DK959084
Clone id TST39A01NGRL0003_L16
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_L16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGTTGCCGGCTGCAT
CACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACGCAGCGGCAGCTCCT
CCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCAGCGCGTGAATCAGCACGGTGGGCTA
TTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTTCCTCCTCCT
CCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAGCTCGAAGTGCTTGC
CAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTCCCTACATCC
TCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTTCATGTCACT
GCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTTACGGACAGA
ACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAAGCGTACCTGCTGCT
GCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGGAT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959084|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_L16, 5'
(588 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id Q4PCH1
Definition tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis
Align length 41
Score (bit) 35.0
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959084|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_L16, 5'
(588 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis GN=U... 35 3.1
tr|A8L4Z4|A8L4Z4_FRASN Restriction endonuclease OS=Frankia sp. (... 34 7.0
tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Claviba... 33 9.1
tr|A4H6Q5|A4H6Q5_LEIBR Putative uncharacterized protein OS=Leish... 33 9.1

>tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis
GN=UM02192.1 PE=4 SV=1
Length = 210

Score = 35.0 bits (79), Expect = 3.1
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3

Query: 81 RGLAWWRTRSGSSSTAALDSEKAQSARESARWAIRLDHPTI 203
+ + WW+ G++ + + + R++A WA+R+D P++
Sbjct: 155 KAMRWWKDVDGAARDRGITKPEIEEIRDTADWAVRMDEPSM 195


>tr|A8L4Z4|A8L4Z4_FRASN Restriction endonuclease OS=Frankia sp.
(strain EAN1pec) GN=Franean1_7063 PE=4 SV=1
Length = 664

Score = 33.9 bits (76), Expect = 7.0
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3

Query: 81 RGLAWWRTRSGSSSTAALDSEKAQSARESARWAIRLD 191
R LA RTR G AALD A +AR +A+WA LD
Sbjct: 157 RQLAAARTRHGQQVAAALDRAAAHNARIAAQWAACLD 193


>tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein
OS=Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382) GN=CMM_2744 PE=4 SV=1
Length = 237

Score = 33.5 bits (75), Expect = 9.1
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = -2

Query: 533 GTLDGAPCLATGLMLSTVLSVKTVPSTFIALRLSDADAVT*SGRWFARQELPKLTLVEDV 354
G + P + GL L V +SDA ++ R ARQ L + L +V
Sbjct: 113 GAVFAFPLVVAGLSLGAVDLYSRTARDISTQEVSDATTLS---RIVARQVLRRALLAAEV 169

Query: 353 GKGTQGSWVREFKREELWQALRAAIAKM 270
+ G W + R E+ QA +A+M
Sbjct: 170 RQEETGGWEGRYSRREVHQATGMVVAQM 197


>tr|A4H6Q5|A4H6Q5_LEIBR Putative uncharacterized protein
OS=Leishmania braziliensis GN=LbrM11_V2.1090 PE=4 SV=1
Length = 626

Score = 33.5 bits (75), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2

Query: 533 GTLDGAPCLATGLMLSTVLSVKTVPSTFIALRLSDA 426
GT DGA C+A L++ V+++ VPS ++ +L+ A
Sbjct: 589 GTCDGAICIAVPLIVCMVVNILAVPSAYVFYKLTKA 624