QMU6_ORYSJ cDNA clone:001-016-F02, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0054L14.6 PE=2
           SV=1
          Length = 266

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 62/172 (36%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
 Frame = +3

Query: 186 GAAGADEYEKDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXX 365
           G  G     +   R + +    LNA + +RH+S KERLRE +  + GL++KERQ EL   
Sbjct: 74  GGGGGRGRREAIERITQIAESCLNASTPLRHLSPKERLREAKREELGLISKERQRELDLA 133

Query: 366 XXXXXXXXXXXXXXXXXXXXT----------FVXXXXXXXXXXXXXGMRLAKEYSRFLMR 515
                                                         G RLAK+YS+ LMR
Sbjct: 134 KAKAKSKGTREGDGGRVLMGPPGLDYISLGLVDEDAIPKYELTVEDGRRLAKQYSQVLMR 193

Query: 516 EDRKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFPGIS-PATLTPPI 668
             R     E+  L LK EAIAALP  L+ AA +PDMTPFP     ATLTPPI
Sbjct: 194 RHRARQTAESSLLSLKKEAIAALPEKLRAAAMIPDMTPFPANRYMATLTPPI 245


>tr|A7PZR0|A7PZR0_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026972001
           PE=4 SV=1
          Length = 244

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 10/170 (5%)
 Frame = +3

Query: 189 AAGADEYEKDRAR--FSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXX 362
           AA AD   ++ A+     L    L AP+ +R+++ K++ RE+E  K GL +  R++EL  
Sbjct: 54  AAAADRGPRNEAKVKMEQLENACLTAPTPIRYLTPKQKKREEEREKMGLTSNARRVELEM 113

Query: 363 XXXXXXXXXXXXXXXXXXXXXTFVXXXXXXXXXXXXX-------GMRLAKEYSRFLMRED 521
                                  +                    G RLAKEYSR LMR  
Sbjct: 114 LKKNKSKKSELDSPMIIGTPGLDLISLGLVDAESIPKYELTVEDGRRLAKEYSRVLMRRH 173

Query: 522 RKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFPGIS-PATLTPPI 668
           R   A E+  LRLK EAI ALP  L+ AA VPD+TPFP     ATLTPPI
Sbjct: 174 RARQAAESTILRLKKEAIEALPENLKAAALVPDLTPFPANRFMATLTPPI 223


>tr|A2WQL5|A2WQL5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02151 PE=4 SV=1
          Length = 266

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 62/172 (36%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
 Frame = +3

Query: 186 GAAGADEYEKDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXX 365
           G  G     +   R + +    LNA + +RH+S KERLRE +  + GL++KERQ EL   
Sbjct: 74  GGGGGRGRREAIERITQIAESCLNASTPLRHLSPKERLREAKREELGLISKERQRELDLA 133

Query: 366 XXXXXXXXXXXXXXXXXXXXT----------FVXXXXXXXXXXXXXGMRLAKEYSRFLMR 515
                                                         G RLAK+YS+ LMR
Sbjct: 134 KAKAKSKGTREGDGGRVLMGPPGLDYISLGLVDEDAIPKYELTVEDGRRLAKQYSQVLMR 193

Query: 516 EDRKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFPGIS-PATLTPPI 668
             R     E+  L LK EAIAALP  L+ AA +PDMTPFP     ATLTPPI
Sbjct: 194 RHRARQTAESSLLSLKKEAIAALPEKLRAAAMIPDMTPFPANRYMATLTPPI 245


>tr|Q9M0V5|Q9M0V5_ARATH Putative uncharacterized protein AT4g05400
           OS=Arabidopsis thaliana GN=At4g05400 PE=2 SV=1
          Length = 250

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 65/178 (36%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
 Frame = +3

Query: 186 GAAGA----DEYEKDRARFSD----LVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKE 341
           G  GA    +E  K + R SD    L  + LNAP  VR+++ +E  RE +  K GL++KE
Sbjct: 52  GGGGAPVEGEEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKE 111

Query: 342 RQIELXXXXXXXXXXXXXXXXXXXXXXX--------TFVXXXXXXXXXXXXXGMRLAKEY 497
           +Q ++                                F              G RLAKEY
Sbjct: 112 KQRDMEIQKKGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEY 171

Query: 498 SRFLMREDRKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFP-GISPATLTPPI 668
           S+ LMRE R+  A ET  L LK  AI ALP  L++AA  PD+TPFP     ATLTPPI
Sbjct: 172 SKVLMREHRERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPI 229


>tr|O49555|O49555_ARATH Putative uncharacterized protein F7J7.80
           (Putative uncharacterized protein AT4g21140)
           OS=Arabidopsis thaliana GN=AT4g21140 PE=2 SV=1
          Length = 228

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 55/158 (34%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
 Frame = +3

Query: 186 GAAGADEYEKDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXX 365
           G  G DE +K + R SD   + +NAP  VR++  KER RE    K GL++K RQ E+   
Sbjct: 55  GGRGGDEVDKGKGRISD---QCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQ 111

Query: 366 XXXXXXXXXXXXXXXXXXXX--------TFVXXXXXXXXXXXXXGMRLAKEYSRFLMRED 521
                                        F              G+RLAKEYSR LMRE 
Sbjct: 112 KKGGSFTMGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREH 171

Query: 522 RKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFP 635
           R     E   ++++N A+ ALP  L++AA V D+TPFP
Sbjct: 172 RARRVAEISLMKMRNAAVEALPENLKKAALVRDLTPFP 209


>tr|B4F7S5|B4F7S5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 265

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 63/174 (36%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
 Frame = +3

Query: 186 GAAGADEYEKDRARFSDLVAKALNAPSAVRHVSQKERLREQEMAKYGLMTKERQIELXXX 365
           G  G     +   R   +    LNA + +RH+  KERLRE +  + GL++KERQ EL   
Sbjct: 71  GGGGGRGRREAIERIIQISESCLNASTPLRHLPLKERLREAKREELGLVSKERQRELDIA 130

Query: 366 XXXXXXXXXXXXXXXXXXXXT------------FVXXXXXXXXXXXXXGMRLAKEYSRFL 509
                                                           G RLAKEYSR L
Sbjct: 131 KAKSKAKSKGPGGDDGDRVLMGPPGLDYISLGLVDEEAIPKYELTVEDGRRLAKEYSRVL 190

Query: 510 MREDRKLHAGETIRLRLKNEAIAALPPGLQEAARVPDMTPFPGIS-PATLTPPI 668
           MR  R     E++ L LK EAI ALP  L+ AA VPDMTPFP     ATLTPPI
Sbjct: 191 MRRHRARQTAESMLLTLKKEAIDALPEKLRAAAMVPDMTPFPANRYMATLTPPI 244


>tr|A4S3B2|A4S3B2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_25995 PE=4 SV=1
          Length = 134

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 486 AKEYSRFLMREDRKLHAGETIRLRLKNEAIAALPPG-LQEAARVPDMTPFPGISPATL-T 659
           AK YSR  MR +R   A    ++R+K  AIAALP G  ++AA V D   FP      + T
Sbjct: 49  AKAYSREKMRAERAFAADINEKIRIKKAAIAALPAGATRDAAMVEDEDLFPLKRKLPMYT 108

Query: 660 PPIP 671
           P IP
Sbjct: 109 PAIP 112


>tr|Q010P7|Q010P7_OSTTA Chromosome 10 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot10g00280 PE=4 SV=1
          Length = 164

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 486 AKEYSRFLMREDRKLHAGETIRLRLKNEAIAALPPG-LQEAARVPDMTPFP-GISPATLT 659
           AK YSR  MR +R        ++R+K  A+ ALP G +++AA V D   FP      + T
Sbjct: 79  AKAYSREKMRAERAFAKDINEKIRIKMAAVEALPAGAVRDAAMVEDDELFPLKRKLPSYT 138

Query: 660 PPIP 671
           P IP
Sbjct: 139 PAIP 142