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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959067
Clone id TST39A01NGRL0003_K23
Library
Length 652
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_K23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGGACGTCTCCGGCCTGCACATCACCAGCGATGGCCGCGCCACTCATCCGGCCGCCCC
CTCTCCGCCAAAGCTGAGGCTCATGAAGGTTGGCTACTACGCTGCCCTGCTGGGCATCGC
CGCCTTCAGCTGCATGTGGGTTCTTTGGTGGCTCCTCTCCAGCGAGCCCGCCGACTCGCC
GGACGGCCACTACCTGGACCGCCTCGACAAGCACATCCCCTCCCGCTTTTTCCGCACAGA
TGGCTACTACGGCTCCGTCCTCATCTACCAAAGCGCTCCATTCATCATCGTGGCCCTCCT
CAGCCTCGTCGTCGTCGAGCTCAGGAAGAAGTTGAATTCCTCATCAAGCCATGAAACTGA
AAAGGGAATAAGCAAAAGCTCTCCAAGTCTCACGACTTACCCGCTCGTGATCAAGAGTTT
CATGGGAGTGCTCACAAGTGCAGACGTTCTCTTCATTCTAGGGATCCTCTTCCTTGTCGC
CTACACTTTTGGGAGACAATGCCACTTGTCCTTCCAAGACCTTGAGAGAGAATATAAGGA
GAACCCTAGCGAATTCGATGACTCTNTGGTGATCATAAAGTTTGCATATGCTGCTTATTA
CATGGGACGATCGGCTATGATACCATTTTCTCTGCTTTGGATCCCTGTATCA
■■Homology search results ■■ -
sp_hit_id Q9ZLR4
Definition sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514 OS=Helicobacter pylori J99
Align length 123
Score (bit) 34.3
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959067|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_K23, 5'
         (652 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514 OS=Helico...    34   0.59 
sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida...    32   2.9  
sp|P40419|GLCU_BACME Probable glucose uptake protein glcU OS=Bac...    31   5.0  
sp|Q8K4F2|LX15B_RAT Arachidonate 15-lipoxygenase type II OS=Ratt...    31   6.5  
sp|P80370|DLK1_HUMAN Protein delta homolog 1 OS=Homo sapiens GN=...    30   8.5  

>sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514
           OS=Helicobacter pylori J99 GN=jhp_0514 PE=3 SV=1
          Length = 349

 Score = 34.3 bits (77), Expect = 0.59
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
 Frame = +2

Query: 245 YYGSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSH--ETEKGISK-----SSPSLTTYP 403
           Y GS +I++    I    LS ++  L+  +  + SH      G+SK     S+ S+T Y 
Sbjct: 76  YKGSNVIFE----INFEKLSALIKWLKGTITENLSHFPAIHDGVSKFLENFSAASITGYL 131

Query: 404 LVIKSFMGVLTS---ADVLFILGILFLVAYTFGRQCHLSFQD-LEREYKENPSEFDDSXV 571
           L + S++G  +     D LFILG+LF   Y +G + +  F   L  E  ++   F++   
Sbjct: 132 LKVSSYIGKYSLKLVTDALFILGLLFFFFY-YGEKFYRYFLGVLPLEMNQSKKIFEEVAG 190

Query: 572 IIK 580
           I++
Sbjct: 191 ILR 193


>sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida
           glabrata GN=RIX1 PE=3 SV=1
          Length = 767

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +2

Query: 299 LSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGVL 433
           LS++VV+++K LNS+S++   KG   +    T  PLV+ ++ G L
Sbjct: 44  LSVLVVKIQKLLNSNSNYSIWKGCHAAVVICTYNPLVLMAYGGKL 88


>sp|P40419|GLCU_BACME Probable glucose uptake protein glcU
           OS=Bacillus megaterium GN=glcU PE=2 SV=1
          Length = 286

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +2

Query: 365 GISKSSPSLTTYPLVIKSFMGVLT----SADVLFILGILFLVAYTFGRQCHLSFQDLERE 532
           G+SK+ P  T   LV  S  GV+     S     ILG+L L+    G          E+E
Sbjct: 83  GVSKTMPISTGLQLVSTSLFGVIVFHEWSTKTSIILGVLALIFIIVGIVLASLQSKEEKE 142

Query: 533 YKENPSEFDDSXVIIKFAYAAY 598
            +E    F    VI+  +   Y
Sbjct: 143 AEEGKGNFKKGIVILLISTVGY 164


>sp|Q8K4F2|LX15B_RAT Arachidonate 15-lipoxygenase type II OS=Rattus
           norvegicus GN=Alox15b PE=2 SV=1
          Length = 677

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  PSPPKLRLMKVGYYAALLGIAAFSCMWVLWWLLSSEPAD-SPDGHYLD-RLDKHIPSR 226
           P   K +    G+ A L  + A   + +  WLLS EP D  P GHY D    + +P R
Sbjct: 579 PPTSKGQASPEGFIATLPAVNATCDVIIALWLLSKEPGDRRPLGHYPDEHFTEEVPRR 636


>sp|P80370|DLK1_HUMAN Protein delta homolog 1 OS=Homo sapiens
           GN=DLK1 PE=1 SV=2
          Length = 383

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 362 KGISKSSPSLTTYPLVIKSFMGVLTSADVLFILGILFL 475
           K ++K +P LT    +  + +GVLTS  VL  +GI+FL
Sbjct: 290 KELNKKTPLLTEGQAICFTILGVLTSLVVLGTVGIVFL 327
tr_hit_id A9SL39
Definition tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane component OS=Physcomitrella patens subsp. patens
Align length 175
Score (bit) 56.2
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959067|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_K23, 5'
         (652 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane compo...    56   2e-06
tr|A7PCT0|A7PCT0_VITVI Chromosome chr17 scaffold_12, whole genom...    45   0.003
tr|A9U5F8|A9U5F8_PHYPA Ferric reductase-like transmembrane compo...    45   0.005
tr|A9RKK9|A9RKK9_PHYPA Ferric reductase like transmembrane compo...    45   0.005
tr|Q813N9|Q813N9_BACCR Hypothetical Membrane Spanning Protein OS...    41   0.056
tr|B7ITH3|B7ITH3_BACCE Putative uncharacterized protein OS=Bacil...    41   0.056
tr|B7HJG3|B7HJG3_BACCE Putative uncharacterized protein OS=Bacil...    41   0.056
tr|B5UVD2|B5UVD2_BACCE Putative uncharacterized protein OS=Bacil...    41   0.073
tr|A8S154|A8S154_9CLOT Putative uncharacterized protein OS=Clost...    39   0.36 
tr|Q63CB5|Q63CB5_BACCZ Putative uncharacterized protein ycgQ OS=...    37   0.81 
tr|Q6JHP9|Q6JHP9_9PSEU Putative transporter OS=Saccharopolyspora...    37   0.81 
tr|B7HNJ5|B7HNJ5_BACCE Putative uncharacterized protein OS=Bacil...    37   0.81 
tr|B5V490|B5V490_BACCE Putative uncharacterized protein OS=Bacil...    37   0.81 
tr|B6SW74|B6SW74_MAIZE Ferric reductase-like transmembrane compo...    37   0.81 
tr|B7PKK2|B7PKK2_IXOSC Transporter, putative OS=Ixodes scapulari...    37   0.81 
tr|Q4MRI4|Q4MRI4_BACCE YcgQ-like protein OS=Bacillus cereus G924...    37   1.1  
tr|B8A3B5|B8A3B5_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.1  
tr|Q739L9|Q739L9_BACC1 Putative uncharacterized protein OS=Bacil...    37   1.4  
tr|A9VRU9|A9VRU9_BACWK Putative uncharacterized protein OS=Bacil...    37   1.4  
tr|Q81RJ2|Q81RJ2_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|A0RD41|A0RD41_BACAH Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B7JKP2|B7JKP2_BACCE Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B3ZSH6|B3ZSH6_BACCE Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B3Z9K8|B3Z9K8_BACCE Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B3Z0Y0|B3Z0Y0_BACCE Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B3J8W9|B3J8W9_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B1UNB2|B1UNB2_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B1GGR5|B1GGR5_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B1EX19|B1EX19_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  
tr|B0QF22|B0QF22_BACAN Putative uncharacterized protein OS=Bacil...    36   2.3  

>tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_165498 PE=4 SV=1
          Length = 760

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
 Frame = +2

Query: 137 WVLWWLLSSEPADSPDGHYLDRLDKHIPSRFFRTDGYYGSVLIYQSAPFIIVALLSLVVV 316
           WV+ W L   P D       D +++   S+F   +G +    +  S P I+ AL +L+ +
Sbjct: 24  WVVEWFLY--PTDRWTSWKADAIEE-TNSKFLELNGPF---FLMWSFPVILFALFALLYL 77

Query: 317 ELRKKLNS---SSSHETEKGISKSSPSLTTYPLVIKSFMGVLTSADVLFILGILFLVAYT 487
           E+ ++L +   SS  +  K   +    L T P+++KS +GVLT  D+L I  ++F   + 
Sbjct: 78  EVDQRLKAKKESSCTDVPKW-KRVWLRLRTQPILVKSLLGVLTGVDLLVISFVVFATMWI 136

Query: 488 FGRQCHLSFQDLEREYKENPSEFDDSXVIIKFAYAAYYMGRSAMIPFSLLWIPVS 652
           F +      ++++R    N  +      +IK      + GR+  +P +LL+IPVS
Sbjct: 137 FVKPLIPMLEEVDR----NTMKPGIDRWMIKVGRVGTWTGRAWYLPMALLFIPVS 187


>tr|A7PCT0|A7PCT0_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015996001
           PE=4 SV=1
          Length = 692

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 36/136 (26%), Positives = 65/136 (47%)
 Frame = +2

Query: 242 GYYGSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSF 421
           GYYG   +  + P I +A +  V ++L+       S E+ +  ++ S S+ + PLV+ ++
Sbjct: 49  GYYGLNFVVYTFPVIALAAIGFVYLDLQ-------SRESRRRQARRSASVLSNPLVVNNY 101

Query: 422 MGVLTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSXVIIKFAYAAYY 601
           +GVL++ ++L +      +A+TF    H+S  D E+       +        KF   A  
Sbjct: 102 LGVLSALEILAVSLFFLYLAWTF--YVHIS-NDFEKMVPAKSLKRQ-----FKFLRVATR 153

Query: 602 MGRSAMIPFSLLWIPV 649
            G  A    +LL +PV
Sbjct: 154 FGLLAEACLALLLLPV 169


>tr|A9U5F8|A9U5F8_PHYPA Ferric reductase-like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_173734 PE=4 SV=1
          Length = 782

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 34/134 (25%), Positives = 74/134 (55%)
 Frame = +2

Query: 251 GSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGV 430
           G +L+  ++P +++ LL+++ +E+  ++ + +  +     +K   SL  +PL I  +MG+
Sbjct: 100 GGLLVLFASPLLVLTLLAIINLEVSSRMVTFNREK-----AKGRASLQKHPLFIGGWMGI 154

Query: 431 LTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSXVIIKFAYAAYYMGR 610
           +++A+ L+IL  LFLV +T+    +L  +D  R +     +  ++    K    A ++G 
Sbjct: 155 VSAAEFLWIL--LFLVMFTWIMGNYL-IRD-SRHFDVTSLKPVETVWSKKLKRTASHLGF 210

Query: 611 SAMIPFSLLWIPVS 652
             +I  + L++PVS
Sbjct: 211 FGLICLNFLFLPVS 224


>tr|A9RKK9|A9RKK9_PHYPA Ferric reductase like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115851 PE=4 SV=1
          Length = 666

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 34/132 (25%), Positives = 62/132 (46%)
 Frame = +2

Query: 257 VLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGVLT 436
           + +  S P I++ +++   + ++++  S       +   +    L T PLV+  F+GVL 
Sbjct: 1   MFVLYSMPVIVLTIIATAYLAIKQQYPSDLRASWFRRFCRL---LWTRPLVVNEFLGVLN 57

Query: 437 SADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSXVIIKFAYAAYYMGRSA 616
             D+L IL  +F+V +    +     + L      NP        ++K+      +GR A
Sbjct: 58  GFDLLVILSTIFVVLWMVLNELLPQLRSLH----GNP-----MAGLLKWKPIGVVLGRVA 108

Query: 617 MIPFSLLWIPVS 652
           ++P SLL IPVS
Sbjct: 109 VLPISLLLIPVS 120


>tr|Q813N9|Q813N9_BACCR Hypothetical Membrane Spanning Protein
           OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
           GN=BC_2037 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.056
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 353
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B7ITH3|B7ITH3_BACCE Putative uncharacterized protein OS=Bacillus
           cereus G9842 GN=BCG9842_B3267 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.056
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 353
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B7HJG3|B7HJG3_BACCE Putative uncharacterized protein OS=Bacillus
           cereus B4264 GN=BCB4264_A2042 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.056
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 353
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B5UVD2|B5UVD2_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH1134 GN=BCAH1134_2034 PE=4 SV=1
          Length = 289

 Score = 40.8 bits (94), Expect = 0.073
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 353
           V  KE     E N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKERNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|A8S154|A8S154_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_05857 PE=4
           SV=1
          Length = 146

 Score = 38.5 bits (88), Expect = 0.36
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = -1

Query: 550 ARVLLIFSLKVLEGQVALSPKSVGDKEEDP*NEENVCTCEHSHETLDHER 401
           A+VL       L G  A+SP++   K ED  N+E  CTC H H  +  ER
Sbjct: 16  AQVLKDLGKPFLSGTGAVSPRNSKVKGEDHMNQEEGCTCRHKHREVTEER 65


>tr|Q63CB5|Q63CB5_BACCZ Putative uncharacterized protein ycgQ
           OS=Bacillus cereus (strain ZK / E33L) GN=ycgQ PE=4 SV=1
          Length = 289

 Score = 37.4 bits (85), Expect = 0.81
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 353
           V  KE     E++ C C+HSH   DH +     W +AF+Y+LF F
Sbjct: 53  VFQKEHQKEREQHNCGCDHSHCGHDHSKDENTWWKKAFSYTLFCF 97