DK959071 |
Clone id |
TST39A01NGRL0003_L03 |
Library |
TST39 |
Length |
563 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_L03. 5' end sequence. |
Accession |
DK959071 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL307Contig1 |
Sequence |
AAATTTATCTGTTGCGCCATCGCATCGGTCATAAGAAGCAATTCCTTGTCGCCACAACTT CTCCTCTTCGTCCTGCCTGCCTTCTTTTAATTCCCTTTCTCAGCACCATTCCTGTTACAT CCCTCTCTTGCACCATGGCCAAGGATCCCGTCCGCGTTCTTGTCACAGGAGCTGCAGGGC AAATTGGATATGCCCTAGTTCCAATGATAGCGAGGGGAGTGATGTTGGGACCGGACCAGC CCATTATCTTGCACATGCTGGATATTCCTCCAGCTGCTGAGGCTTTGAATGGTGTCCAGA TGGAGCTTGTCGATGCAGCATTCCCTCTCCTTAAGGATGTTGTTGCCACCACTGATGTCG TGGAGGCTTGCAAGGGTGTGAACATTGCAATCATGGTTGGGGGCTTTCCTCGTAAAGAGG GCATGGAGAGGAAGGATGTCATGTCGAATAATGTGTCCATATACGAGTAGCAAGCATCAA CGTTGGAAGAACATGCAGCACAAGACTTGAAGGTTTTAGTAGTTGCCAATCCTGCAAACA CCAACGCCCTCATTTTGAAGGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48905 |
Definition |
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa |
Align length |
143 |
Score (bit) |
249.0 |
E-value |
5.0e-66 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959071|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_L03, 5' (563 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medica... 249 5e-66 sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea ma... 247 3e-65 sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Ara... 244 3e-64 sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza ... 243 6e-64 sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Ara... 243 6e-64 sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesemb... 242 8e-64 sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta v... 240 4e-63 sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyost... 163 5e-40 sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium viol... 160 4e-39 sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidur... 154 4e-37 sp|A5G320|MDH_ACICJ Malate dehydrogenase OS=Acidiphilium cryptum... 154 4e-37 sp|Q0K8F5|MDH_RALEH Malate dehydrogenase OS=Ralstonia eutropha (... 153 6e-37 sp|A1K5Q9|MDH_AZOSB Malate dehydrogenase OS=Azoarcus sp. (strain... 152 8e-37 sp|Q1IWC9|MDH_DEIGD Malate dehydrogenase OS=Deinococcus geotherm... 152 1e-36 sp|Q21K60|MDH_SACD2 Malate dehydrogenase OS=Saccharophagus degra... 152 1e-36 sp|Q46YU4|MDH_RALEJ Malate dehydrogenase OS=Ralstonia eutropha (... 152 1e-36 sp|Q9RXI8|MDH_DEIRA Malate dehydrogenase OS=Deinococcus radiodur... 152 1e-36 sp|Q2YAQ4|MDH_NITMU Malate dehydrogenase OS=Nitrosospira multifo... 151 2e-36 sp|A5WGM2|MDH_PSYWF Malate dehydrogenase OS=Psychrobacter sp. (s... 150 4e-36 sp|Q4FQU7|MDH_PSYA2 Malate dehydrogenase OS=Psychrobacter arctic... 150 4e-36 sp|Q54VM2|MDHC_DICDI Probable malate dehydrogenase 3 OS=Dictyost... 150 4e-36 sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha... 149 7e-36 sp|Q0ABE6|MDH_ALHEH Malate dehydrogenase OS=Alkalilimnicola ehrl... 149 7e-36 sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echino... 148 2e-35 sp|P10584|MDH_THETH Malate dehydrogenase OS=Thermus thermophilus... 148 2e-35 sp|Q5SKV7|MDH_THET8 Malate dehydrogenase OS=Thermus thermophilus... 148 2e-35 sp|P61977|MDH_THET2 Malate dehydrogenase OS=Thermus thermophilus... 148 2e-35 sp|Q47C34|MDH_DECAR Malate dehydrogenase OS=Dechloromonas aromat... 148 2e-35 sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo s... 148 2e-35 sp|Q7YRU4|MDHC_FELCA Malate dehydrogenase, cytoplasmic OS=Felis ... 148 2e-35
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Length = 332
Score = 249 bits (637), Expect = 5e-66 Identities = 128/143 (89%), Positives = 135/143 (94%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQP+ILHMLDI PAAE+LNGV+MELVD Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTDVVEAC GVNIA+MVGGFPRKEGMERKDVMS NVSIY+ QAS LE+H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAANCKVLVVANPANTNALILKE 143
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Length = 332
Score = 247 bits (630), Expect = 3e-65 Identities = 126/143 (88%), Positives = 134/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPAAEALNGV+MELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMS NVSIY+ QAS LE H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Length = 332
Score = 244 bits (622), Expect = 3e-64 Identities = 122/143 (85%), Positives = 133/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIPPAAEALNGV+MEL+D Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTD VE C GVN+A+MVGGFPRKEGMERKDVMS NVSIY+ QA+ LE+H Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Length = 332
Score = 243 bits (619), Expect = 6e-64 Identities = 122/143 (85%), Positives = 133/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPA E+LNG++MELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK +VATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMS NVSIY+ QAS LE H Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Length = 332
Score = 243 bits (619), Expect = 6e-64 Identities = 124/143 (86%), Positives = 133/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIP AAEALNGV+MELVD Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTD VEAC GVN+A+MVGGFPRKEGMERKDVMS NVSIY+ QAS LE+H Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Length = 332
Score = 242 bits (618), Expect = 8e-64 Identities = 122/143 (85%), Positives = 133/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MA +P+RVLVTGAAGQIGYALVPMIARG+MLG +QP+ILHMLDIPPAAEALNGV+MELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTD EACKGVN+A+MVGGFPRKEGMERKDVMS NVSIY+ QAS LE+H Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Length = 332
Score = 240 bits (612), Expect = 4e-63 Identities = 122/143 (85%), Positives = 133/143 (93%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MA +P+RVLVTGAAGQIGYALVPMIARGVMLG +QP+ILHMLDIPPAAEALNGV+MELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AAFPLLK VVATTDV EACKGVN+A+MVGGFPRKEGMERKDVM NVSIY+ QAS LE++ Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 495 AAQDLKVLVVANPANTNALILKE 563 AA + KVLVVANPANTNALILKE Sbjct: 121 AAPNCKVLVVANPANTNALILKE 143
>sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1 Length = 391
Score = 163 bits (413), Expect = 5e-40 Identities = 81/135 (60%), Positives = 105/135 (77%) Frame = +3
Query: 147 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVDAAFP 326 P++VLVTGAAGQI Y+L+ MIA G M GP QP+ILH+LDIP A+AL GV MEL D ++P Sbjct: 61 PIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYP 120
Query: 327 LLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEHAAQD 506 LL+ VVATTD+ A +N+AI+VG FPR GM+RKD++ NVSI++ Q L ++A++ Sbjct: 121 LLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRG 180
Query: 507 LKVLVVANPANTNAL 551 +KVLVV NPANTNAL Sbjct: 181 VKVLVVGNPANTNAL 195
>sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1 Length = 326
Score = 160 bits (405), Expect = 4e-39 Identities = 84/138 (60%), Positives = 101/138 (73%) Frame = +3
Query: 141 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVDAA 320 K PVRV VTGAAGQIGY+L+ IA G MLG DQP+ILH+LD+P A AL GV MEL D A Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCA 61
Query: 321 FPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEHAA 500 FPLL +VAT D A K V +A++VG PR +GMERKD++ N +I+ Q L +HAA Sbjct: 62 FPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAA 121
Query: 501 QDLKVLVVANPANTNALI 554 +D+KVLVV NPANTNA I Sbjct: 122 RDVKVLVVGNPANTNAWI 139
>sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1 Length = 327
Score = 154 bits (388), Expect = 4e-37 Identities = 81/140 (57%), Positives = 100/140 (71%) Frame = +3
Query: 135 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVQMELVD 314 MAK P+RV VTGAAGQIGY+L+ IA G MLG DQP+IL +LD+P A A+ GV MEL D Sbjct: 1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELED 60
Query: 315 AAFPLLKDVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSNNVSIYE*QASTLEEH 494 AFPLL VV T D A K ++A++VG PR +GMERKD++ N I+ Q L+E Sbjct: 61 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEV 120
Query: 495 AAQDLKVLVVANPANTNALI 554 A++D+KVLVV NPANTNA I Sbjct: 121 ASRDVKVLVVGNPANTNAYI 140
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FT00 |
Definition |
tr|Q9FT00|Q9FT00_CICAR Malate dehydrogenase OS=Cicer arietinum |
Align length |
143 |
Score (bit) |
253.0 |
E-value |
5.0e-66 |
Report |
|