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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959096
Clone id TST39A01NGRL0003_M05
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_M05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCACGGGATCGTCGGCCCGCTTGCAGGCGATCCTGTGTTCTCTTGGTTGTAGCAAAGG
GATCTGTAAGGCCTGCCGCTGCTTTAGGGTTTTCCCGATCCCTGCTTCTTTATTCCTGCC
ATATGTGACAACAGGGGGCTAATCAGCGCTGTCCATTTATCAGTTGGTCGGTGATCTGAC
ACTGCTTTTAGTTGAATCGGCAACAGTGTGATGTCTCACGCCCTTGGCGACACCACTCCC
AATGTGGTGACCCTGGTTCGTCATCTTGGGCCCAAAGTGCACAAGTCTTGTACTGAATGG
GTACAGCATAGCCTTTCCTTGCAACGCTATAAAGGCTGGGCCATGTCTACGGTGATCTAT
GGAATTGGATCTGTCGAAGCAACCATATCAAGCCAGATTTCAATACATGATGCAGTTGCA
CCGCCGTCTGTGAGAACTGGAAGCTACAGGGTGGCCCCAAGAATGTTGGCATACAAGGCA
AGGCGCACCAAGAGGCGATCTCACAGAGGTGGGGGAGATGGGGATGATGAAGGGCCTGAG
TGGGATGAACGAGGGTTTGGTGGCAGCGGGGGCTGGGGCGGAGACGACAACGGTCGGGGC
GGGAATGATTACTGGGGTGCAAGCTG
■■Homology search results ■■ -
sp_hit_id A4WEK3
Definition sp|A4WEK3|MUG_ENT38 G/U mismatch-specific DNA glycosylase OS=Enterobacter sp. (strain 638)
Align length 36
Score (bit) 30.8
E-value 5.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959096|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_M05, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4WEK3|MUG_ENT38 G/U mismatch-specific DNA glycosylase OS=Ent...    31   5.9  
sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violace...    31   5.9  
sp|Q8XVI2|MURE_RALSO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--...    30   7.7  

>sp|A4WEK3|MUG_ENT38 G/U mismatch-specific DNA glycosylase
           OS=Enterobacter sp. (strain 638) GN=mug PE=3 SV=1
          Length = 168

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 456 PKNVGIQGK-AHQEAISQRWGRWG**RA*VG*TRVW 560
           P  + I GK A+++A SQR  +WG  R  +G T+VW
Sbjct: 101 PAALAILGKQAYEQAFSQRGAQWGKQRITIGMTQVW 136


>sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
           GN=cmk PE=3 SV=1
          Length = 222

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 433 SQTAVQL-HHVLKSGLIWLLRQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALWAQDDE 257
           +Q A +L  H L SG ++ L  +   R    W    ++AR   A+P+++   A+W + ++
Sbjct: 21  AQVAARLAFHYLDSGSLYRLLALHARRRGIAWDDEPALARAAAALPVEFSDGAVWLEGND 80


>sp|Q8XVI2|MURE_RALSO
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase OS=Ralstonia solanacearum
           GN=murE PE=3 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +1

Query: 238 PNVVTLVRHLGPKVHKSCTEWVQHSLSLQRYKGWAMSTVIYGIGSVEATISSQISIHDAV 417
           P+ + ++   G     SC++W+  +LS Q  +   + T+  G G V+A +++  +  DA+
Sbjct: 115 PDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGTL--GTGFVDALVATGFTTPDAI 172

Query: 418 APPSVRTGSYRVAPRMLA 471
                    +R   R +A
Sbjct: 173 QLQHSLADLHRAGARAVA 190
tr_hit_id B4R3L9
Definition tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans
Align length 42
Score (bit) 37.4
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959096|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_M05, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942...    37   0.74 
tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family OS...    37   1.3  
tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus G...    37   1.3  
tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae GN...    37   1.3  
tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.6  
tr|Q0SVP6|Q0SVP6_CLOPS ABC transporter, substrate-binding protei...    35   2.8  
tr|B1BGW4|B1BGW4_CLOPE ABC transporter, substrate-binding protei...    35   2.8  
tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (s...    35   4.8  
tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic OS=Pros...    35   4.8  
tr|A7PNR8|A7PNR8_VITVI Chromosome chr8 scaffold_23, whole genome...    34   6.2  
tr|A5B2R0|A5B2R0_VITVI Putative uncharacterized protein OS=Vitis...    34   6.2  
tr|Q29MY3|Q29MY3_DROPS GA16478 OS=Drosophila pseudoobscura pseud...    34   8.1  
tr|B4G8J5|B4G8J5_DROPE GL19307 OS=Drosophila persimilis GN=GL193...    34   8.1  

>tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942
           PE=4 SV=1
          Length = 426

 Score = 37.4 bits (85), Expect = 0.74
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -3

Query: 555 PSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSSH 430
           P  +P+RP ++P++P ++R  L  PC  C HS   P AS SH
Sbjct: 39  PMRVPVRPQLLPVNPLAMRRHLPRPC--CPHSTSQP-ASDSH 77


>tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family
           OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
           44196) GN=MAB_0937c PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 366 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIGSGVAKGVR-HHTVADST 190
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 189 KSSVRSPT 166
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus
           GN=mmpL PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 366 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIGSGVAKGVR-HHTVADST 190
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 189 KSSVRSPT 166
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae
           GN=mmpL PE=4 SV=1
          Length = 1006

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 366 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIGSGVAKGVR-HHTVADST 190
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 189 KSSVRSPT 166
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84628 PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 373 VEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTK 492
           V A +SS   + DA A P VR   Y++AP  L  KAR+++
Sbjct: 106 VVAAVSSGAPVQDATAAPPVRRNCYQLAPSTLTLKARKSR 145


>tr|Q0SVP6|Q0SVP6_CLOPS ABC transporter, substrate-binding protein
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=CPR_0476 PE=4 SV=1
          Length = 427

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -2

Query: 376 RQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALW---AQDDEPGSPH----WEW 233
           ++I  +  P     LYS   K YA+P  Y T ALW   A  DE G P+    W W
Sbjct: 125 KKINLNNYPEGLVELYSPDNKNYAIPKDYDTTALWYNKALFDEAGIPYPDETWTW 179


>tr|B1BGW4|B1BGW4_CLOPE ABC transporter, substrate-binding protein
           OS=Clostridium perfringens C str. JGS1495 GN=CPC_0520
           PE=4 SV=1
          Length = 427

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -2

Query: 376 RQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALW---AQDDEPGSPH----WEW 233
           ++I  +  P     LYS   K YA+P  Y T ALW   A  DE G P+    W W
Sbjct: 125 KKINLNNYPEGLVELYSPDNKNYAIPKDYDTTALWYNKALFDEAGIPYPDETWTW 179


>tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (strain
            So ce56) GN=sce6844 PE=4 SV=1
          Length = 1716

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 535  ALHHPHLPHLCEIASWCALPCMPTFLGP-PCSFQFSQTAVQLHHVLKSGLIWLLRQIQFH 359
            +L H H      + S C    M + LG  PC+FQFS+ A++L+   KS    L  ++ FH
Sbjct: 921  SLQHGHAEESSFVYS-CYAAVMVSILGDVPCAFQFSEMALRLNEKFKSVTAMLKGRLLFH 979

Query: 358  RSP*TWPSLYSVARKGYAVPI 296
             +      + S+  + YA  I
Sbjct: 980  HA-----GVISIWHRHYATSI 995


>tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic
           OS=Prosthecochloris vibrioformis (strain DSM 265)
           GN=Cvib_0782 PE=3 SV=1
          Length = 503

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 307 HSLSLQRYKGW---AMSTVIYGIGSVEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYK 477
           H L L ++      A+ T +Y   S+    SS ++  ++V P S+R     VAPR+L+YK
Sbjct: 341 HELRLPKHHATSFAAVETRLYDALSIPVPDSSAVA--ESVTPDSIRVSFVAVAPRLLSYK 398

Query: 478 ARR 486
            +R
Sbjct: 399 VKR 401


>tr|A7PNR8|A7PNR8_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021366001
           PE=4 SV=1
          Length = 504

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 610 NHSRPDRCRLRPSPRCHQTLVHPTQALHHPHLPHLC 503
           N  R DR RL+ SP  H  ++H     HH H  H C
Sbjct: 75  NVHRRDRARLKQSPSPHNEILHHHHQNHHNHTQHPC 110